Basic Information

Gene Symbol
stc
Assembly
GCA_035041755.1
Location
JAWNKX010000218.1:1794452-1798408[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 3 2.1e+04 -4.3 1.6 15 19 551 555 550 555 0.81
2 15 0.083 5.8e+02 0.9 2.2 4 11 584 591 583 592 0.91
3 15 3.9e-05 0.27 11.5 14.5 4 19 598 613 596 613 0.93
4 15 1.5 1e+04 -3.1 0.6 6 10 639 643 638 643 0.91
5 15 4.2e-07 0.0029 17.8 15.9 1 18 649 666 649 667 0.92
6 15 0.87 6.1e+03 -2.4 1.1 8 13 672 677 671 678 0.80
7 15 6.1e-07 0.0043 17.3 17.5 1 19 707 725 707 725 0.98
8 15 2 1.4e+04 -3.5 0.5 5 10 755 760 755 760 0.90
9 15 0.00083 5.8 7.3 14.1 4 18 773 787 766 788 0.86
10 15 0.052 3.6e+02 1.5 11.5 1 11 828 838 828 849 0.94
11 15 8.3e-10 5.8e-06 26.4 15.5 1 18 855 872 855 873 0.97
12 15 3 2.1e+04 -4.7 14.1 9 18 919 929 910 930 0.85
13 15 1.4e-07 0.001 19.3 13.9 1 17 966 982 966 992 0.89
14 15 7.1e-07 0.005 17.1 14.5 1 19 998 1017 998 1017 0.96
15 15 3 2.1e+04 -5.8 3.9 8 12 1033 1037 1026 1037 0.64

Sequence Information

Coding Sequence
ATGTCTCATTTATGGCCGAATTTCAGCGGCGACTCTGCTGCTTCGTCGTCAACGGCTGCGGCTCTCAACAAAGTGGTTGGCAGCGGTGTTGGCGTTGGTAACACCAACACCCAAATGGAGGCGCAACAATTAAGTGTTGGGCATGGCTACTTTGGTAACAACGGCAACGCCGGCGTTACGATTACTGACTCACACACCAATAACTACAACACGAATCTTGGTGTTGTTGACGTTCGTGCTACTGAAAATGGCGGCGGTGACGCTATCAGCAGTGgaatcaccaacaacaactacgttAACTTTAATCAGTTCATATTACAACATAATTTACTGGGTAATGCCTCGCCGAATTTGATGCAAAACGCCCCTTCGTCATACGATTATGGTAACCTCGATAACGACGGTTTTATAAACTACGGCTTAAAAGCAAATACGCCGACTTCGTCTGTCTGcgccactacaacaacaacaacaacaacaacaacaaattttgcatttgacaCGCTATTCCCCACGCAAAATATCTTTCAATGCGGTTACAATATCGGGACAGgggcaacaacaattgcaagaAACGGCAcaggaaacaacaacaacgctaaTAGTGTCGTTTGCGACGATGACAAACCAACGACAAGCCAAAGTAGGTACAACAACTATTTTACACCCTATGAGAATATTGGTGGTGTCAGATACTTTGGCAATCCATTTGCTACGGGTTTTGATATATGTGCTCGTACAACTTTGCAACCGGATGCCCCGGAATTTGTGCCCAGTTTTGCGAAGCTGAATTTGAACGCCTCGGCTACGGCGCCTGAGAGTGTCAGTCccacaacaactacagcacCGACAACAGCCTCAACAAATGGTCATGAGCCAGCGGTAGTAGGTCCCTCGACGGTAGTAGTTGGTAATCCCTTTAGCGATAGTAGAAATGCCATGAATGGCAGCAACACTGCCAATAGAATACAATACAAACGACCCTCAGGCGAGGAGCAACAGCCACAACAgactacaacaacgacaaataaacacaacatgaataacaacaatggcacagGAACAGGCGCCACTAGCAAGCAAAGCTATCATGTCTTATATAATTACTCCACCATGGAACGTGAACGCGAGCGTGATCGAGAGAGGGATCGGGAACGTGGGCCCAAAACGAATAGTAGACATCCACGCAATGGCGGTGGTGATGGTTCTGGCGGCGGTGCCAGTGGCAGCAATCGCCGTCATCTGGATTATCGTGAGGAGCGTGAAGATCGTTACGCCGAACGCTATGAGAAGCGTCCACAGAAACAACAGCGCTATGAGAATCATCGCAGCAATAAGCGTCGTGACGATTGGAATCGTAATCGCGATCGTATTAATGGCTTCCGTGTTGATGACCTGGACAATAGCAATGAGAGTCCGCTGCATTCGCCGGATAAGAAGAGCTCTCCTAATAAGCTCGTCGTGGATAATGTATCGCAGCGTGAAAAACTCGTACGTGACATTGATATGCGTCGCTTGGAGTGTCTCGTTTGTGTGGAGCCCATAAAGTCGCATCATGGAGTTTGGTCTTGTCACAATTGCTACCACATTATGCATCTCAAATGCATTATAACCTGGGCTCAATCTTCAAAATCAGAGGAGGGTTGGCGTTGTCCTGCTTGTCAGTATGTGACTAAGGATGTTCCGCGTGATTATTATTGCTTCTGTGGGAAGATGCGTAATCCACAGTGTAATCGTCAAGAGTTGGCGCATTCGTGTGGCGAAGTTTGCTGTCGCATTGAGGGTTGTCCCCATGCTTGCACACTGCTCTGTCATCCGGGTCCGTGTCCCGCGTGTCAAGCTCAAGTGCAGCGCACCTGCGGGTGTGGAAAGTCAACTATAACCATGCTTTGCGCCATGAAGGATGCCATCGCATGTGAGGCTGTGTGCGAGAAGCTGTTGAACTGTGAGCAACATCGTTGCAAGGAGAAATGCCACGAAGGCAAGTGTCCGCCGTGCGAGGAGAAGGTCGACCAGACTTGCCATTGCGGCAAACAACAACGTCAGGTGGTTTGCTCGCGTGAGACGCACGACAAGCACGTCTACTCATGCGGAAAGCCTTGCGGTCGCCCATTGTCTTGTGGCAATCACAAGTGCAAGGATTGTTGCCATGCGGGCGAATGTCGGACGTGCAAGATGAGCCCTTCGGTGGTAACTTCATGCCCTTGCGGCAAAATGCCCGTGCCAGCGGAGCAACGCAAGTCGTGTCTGGATCCAATACCCACATGTGAGGGTGTTTGCAGCAAAACGCTACGCTGCGGCAAGCCAATGCATCCACATAAGTGCACCAGTAAATGTCATCTGGCCAATTGTCCGCCGTGCAACAAACAGACCGCCGTGAAGTGCCGCTGCGGCCACATGGATCAGATGATCAAATGCCGTCAGTTATCGACGCGTGCTGACGATGCACGCTGCAAGAAACGCTGCACAAAGAAACGCTCGTGCGGCAAGCACAAGTGCAACCAAGAGTGTTGCATCGACATCGACCACATTTGTCCGCTGCCGTGCAACTACACATTGTCCTGTGGTAAGCACAAATGCGATCAGCCCTGCCATCGGGGCAATTGTCCGCCCTGTTATCGTTCCTCGTTCGATGAGCTCTTTTGTGAATGTGGCGCTGAAGTAATCATGCCACCGGTGCCATGCGGCACCAGGCGCCCCATCTGCCGCCAGCTATGTACGCGGCCACATCCGTGCATACATCCACCGCAACACAACTGCCACTCGGGTCCGACTTGTCCACCGTGTATGTTCTTCACCACACAAAGCTGCTTCGGTGAGCATGAGTCACGCAAAACCATTCCATGCTCACAGAATAGCTACAGCTGTGGTTTTCCTTGCAACAAGCCACTGCCATGCGGACGACACAAGTGTATCAAGGCGTGCCACGAGGGTCCCTGTCAGACGGCAGGGGAGATTTGCAAGCAAAGCTGCCCGACACCCCGTACCCAATGTGGACACAAGTGTTTGGCGCCATGTCATGAGGGCGATTGCCCAGAAAGTCCGTGCAAGGAAATGGTCGAAGTTCAGTGTGAGTGCGGTCATCGCAAACAGCATCGCACTTGTCATGAATTGGTGCGCGAATACAGTCGCATTGCCACTGCCCAGTTAGCCTCATCGATGGCCGAGATTCAGCGCGGCAATTACATGGAACTAAGTGAGATTTTGGCACCCGTCAAACTCAATAAGACCAATAAAACTTTGGACTGCAACGATGAATGCCGCCTAGTTGAACGTAATCGCCGTCTGGCTATTGGGCTCCAGGTACGCAATCTCGATGCCCAGCAGCGCCAGACAACCAAATATTCCGAATTTGTGCGCACGTTCGCCAAACGTAATCCAGCGCTGGCCAAGTCCGTCTATGACACGCTAACAAATCTTGTCAAGCTGGCCAAGGAGAGTAAGCAGAAGTCCCGAAGTCATTCGTTTCCTACAATGAATCGTGAGAAGCGCCAGTTGGTGCATGAGCTTTGTGAGATGTTCAACGTGGAATCGGTGTCCTATGATGCTGAGCCCAACCGCAATGTCGTCGCTACAGCGTACAAGGAAAAGGCATGGCTACCCGCTACAAGCATCATGGAGGTTGTACAACGTGAGTCTGGACAGCGTCGGGTGCCTGTGCCCAATAACAATGCTTGGGGTCTGAAGAAGTAG
Protein Sequence
MSHLWPNFSGDSAASSSTAAALNKVVGSGVGVGNTNTQMEAQQLSVGHGYFGNNGNAGVTITDSHTNNYNTNLGVVDVRATENGGGDAISSGITNNNYVNFNQFILQHNLLGNASPNLMQNAPSSYDYGNLDNDGFINYGLKANTPTSSVCATTTTTTTTTTNFAFDTLFPTQNIFQCGYNIGTGATTIARNGTGNNNNANSVVCDDDKPTTSQSRYNNYFTPYENIGGVRYFGNPFATGFDICARTTLQPDAPEFVPSFAKLNLNASATAPESVSPTTTTAPTTASTNGHEPAVVGPSTVVVGNPFSDSRNAMNGSNTANRIQYKRPSGEEQQPQQTTTTTNKHNMNNNNGTGTGATSKQSYHVLYNYSTMERERERDRERDRERGPKTNSRHPRNGGGDGSGGGASGSNRRHLDYREEREDRYAERYEKRPQKQQRYENHRSNKRRDDWNRNRDRINGFRVDDLDNSNESPLHSPDKKSSPNKLVVDNVSQREKLVRDIDMRRLECLVCVEPIKSHHGVWSCHNCYHIMHLKCIITWAQSSKSEEGWRCPACQYVTKDVPRDYYCFCGKMRNPQCNRQELAHSCGEVCCRIEGCPHACTLLCHPGPCPACQAQVQRTCGCGKSTITMLCAMKDAIACEAVCEKLLNCEQHRCKEKCHEGKCPPCEEKVDQTCHCGKQQRQVVCSRETHDKHVYSCGKPCGRPLSCGNHKCKDCCHAGECRTCKMSPSVVTSCPCGKMPVPAEQRKSCLDPIPTCEGVCSKTLRCGKPMHPHKCTSKCHLANCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCTKKRSCGKHKCNQECCIDIDHICPLPCNYTLSCGKHKCDQPCHRGNCPPCYRSSFDELFCECGAEVIMPPVPCGTRRPICRQLCTRPHPCIHPPQHNCHSGPTCPPCMFFTTQSCFGEHESRKTIPCSQNSYSCGFPCNKPLPCGRHKCIKACHEGPCQTAGEICKQSCPTPRTQCGHKCLAPCHEGDCPESPCKEMVEVQCECGHRKQHRTCHELVREYSRIATAQLASSMAEIQRGNYMELSEILAPVKLNKTNKTLDCNDECRLVERNRRLAIGLQVRNLDAQQRQTTKYSEFVRTFAKRNPALAKSVYDTLTNLVKLAKESKQKSRSHSFPTMNREKRQLVHELCEMFNVESVSYDAEPNRNVVATAYKEKAWLPATSIMEVVQRESGQRRVPVPNNNAWGLKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-