Basic Information

Insect: Calameuta filiformis
Gene Symbol: -
Assembly: GCA_030142265.1
Location: JARQSU010000352.1:22798-24797[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 9.9 7.4e+02 1.1 1.0 3 23 157 177 152 177 0.83

2 16 1.6e-05 0.0012 19.3 0.7 2 23 182 203 181 203 0.97

3 16 0.00017 0.013 16.0 0.8 2 23 210 231 209 231 0.97

4 16 9.1e-06 0.00068 20.1 0.6 1 23 237 259 237 259 0.98

5 16 5.5e-07 4.1e-05 23.9 0.7 1 23 265 287 265 287 0.98

6 16 0.088 6.6 7.5 0.4 1 20 293 312 293 315 0.93

7 16 1.2e-05 0.0009 19.7 0.7 1 20 321 340 321 343 0.95

8 16 1.3e-06 0.0001 22.7 2.4 1 23 349 371 349 371 0.97

9 16 3.7e-05 0.0028 18.1 0.6 1 23 377 399 377 399 0.98

10 16 9.5e-06 0.00071 20.0 5.0 1 23 405 427 405 427 0.97

11 16 8.5e-08 6.4e-06 26.4 0.4 1 23 432 454 432 454 0.97

12 16 0.00018 0.014 16.0 0.4 1 23 460 482 460 482 0.97

13 16 1.5e-06 0.00011 22.5 6.2 1 23 488 510 488 510 0.98

14 16 3.8e-06 0.00029 21.2 1.5 1 23 516 538 516 538 0.98

15 16 3.3e-06 0.00025 21.4 0.5 1 23 544 566 544 566 0.97

16 16 0.00045 0.034 14.7 1.2 1 23 572 595 572 595 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	9.9	7.4e+02	1.1	1.0	3	23	157	177	152	177	0.83
2	16	1.6e-05	0.0012	19.3	0.7	2	23	182	203	181	203	0.97
3	16	0.00017	0.013	16.0	0.8	2	23	210	231	209	231	0.97
4	16	9.1e-06	0.00068	20.1	0.6	1	23	237	259	237	259	0.98
5	16	5.5e-07	4.1e-05	23.9	0.7	1	23	265	287	265	287	0.98
6	16	0.088	6.6	7.5	0.4	1	20	293	312	293	315	0.93
7	16	1.2e-05	0.0009	19.7	0.7	1	20	321	340	321	343	0.95
8	16	1.3e-06	0.0001	22.7	2.4	1	23	349	371	349	371	0.97
9	16	3.7e-05	0.0028	18.1	0.6	1	23	377	399	377	399	0.98
10	16	9.5e-06	0.00071	20.0	5.0	1	23	405	427	405	427	0.97
11	16	8.5e-08	6.4e-06	26.4	0.4	1	23	432	454	432	454	0.97
12	16	0.00018	0.014	16.0	0.4	1	23	460	482	460	482	0.97
13	16	1.5e-06	0.00011	22.5	6.2	1	23	488	510	488	510	0.98
14	16	3.8e-06	0.00029	21.2	1.5	1	23	516	538	516	538	0.98
15	16	3.3e-06	0.00025	21.4	0.5	1	23	544	566	544	566	0.97
16	16	0.00045	0.034	14.7	1.2	1	23	572	595	572	595	0.94

Sequence Information

Coding Sequence: ATGGAAGATTTTACAGTGAAAGACGAACCGATGGATGCTTTAAGTTTAGAGGCACAGGTGATGGCTGAGAACATTGTAAGCGTTGTACTTAAAGAAGAACCTGGAGCTAGATTCGATCCAAATTATATGGATGATATCTGTTCAGGAAACTTTGAAAAGGTATTTCTACCTATCGAGAATCAGGAAGTTGATTTATCTGAAGAAATGAATTTATGTCAGCAGGTTCAACTAGGGATAAAGAACGAGGACAATGTTCATCACCATTGGCCACAGCAGGTCATTGAAACCAGTTTATGTGACAAAGAAGACAACTCACTGCATCGATACCTGGTTGATTCCGAATTCCAGCAAACCTATCTTGATTCAACTACGTCAAGAGATACAGTGAATTCAATGAACGAAGATGATCCTGGGCGATACAACTTATTTGGCATAAATCCTCAGCAATCTAAATTCTGCAAGATACAGTGCATCGTATGTAAAAAATGGTTTTTAAACAATGAATCTCTGGTCACTCATTTAGGTACACACTGTGAGGGAACTCAGTGTGAAGtgtgtaatgaaaattttgaagacaAATCCAGTTTGCATGCTCATATGCTACTTCACGTGGGCATGAATCCATTAGAGTGTAACGTATGTCAGAAAAGATTCGCCAACAAATTACGCTTACGTGGTCACATGCAATCCCATGCAACAAATAATCCATATGAGTGTGATACCTGCCAAAAAACATTCATAAAACGATCAGGTTTAAGCAATCACCTGTTGATTCACGCTGGCGAAAGATTATTCAAGTGCGAAATTTGTGAAACaacttttaaagaaaaaggaagtttGAATAGACATATGCTAATTCATACAGGAGAACGTTCATACAAATGCGACGTGTGCTGTGCAGCTTTTCGCGAGAAAGCTAAACTAAACGTTCACATACCAGTTCACAGTGGTGTAAAGCAACATCAATGTACCGTTTGTAATAGATCATTCGCACAAAAAACAGCGCTAAATAATCACATGCCGGCACATAGTGGTCAAAAACCGCACGAGTGCAATATTTGCCAAAAAACATACAAACGAAAATCTGAATTAGTGAGACATACCCTGGTGCATACTGGCGAGAGGCCATACGAGTGTAAAGAATGCCTAATGACATTCAGGGAAAAGGCAAAGTTAAACTCCCATATGTTGGTTCATACGGGCGAGAAACCACACGAGTGTCACATATGTCAAAAAGCTTGCGCACGTAAATCAGATCTCAACAGTCATATGCTCTCTCACACCGGTGGCCAGTATGATTGCAATGTATGCGAGAAAATCTTCACAAGGAAATCTGATTTAAATAGACACATCTTAATACATACCGGTGAGAAACCATTTGCATGCCATTTATGCGAAATGGCATTCAGAGAAAAGGCTAGACTGAATGCTCACATGCTTATTCACACTGGTGATAAAAGACACACCTGTCACATCTGTCAAAAAACATTCAGGGAAAAATCTACCCTGAAGAAACACATGCTCATCCATACTGGAGATAGACCGTACAAGTGTTTTGTCTGTCGTAAGGCCTTTACTCAAAAAACTACACTCAATAGCCACATATTGATTCATACCGGTGAGAGACCTTATGAATGTAATgtctgtcaaaaaatgtttagagAACGATCTGCATTGAGAAAACATGAACTGATCCACACAGGTGAAAAGCCATATGAATGCATCGTTTGCCTAAAGAAATTCACCTACAAATCTGCACTAAAAAGTCATATGACGAGCAATCATTCATCGTAG
Protein Sequence: MEDFTVKDEPMDALSLEAQVMAENIVSVVLKEEPGARFDPNYMDDICSGNFEKVFLPIENQEVDLSEEMNLCQQVQLGIKNEDNVHHHWPQQVIETSLCDKEDNSLHRYLVDSEFQQTYLDSTTSRDTVNSMNEDDPGRYNLFGINPQQSKFCKIQCIVCKKWFLNNESLVTHLGTHCEGTQCEVCNENFEDKSSLHAHMLLHVGMNPLECNVCQKRFANKLRLRGHMQSHATNNPYECDTCQKTFIKRSGLSNHLLIHAGERLFKCEICETTFKEKGSLNRHMLIHTGERSYKCDVCCAAFREKAKLNVHIPVHSGVKQHQCTVCNRSFAQKTALNNHMPAHSGQKPHECNICQKTYKRKSELVRHTLVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICQKACARKSDLNSHMLSHTGGQYDCNVCEKIFTRKSDLNRHILIHTGEKPFACHLCEMAFREKARLNAHMLIHTGDKRHTCHICQKTFREKSTLKKHMLIHTGDRPYKCFVCRKAFTQKTTLNSHILIHTGERPYECNVCQKMFRERSALRKHELIHTGEKPYECIVCLKKFTYKSALKSHMTSNHSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00294657;
90% Identity: iTF_00294657;
80% Identity: -