Cind009801.1
Basic Information
- Insect
- Cacoxenus indagator
- Gene Symbol
- -
- Assembly
- GCA_035041755.1
- Location
- JAWNKX010000242.1:6236919-6239680[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.3 2.8e+02 2.5 0.2 5 15 218 228 217 230 0.86 2 13 0.0041 0.35 11.7 0.3 2 23 273 294 272 294 0.97 3 13 0.002 0.17 12.6 1.0 1 23 380 403 380 403 0.97 4 13 0.12 10 7.0 3.0 1 20 410 429 410 431 0.92 5 13 0.018 1.6 9.6 1.1 1 23 440 462 440 462 0.96 6 13 0.00015 0.013 16.2 0.4 2 23 470 492 469 492 0.96 7 13 1.6e-05 0.0014 19.2 2.3 2 23 500 521 499 521 0.97 8 13 1.6 1.3e+02 3.5 1.1 1 21 561 581 561 582 0.94 9 13 0.061 5.1 8.0 0.6 2 23 592 614 591 614 0.92 10 13 0.00082 0.07 13.8 2.1 2 23 638 660 637 660 0.95 11 13 0.0059 0.5 11.2 1.1 1 23 672 694 672 694 0.96 12 13 0.0019 0.16 12.7 1.3 1 23 700 722 700 722 0.99 13 13 1.5e-06 0.00013 22.5 0.6 1 23 728 750 728 750 0.98
Sequence Information
- Coding Sequence
- ATGGCTTCAACTGACGCCTGTAGAACTTGTTTGGCAAAAACTCGAAAAAAGCATTTGCAATTGGATTCATTAAAATATCGTGGAAAGTCATTAATCGATTTGCTGGTGGAGCTAACGAAAATTGATATGAATATGGAGCATACCAATAAGCTGCCTAAGCAATTGTGCTCCAGTTGTTTTCGTAAACTTCAAATATCCTACGACTTTGTTCTGCAAGCCCGTGAGGCAAATGATAAGTTAATGGCATCCTTCAACGAGTTGGAATCGGAAACAGATATGAAACTGAAAGCCGTTGAAGGGAGCAAACGTCTTCCAACAGATTCGACGGAAAACTGTGCGGAGCAGTTGGTGGAAGTTAAGCTAGAGGAAGAAATAAGAGGAGATTGGCCTGGGGATTTTACTGCAATGTTATTAGAAGATAACTTAAAGGAAGAGGAAAAAAGTGCTTATAATGTAGAACTGGGGAAGGTAATGGAAAGTTCACCAGATCCTTTGATTCTGATGCAAAGAGGTATCCCGAAAATTCCAATGGCGGAAGAATGTTTTAGTGCTCACGAAGAAACTTCGAGCTACGATGAGCTTGATGAATTACCACTTCAAGAACGaagaattaaatcaaaattaggGAAACGTTCAAAGAAAACCATTCAACATTGCAAACGCAAATTCCgtcaaaaagacaaaatggAGCCCCTATTGAAAAAGCCGGTCGCCGAGCAgccaaactttttaaaatacacCAAAACTCTTCCTGAACATAAACAAGCCAAGGCAGTCGACATTAATCTTTGCAAGCCAAATGGTTACAAGTCAATTCAGTGCATGATTTGTTTGCAAAGATATACCAGGGTAGCTGAGTTGCGTTATCACATGAAAGAGCACCCTATTGTATCCTTCGCGGAACGCTCTCAGGAGACATTGCAAGAGATTACCGATTCCTTTTATGTTAACCGCAAAGTTTCAACAGAAGCCGAATTGGTGGCCTATATACAAAGAGACTTGGGCGCTGGGAATTACAACAATTTCTACTCCATTACGAATCAATCTGGCTATGAGTTAAGTCTGTCAAGTTCAGATACTGAAAGCGATTTGGATTGTGAAACGGAGGAGCATGAAACGACTGCACCAAGAAATCAATATACTTGTGATTTGTGTAAAGCGCAGTTTGGACGCAAATATCAAGTCTTCGAACACCAAAGGCAAGGCCACGAATGGCAGGATGCGACTCACGTGTGCAGTCGTTGTAAGGCGCGTTTTGTAAGCGAGCATATGCTGACGCATCACAACAAATCGCAATGCAAGAACACTCAGAAGCGCTTCATGTGCCGTAGATGCCCCCTCAGATTTCGGTGGAAAAACAACCTGAGGGCTCACTATCTCGAGCATGGAGAAAATttGAAGCCTTTGACATGTGTGGAATGCAACCGAAGCTACGTTGACAAAAAATCACTTACCATACACAAGCTCACTGTACACACGGATGAGTCAAAAATTTTACCGTGTCATTGGTGCAATTACAAATTCTATCGTTGGGACTACTTGCTAAAGCATTTAAAACGCCATGGTTTAGAGGAGAAGGATATACCACTCGGTGTTACCTTGAAAGCGGCTACCTCTAAGGCGAATGGCTCTAAGCAAATCCAATGTAAAACCTTCATGCATCGCTTTGAGCAGCTGCCGTTCTCGTGTGAGAAGTGCATATTCAAAAGTGTATCAAAGGATTTACTCGAGCACCACAAGCGCTTGCAATGTATGAACGCAGAGAAGCAGTTGTCATGCGCGAAATGCGGATTCAAATTCATGTGGCCCGAAAACCTGGCGcggcatttgcatttgcagcATACAAGTGAAAACAGTAAAAACTGTGCCACGAATAATACGGAGCCCGCTGTTGTTGAGCCAGCGCCTTTGAAATGCCCTCACTGCGATCGGTGCTACGTGCTGCAGATACGTCTCAATAACCATATACGTGACGTGCATATCGAAGGCGATCGTAGGAAGAAGAGTACCGCTTACCTCTGCTCGTTGTGTGGCAAGGCAACAAGGTGTAATGCCGAATTGGTTACGCACATGCAGCGGCACAATGGTGAAAAACCCTACAAATGTGATATATGTGAGAGGTCATTTCTACGTTATCAGGATATGCTTACACATCGACGCATACATACAGGTGAAAAACCTTACAATTGCACAGCTTGTGGTAAAGATTTCGCACGATCGGACAAACTGAAGCGTCACATTTTAACGCATAGAAGTAAAGAAGTAAGCGATATTTTGAATGAAACGATCGCAACTAACATCTAG
- Protein Sequence
- MASTDACRTCLAKTRKKHLQLDSLKYRGKSLIDLLVELTKIDMNMEHTNKLPKQLCSSCFRKLQISYDFVLQAREANDKLMASFNELESETDMKLKAVEGSKRLPTDSTENCAEQLVEVKLEEEIRGDWPGDFTAMLLEDNLKEEEKSAYNVELGKVMESSPDPLILMQRGIPKIPMAEECFSAHEETSSYDELDELPLQERRIKSKLGKRSKKTIQHCKRKFRQKDKMEPLLKKPVAEQPNFLKYTKTLPEHKQAKAVDINLCKPNGYKSIQCMICLQRYTRVAELRYHMKEHPIVSFAERSQETLQEITDSFYVNRKVSTEAELVAYIQRDLGAGNYNNFYSITNQSGYELSLSSSDTESDLDCETEEHETTAPRNQYTCDLCKAQFGRKYQVFEHQRQGHEWQDATHVCSRCKARFVSEHMLTHHNKSQCKNTQKRFMCRRCPLRFRWKNNLRAHYLEHGENLKPLTCVECNRSYVDKKSLTIHKLTVHTDESKILPCHWCNYKFYRWDYLLKHLKRHGLEEKDIPLGVTLKAATSKANGSKQIQCKTFMHRFEQLPFSCEKCIFKSVSKDLLEHHKRLQCMNAEKQLSCAKCGFKFMWPENLARHLHLQHTSENSKNCATNNTEPAVVEPAPLKCPHCDRCYVLQIRLNNHIRDVHIEGDRRKKSTAYLCSLCGKATRCNAELVTHMQRHNGEKPYKCDICERSFLRYQDMLTHRRIHTGEKPYNCTACGKDFARSDKLKRHILTHRSKEVSDILNETIATNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -