Cind002728.1
Basic Information
- Insect
- Cacoxenus indagator
- Gene Symbol
- -
- Assembly
- GCA_035041755.1
- Location
- JAWNKX010000169.1:340628-345994[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0089 0.75 10.6 2.1 1 23 162 184 162 184 0.99 2 15 0.038 3.2 8.6 1.3 1 23 190 213 190 213 0.96 3 15 0.0021 0.18 12.5 0.9 1 23 485 507 485 507 0.98 4 15 0.59 50 4.9 2.0 1 23 513 536 513 536 0.93 5 15 0.13 11 6.9 1.5 1 23 560 583 560 583 0.96 6 15 0.058 4.9 8.0 0.4 2 23 643 664 642 664 0.96 7 15 0.0061 0.51 11.1 2.1 5 23 966 984 963 984 0.91 8 15 0.082 6.9 7.6 1.1 1 23 990 1013 990 1013 0.96 9 15 0.16 14 6.6 0.6 2 23 1050 1072 1049 1072 0.95 10 15 0.12 10 7.0 2.3 1 23 1086 1109 1086 1109 0.97 11 15 0.011 0.91 10.3 2.0 1 23 1293 1315 1293 1315 0.98 12 15 8.5e-05 0.0072 17.0 4.2 1 23 1320 1342 1320 1342 0.98 13 15 7e-05 0.0059 17.2 2.4 1 23 1348 1373 1348 1373 0.92 14 15 0.003 0.26 12.1 2.4 1 20 1378 1399 1378 1402 0.94 15 15 0.00062 0.053 14.2 7.2 1 23 1409 1432 1409 1432 0.95
Sequence Information
- Coding Sequence
- ATGTCAATAAAAAGCGAGAAAATCGATTATAAGCTTGCGTGCCGCTGTTGTCTTAAATCGACCGCGGAATTTTATAAATTGGACTCGTACATGATAGACGATTTAAATAATGAGAAAATTAGTTTAATGCAATGCTTAGTCTATAGTATAGGTCATGAAGATAGCCCGGAGTTACCGAAATATATCTGCGCTGGTTGCAGCAAAGCATTGCACATCACGCATAAATTTTTGCAGACCGCGAAGGAAGCGCACGAGATTCTCTGTCGAAAGTTATGTCCGGAACGCTGCAAAAGTAATGTAGTGAGCGGGAAACGTCAATATGGTGTTGATGGCATCCAACACGGCGCAAAATGGAACAATGGATATCGGATGCCTGTCAAAGGTGTTGGTGGTAGTGGTGCAGGTggaacaacatcaacaaaggTGGAGTTTGATGTAAATAGCAGCCATCGAAGTGAGCAGGATAATGTGAAAATAATGCGTTATCGTTGCAAAGTGTGCAGTGAAAAAGTGCACACTGAGAAAGCGTTAAAGGAACACGTGCGCAAGCATTTGGATCTTATAACATACAGTTGTCAATTGTGCAATTATGATACACGTGTGCAACGTAAACTGAACTCTCATTACCGCGATGTTCATAGAATCGAACCAACGCAACAGCAACTCCATCCAAAGGCTCAACCGGATAAACACATTGCCAAATCAGTGACAAAAGAAACGCCACTACCTGTTGAAGATATCCTTGGTCAAACAACTGCATGTACTCTCGAGGATTTGGAGATGCTTATACCGTCAGCAATAACACCGAAGGAAATAGAACAACCACGTCCCATTGAACAACCTGTTAAAGGGTTATTGGAACGTCAACCTCGACCAAGAGGAAGACCGAGAAAAGTAGTCgcggaaaacaaaaattcagttGATCAATTGCAAATGGTCGATCAGAATGTATTGCCAACGAGTCAACAACAATCAACAGTACTGCCCGAATCACTGCAAATGGCAACGGTTATTAGCGATCCAAATAACTTGTGTGCAATTGATTTGCCACAATTCGATATAAATGGTGCATCTATGACCAATGAACTTAGTGTAGGCGCTGAATTTGTTGTCAAAGCCGATGGCTCAGTGGAGCAAGTAATGGGAAATGGCGTTGTAATTGAATATATAAATGCATTGCCAGTAGATGGAATTGTCATTGGTAACGATTTGATGAACACTAACGACGTAAATGGCGCTGTAAGTACCACAGTCCCTGCCATAGGTGTAAATGATATGGGTACGCAGCTTATGGATGTGGATGACATAATCGTCGAGGATACTCCTATGCAACAGCATGTAGACACACAGTGGCAAAATACGCCATTGTCGACGGCGGCCATGATACGTATGAATCTCAAGAAGAATCAATCCAAAATTCAACGCACAAATGAAGACAAGAAGAAAAACCGTTTTAAGTGCAATATCTGCCTGCGTATATTCCCATCAATGCATCGTCTGCGAGCGCATTTGTTAGTGCACAAAAATCTTCCTAGGTACTTTTGTGATATGTGCGCCTACTACACAACGAGAAGTACCGACTTAATGGATCACTATCTTGCGTGTCATGACAAAGAAGCACCAAAAAAACCCTTAACAAAAAAGCCTATACTCGTCTATGATAAACCTAGTGAATGTTACGCCTGTGATATGTGTCTATTCGAGACGCATCAACGTGACAATCTGAAAGTCCACTATCAGGTCAGGCACAAGATACATCCAACCGATGTGCAGTTGAGGCCAAGTTTGCtaaccgattttggttttaataaaGCCGAACCCACAGAAAATGAAGAATTAACACAACCGGTAACCAACAGTGTCGTCACATCCACAATAACCAATTATAAGCCGTTAGAAACGCTGCCAGATTATCCAAACGGTCTAACGTGTGCCATGTGTCCTGAGGTATTCTATTGGCGTAGCAAATATAAGGAACATCTGCGGCAACATGTACTCGCGGACACGATTGGATTGCAACAGCACGAGATAAAAACGACAGTAACAGGAACGGCGGTGCCGATGGCGACAACGACGGCTACAGCGATGACGGATACACTGTACACGCCGCTAACGGCCTTAGAGCAGACACCCCAACAAGAGCTGAACCATCTCCAACACCAGAAACTGCAGACTCATCAATATCAGTCTCATCAAATGAATCCTATTGAAACGGTTTCGTATGTAAATCTGCCCGATGCCGGCGCAGTGACTGTTGAAcatttaacaacaacaccaacgacaTATAGTCTACCAAACAGCTTTGTAAATGGTACATTAGTaaacacaacaaacagcaTTGTGCCGACTATAAATGAGCAGACGTTAACAACAACGTTGACGACAACGACGGAAGAACCATGCAACAGCATGAAAAAAGTGTTAACGACGGATGACCTGGTAGCTAAAGTAGTAGCAGAAGTTGCAGCGGCATCAGCATCAGGATCATCTACGGTTGACGCGCATATCCCAGGAACGTCAGCAGCACCAGTATCAACAATGGAGAACAATCTAACAAATGCTAATGTTTCAATGATCGGCGATATGCAGGATTTCATAGACAGCTCGGATGTGGCGGCCCTGTGTACAATACCCGCCGATGCGATACAAGTTGTTGAGAGTGATGATATTGTTATAGATAGCAATATCgattttaatttctcttttgaGGATTTCGAAgaagacgatgacgacgatgaagaCGATGAAGAGGTTGGCGAAAATGCGCATGTCAATGatgagaataaaaataatgatacAGTAATAGATCAGAACCTCTTACTAAccagcgatgatgatgatctcGATGATTTCGATGATGAACAATCAAAATACCTACAGAAACCATATTGTATATTCTGTCAAAAGAAGTTCACGAGTCAATATCAGTTTGAGAACCACATGTTCCTGCATCGCGGACTGGCGCCGTATCGCTGTGAGATGTGCacaaatttatacaataaaaaacgaGCGCTATTGCGGCACTACAAAGCGGTGCACAAGCGTATGCCAACGCGTGATATGGTACAAGCACGCGGCGATAAGGTAATCTTGGATCGAACGCCCATCGAAACACTGAATGTGGATGAACAAAGACCTTTGACTCTGATGTGCGCCAAGTGTCCGTATGAATGTGTAGACCGTAGAGAGATGCTGTCGCATCTTAAAAGCGGTCATGATGTAGCTGATGAGCAATATATTATTAGCAaacTTCCCTTTGAATGTTCGCGTTGCATACGTTCCTATGCAACAAAGCATTCTGTGGTGCGTCACCTACAGCGTAGTCATCTAGTGGCTACTATTATTGAACAAACAACGGTTAAGACTACCAATTCACAAACGTCCAcgccgacaacaacaatgaatacGCCAATACAGAGGACAGCGTCAGGCCTAACGTCATCAGTGAGAACAACATCAGATGATAATTGTTCCGGCGGCTTCCGAAATATACAAATCCAAACGGGGCCAGAAACAGTAACAAAAGCAGGACAAGAAATAGAAGAATCagttgaacagcaacaacaagtggGAGTTAGTGGATTATATGCTGACGTTAAACATATATTGACCACCactgctacaacaacaagcacataCGAATCGATGGACACTGGCGCTGCTGCGTTGGAATCCTTGTTTAATTTCGACTACAATTATATGGATACGGTGAATGATGATGACAAGCAGCTGCAATCTCAGACGCAGACATTtgatgaaaaagaaaagtctACAGCGACCGCATCCACATCAGCGAAGGTCGATGACACTTCTGTTGGCAAAATGTTGGCGACAGCTCCAACTGCGTTATTGAAACACGATGCCATCAACAACAGCTTTATATGTGGCATTTGTAATTCCCATTATCGTACAGTGGTACTGCTGAAGTATCATATGAAGCGACATTTTGGCCGTGATTATCATTGTGGCCATTGCACTAAGTCATTTGTGACTCGTGTCGAGTTGGACCGCCATAGACGTGTGCACGATGTCTCATTGCGTTTTACATGCGCCGAGCCCAATTGTAATAAAGtattcacatacaaacatcaTTTGACTCGCCACCTGGATGTGGCACATCTGTTGAAGCGTTTCGTTTGCCCAGTTACCAGTTGTGGTCGTCAGTTTACGACACAGACGCAGTTCAAGCGTCACGTGCTTTGCCATAAAGGCAGGCCATTGCCGTATAAGTGCCCACGCTGCGAAAAGTGTTTTAACCGCAGGAAATACCTACGACACCATTCATTGAGAGTGCATAACATCGGTCTAACCGAAAGTGACATAGCTGAGATCTATCGTGCTTGTGTCGGTCAAACCAATCCATGTGATATGAAGTTCTATAATTTCAATGATGTGCAATTGGAATGCTTATTTGTATCAACCAATGAGGCTGCGGCAAAAGACATCGAACCATCGTCGACAGCGCCTGTGCAGCAGTCTGGTCAGCATGTGTCAAGTGATTGCGTCTGA
- Protein Sequence
- MSIKSEKIDYKLACRCCLKSTAEFYKLDSYMIDDLNNEKISLMQCLVYSIGHEDSPELPKYICAGCSKALHITHKFLQTAKEAHEILCRKLCPERCKSNVVSGKRQYGVDGIQHGAKWNNGYRMPVKGVGGSGAGGTTSTKVEFDVNSSHRSEQDNVKIMRYRCKVCSEKVHTEKALKEHVRKHLDLITYSCQLCNYDTRVQRKLNSHYRDVHRIEPTQQQLHPKAQPDKHIAKSVTKETPLPVEDILGQTTACTLEDLEMLIPSAITPKEIEQPRPIEQPVKGLLERQPRPRGRPRKVVAENKNSVDQLQMVDQNVLPTSQQQSTVLPESLQMATVISDPNNLCAIDLPQFDINGASMTNELSVGAEFVVKADGSVEQVMGNGVVIEYINALPVDGIVIGNDLMNTNDVNGAVSTTVPAIGVNDMGTQLMDVDDIIVEDTPMQQHVDTQWQNTPLSTAAMIRMNLKKNQSKIQRTNEDKKKNRFKCNICLRIFPSMHRLRAHLLVHKNLPRYFCDMCAYYTTRSTDLMDHYLACHDKEAPKKPLTKKPILVYDKPSECYACDMCLFETHQRDNLKVHYQVRHKIHPTDVQLRPSLLTDFGFNKAEPTENEELTQPVTNSVVTSTITNYKPLETLPDYPNGLTCAMCPEVFYWRSKYKEHLRQHVLADTIGLQQHEIKTTVTGTAVPMATTTATAMTDTLYTPLTALEQTPQQELNHLQHQKLQTHQYQSHQMNPIETVSYVNLPDAGAVTVEHLTTTPTTYSLPNSFVNGTLVNTTNSIVPTINEQTLTTTLTTTTEEPCNSMKKVLTTDDLVAKVVAEVAAASASGSSTVDAHIPGTSAAPVSTMENNLTNANVSMIGDMQDFIDSSDVAALCTIPADAIQVVESDDIVIDSNIDFNFSFEDFEEDDDDDEDDEEVGENAHVNDENKNNDTVIDQNLLLTSDDDDLDDFDDEQSKYLQKPYCIFCQKKFTSQYQFENHMFLHRGLAPYRCEMCTNLYNKKRALLRHYKAVHKRMPTRDMVQARGDKVILDRTPIETLNVDEQRPLTLMCAKCPYECVDRREMLSHLKSGHDVADEQYIISKLPFECSRCIRSYATKHSVVRHLQRSHLVATIIEQTTVKTTNSQTSTPTTTMNTPIQRTASGLTSSVRTTSDDNCSGGFRNIQIQTGPETVTKAGQEIEESVEQQQQVGVSGLYADVKHILTTTATTTSTYESMDTGAAALESLFNFDYNYMDTVNDDDKQLQSQTQTFDEKEKSTATASTSAKVDDTSVGKMLATAPTALLKHDAINNSFICGICNSHYRTVVLLKYHMKRHFGRDYHCGHCTKSFVTRVELDRHRRVHDVSLRFTCAEPNCNKVFTYKHHLTRHLDVAHLLKRFVCPVTSCGRQFTTQTQFKRHVLCHKGRPLPYKCPRCEKCFNRRKYLRHHSLRVHNIGLTESDIAEIYRACVGQTNPCDMKFYNFNDVQLECLFVSTNEAAAKDIEPSSTAPVQQSGQHVSSDCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -