Cfil005292.1
Basic Information
- Insect
- Calameuta filiformis
- Gene Symbol
- SCAND3
- Assembly
- GCA_030142265.1
- Location
- JARQSU010000352.1:1675537-1678398[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00099 0.074 13.6 3.1 1 23 360 382 360 382 0.97 2 15 0.00012 0.0089 16.5 1.1 3 23 390 411 388 411 0.94 3 15 1.4e-05 0.0011 19.4 1.2 2 23 508 529 507 529 0.97 4 15 1.2e-05 0.00092 19.6 2.3 1 23 535 557 535 557 0.98 5 15 7.8e-05 0.0059 17.1 0.3 1 23 563 585 563 585 0.98 6 15 1.2e-06 8.7e-05 22.9 1.4 1 23 601 623 601 623 0.98 7 15 8.3e-06 0.00062 20.2 1.2 3 23 631 651 629 651 0.98 8 15 7.5e-06 0.00057 20.3 1.9 1 23 657 679 657 679 0.98 9 15 0.0038 0.29 11.8 0.3 1 23 685 707 685 707 0.99 10 15 7.2e-06 0.00054 20.4 0.3 1 23 713 736 713 736 0.94 11 15 2.1e-05 0.0016 18.9 1.3 1 23 742 764 742 764 0.98 12 15 0.00046 0.035 14.7 4.7 1 23 770 792 770 792 0.98 13 15 7e-06 0.00052 20.4 0.2 1 23 798 821 798 821 0.96 14 15 1.9e-05 0.0014 19.1 0.8 1 23 827 849 827 849 0.95 15 15 4.1e-06 0.00031 21.1 4.5 1 23 855 877 855 877 0.99
Sequence Information
- Coding Sequence
- ATGGCAACTGACTGGATGACAGAAAAGATTTCAATGAAGAGTGTGCTAAATCAAGTTTTGAATGCAAGAACTGAATCAGATTTTATATCTGTCAAACAAGAAATGGAACTATTTGATGAAACTTTATGTCCTAAAACACAAGAGATAGGAATTAATCGCGATCAATGTATTGATAAGCAAAAGAGTAATGAAACTGATGCAGTGCCATCTTCTTCAAAAGCACAACCAGCTaGTACTTTGCCGTCACATAATGGAGAATGCAACACAGATATTTTGCCTGCAATTCCTAACGAAAGAACTTTTGTATTAGCAAGTGTCATAAATCAAGGCTCATTGTGTAGAGGTCAAATTGATGTAATGGAAATACAAGCTGAGGAAGAAcacaattacaaatatttgttcatTTATGAAGATCagttttctaaatttattgttctcaAAGCTTTACGAACTAATACTATCAAAGAAGTCACATTGAAACTCTTTGATGTACTGACAATCATTGGAGCACCGCGAGTTTTACAAAGTGGTAATGGTCGCGAATTTACTGAACGTGTGGTGCGCGAATTACGTTCACTTTGGACAAACCTTGCAATAGTGCATGGAAATGTGTCAAAATGTGATGAAAGCAGTAAGAGAGATTATCAAAGTCTTATAAAATCATGGCTCATAACAAATCCATCAAAAGTCTGGTATCAAGGTCTTAAATTTATACAGATCCTTGAAAATACAACGTTTCCATCCAAGGATGGTAAAATTCCATATGATTTACTATTTGGCCATAATGTTCACAAGGTATGTGAGAACGGGAGTCTTTCTAAAGAAGTTATGAACAAAATTTGGAGTGAAGAGCAATTGTACGAGCATCTCAAGGAGAATGGAAGCATCTCTCTTGATATTGAATTTGGAGACAGCCCAGTTAAATCACCAAGAAATAACAGAAGTACAAATGGTTTTAATTTTGTGAatgtaaaaagtgaaatgtCACTGAGCACAAATCAAATAGAAGATTCGCAATCCGACGAAGAAACTAGCACAGGTGATAGGTTACAGACACAAGACACAGATAAGTATCTGTTCAGGTGCAAAATTTGCCAGAAACAATATATGAAGTTAGGTCATTTAAAGAATCATGTAAAAGCACACGTGAAAGCAGGTCGACTTGATTGTACTATTTGCCACAAGACATTCCGTCTTCCAAGTCTATATGATAAGCATATGAATGAAGTTCACAGTCAAGAAAAAATCTTCAGCGATGAtgcttttcattttgtaaagAGAATGGATACGGATGACATTTCACCAGAAAAATccgaaaataaaaacgaaaagttaGAAACTAGATCGGAAGAGAATCCTTTGGAAATAACCGAACGCATAAGTcctgagaaaaaagataacatGCTCCTCTGCATCTCCAACAAAAGTCACAAAAAAAGCCTTAAACGCACAAACGCCCTAGCCAGAAGAAAAGTTTCCAAAGAGAATCGTCTAACTAAAGTGAATGGGGACCCATTGCTTGAGTGCACATATTGTCAACAAAAGTTTGACTTTCCAAGTGTCTTAAAACGACACATGCGGTCTCATACAAATGAAAGACCTTACGTTTGTCAAGTCTGCAACAAGAGTTTCAAGCAGTTAGGACATCTGAGTCAGCATTCTTTGACACATACGGACTACAGGTCTTTCCAATGTGCAATTTGCGGAGTAAAATTTGAGTCTCTGGACAGCTTGAAGAATCATTCGCAAAGTCATAAAGGAGAATCAGTTGTATACCGACCAAAGGAGATTTATCGCCTCTTCGAATGCGACAACTGCAAAAAGGTGTTTACAACAAAAAGTGTTCTAGAACGTCACATATTTACTCATACGCATGAGCGCCAATTTGGCTGTAAAGTATGTGGAAAAAGATTCAAACAAGCAGGTCACGTTAAGTCCCATATGCTGATTCATACAGGAGAACGTAAATTCGAGTGTACTATATGTTCAAAACGTTTTAGCCTATCAAATTCTCTCAaaaaacatatgtatgtacacaacGGCGAAAAACCTTATCAGTGTGACGTATGTGGTGCCAGGTTTCTTGAAAAACGATATCTCAATGGACACTTAATGACCCACACAAATGAGCGTCCATTCTCTTGCAAAATATGTGGTAAAAGGTATACCCTTGCAGATACCCTAAGACGTCATATAAGTGCAGCTCATGAGGATGGCAGAACCTACCAGTGCGAAATCTGTGCAAAAATGTTTAAACAGCTTGCGCATTTATCAGTTCACAAGAAAGTGCACAACGATGAGCGACCATTTCAGTGTCACCTTTGtgagaagaatttcaaacacAAGAATGTCCTCAAGTCGCACCTGGCGATACACGCTAATGTAAGACCGTTCGAGTGTGACGTTTGTAAAGCCACCTTTGTGAGAAAAACTAATTTACAAACTCACATAGCATCGGCTCATATGAATGAACGTCCTTATGCATGTAAGATATGCGATAAGCGCTTCAAGCAAATCAGCCATCTGAATGGTCATGTTGTGGTACATAGTAATTCTATGCCATATCAGTGTGACTTTTGTGACCGCCGGTGTAACAGACTAGATAATCTGAAAAAGCATATGCGTCTGCATACTAAAAATAAGGAGTAA
- Protein Sequence
- MATDWMTEKISMKSVLNQVLNARTESDFISVKQEMELFDETLCPKTQEIGINRDQCIDKQKSNETDAVPSSSKAQPASTLPSHNGECNTDILPAIPNERTFVLASVINQGSLCRGQIDVMEIQAEEEHNYKYLFIYEDQFSKFIVLKALRTNTIKEVTLKLFDVLTIIGAPRVLQSGNGREFTERVVRELRSLWTNLAIVHGNVSKCDESSKRDYQSLIKSWLITNPSKVWYQGLKFIQILENTTFPSKDGKIPYDLLFGHNVHKVCENGSLSKEVMNKIWSEEQLYEHLKENGSISLDIEFGDSPVKSPRNNRSTNGFNFVNVKSEMSLSTNQIEDSQSDEETSTGDRLQTQDTDKYLFRCKICQKQYMKLGHLKNHVKAHVKAGRLDCTICHKTFRLPSLYDKHMNEVHSQEKIFSDDAFHFVKRMDTDDISPEKSENKNEKLETRSEENPLEITERISPEKKDNMLLCISNKSHKKSLKRTNALARRKVSKENRLTKVNGDPLLECTYCQQKFDFPSVLKRHMRSHTNERPYVCQVCNKSFKQLGHLSQHSLTHTDYRSFQCAICGVKFESLDSLKNHSQSHKGESVVYRPKEIYRLFECDNCKKVFTTKSVLERHIFTHTHERQFGCKVCGKRFKQAGHVKSHMLIHTGERKFECTICSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRYLNGHLMTHTNERPFSCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYACKICDKRFKQISHLNGHVVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00298497;
- 90% Identity
- iTF_00298497;
- 80% Identity
- -