Cind014381.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cacoxenus indagator
Gene Symbol
salm
Assembly
GCA_035041755.1
Location
JAWNKX010000571.1:468312-486790[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 4.8e-06 0.00041 20.9 0.9 1 23 532 554 532 554 0.98
2 7 9.5e-06 0.00081 19.9 2.1 1 23 560 582 560 582 0.98
3 7 0.016 1.4 9.8 1.5 2 23 967 988 966 988 0.98
4 7 6.8e-08 5.8e-06 26.7 0.5 1 23 994 1016 994 1016 0.98
5 7 0.00021 0.018 15.7 2.3 1 23 1026 1048 1026 1048 0.98
6 7 0.028 2.3 9.0 2.9 2 23 1470 1491 1469 1491 0.97
7 7 3.6e-08 3e-06 27.6 1.4 1 23 1497 1519 1497 1519 0.99

Sequence Information

Coding Sequence
ATGCAAAATCATTTATCAACTGTGCTGTGTGCAATGCGTAGTGACTTTAAAGATAATCACCAGGAGACCATCAATAAAATGATACAATTTGGCACCGTTAAGTATGGCATCGTTAAACAACTGAAAGATCGTGCAAGGAGCACAGAATTGGATGCTGCGGGCAGCGATCAGGAGGAGAATGGTGCCTGCTCACCAATTGCGGCTACGGGTAGCGCAAGCGCGGGCAGCAGTCCACAACGCGAGAGCGCTGAGAGCATTGCCGCAGAGATGAGCAGTCGCAGTACGCCTGCCAAAACGCCCACAGAAGAAGCCATGGAGACTGGTGTCGCTGGCGATGATGCTGAAATGTTGGATGAGCAGGATGAGCAGGAAGAGGAGGAGAGTGGCGCAGAGGCAGACGCCGAGGATCAcaaacacaataataataacaacaacaataatattgtTATATCAAAGGAAGCATTAGAAAGCACCGCTGAAAAAGAGCTGGACAGTGCGCAGCTAACAAACGATGAACACAGCGCGCTGAATATTGCAAGCGATGAGTGTGAGACGCAAGAGCCACACGAGAAGATGCCAAGATTGGAAGCTGCGTTGAACTCACGCGCATCCACACCAAAGCAGCACGAAGATGTCGACATGGTTgaagcagcatcagcagcgtcagcgtcagcgtcagcgtcagcgtcagcagcagcaggagcaGAGGCAAACGCAATGACGAAGCCCACCGCAACAACGCCACAAACCAACAATGCCAATCTTGCTGGTTTACCCGCTGGTCTGCCAGCGCAATTCGGTAGCACACCCGTCACGCTGGAGGCCATACAAAACATGCAGATGGCCATCGCACAATTTGCGGCCAAGACAATCGCCAATGGTGCTAGCGGCGCTGATAATGAGGCGGCCATGAAACAGTTGGCCTTCTTGCAACAGACGCTCTTCAatctgcagcagcagcaactctTCCAAATACAACTCATACAGCAATTGCAATCGCAGTTGGCCATGAATCAGAACCAAAAGAACGGCGACGGTGTTGGCGCCGCTGAAatcgacgacgatgacgatgaggaGGAGCGTGAGGATGGAGAGGAGGACACATATGAGGAAGAGGAACGCATTGCTCAACTGGAGTTGCGTCAAAGGGCCGAGGCGCGCATGGCCGAGGCAAAGGCACGTCAGCATCTGATCAATGCGGGCGTGCCGGAAGCGGGTGTCGTGGAAACGCTGAAGCGCAAACGTGAAGCTGAAGATGccacaacaacgtcaacaacGTCAACAGCGTCGACCTTGGAACCTGCTAGCCAACGCTTGAGTCTGGAGCCGAAATCAATTTCAGCCGCAGATTCGCTGGCCAAGCTGAAGGCGATGGAGAACATGCCGTTGCCGTATGGCTCTGATCTGGCATCGACTATTATAACCAATCACGATGATCTGCCGCAGCCGAATTCGCTGGAAATGTTGCAGAAGCGCGCGCAGGAAGTGCTCGACTCAGCATCGCAGGGCATATTGGCGAACAACATGGCCGATGAGTTCGCCTTTAACGATAAGAACGGCGACGGTAAGAATCGCAATGAACCTTTCTTTAAGCATCGTTGCCGCTACTGTGGCAAGGTCTTTGGCTCCGACTCCGCGTTACAGATACACATACGCTCGCACACCGGCGAGCGTCCATTCAAGTGCAACGTCTGCGGCAGTCGCTTCACGACCAAGGGCAATCTGAAGGTGCATTTCCAAAGGCATGCGCAAAAATTCCCGCACGTACCAATGAATGCCACACCCATACCAGAGCACATGGACAAATTCCATCCGCCGCTGTTGGATCAAATGTCGCCAGACAGTTCGCCCACGCACTCGCCAGCCGCCATGCCCCAGCAAATGCCGCCAGTCTCATTGCCCATGCCTTTCCCGCCGGGCGCCGGTTTTCCCAGTCTACACAATCTCTATCGTCCGCCAATGGAGATACTAAAATCGTTGGgcgccgccgctgctgctgcaggtGGTGGCAGCAGTGCACTGTCGAATCCCTTCTTCCCGCAATTGCACAGTGGTTTGAGCGATAGCAACGCCGTGGCGGCGGCAGCGGTGCAGGCACAGGTTGCAGCACAGGCCGCACTCAAACATAATCAGGATATGCCCACAGATCTGCGTAAGTCATCAGAGCCAAGTTCACCTGAGCTGCCGGCAGCGTCAGTGAAAAGCGAACCGCATGAAGAGAAAAcggaacagcagcagcagcagcagcagcaacagcaggaGCAAGATTATGAGGGTACTTCATGTGCTGAACGAGGAGAGCTGAGCGAGCAGAATAACTTGCCGCTCGAGGTTAAGATTAAAGAGGAACGCATGGAAGAAGACTCACAACAGCCAGAGGACATGACGCGTCCAACCTCACCTCGGCGTCTTGACGCAATATCAGCTACACCCACACCCACCTCCGCATCTGTCGCGCTAGCCGGCGCTAGCCGTTCAAGCGTTGCACGCTCGCCACATACACCGACAAGTAAAGCTACGCTGCCGCCGGTCGTGCAACCGGTGCAGCCACCGACAATCATACACCCACAGCCTTCGCCAGGTTCACAGCATCACTTCGATCATTTGCCCACACCCGGCCAGTTGCCACCGTCGATGCAACACCGCGAAGACTTTTTCGCCGAACGTTTTCCGCTGAACTTCACCAAAACACTTTCGCCCGAGCATAACTCGCCGATTCGCTCACCGGCACACATTCCCCGCTCGCCCTTCTTTAATCCGATCAAACATGAATTGGCACTGCTGCCACGCCCCCATAGCAATGACAACTCATGGGAGAATTTCATCGAAGTCTCAAATACCTCGGAAACGATGAAACTGAAGGAGTTGATGAAGAACAAAAAGATCACCGATCCGAACCAGTGCGTCGTCTGCGATCGCGTGCTCTCCTGCAAGAGCGCCCTGCAGATGCACTACCGCACGCACACCGGCGAGCGCCCGTTCAAGTGTCGCATCTGTGGACGCGCCTTCACCACAAAAGGCAACCTCAAGACGCACATGGCCGTGCATAAGATACGGCCGCCAATGCGCAACTTTCATCAGTGCCCGGTGTGCCACAAGAAGTACTCGAATGCGCTGGTGCTGCAGCAGCACATACGCCTGCATACAGGTGAGCCAACTGATCTGACGCCGGAGCAGATACAAGCCGCAGAAATACGCGATCCACCGCGCGCCATGATGCCTGGCCCTTTCATGAATCCCTTCGCTGCAGCGGCATTCCATTTCGGTGCAATGCCTGGTGCGCCGCATGGCATGCCAGGCGCTCATGTCATGGGACCTGGCATGCCGCATAACGGCACACTTGGCTCCGAGTCCTCACAAGGCGACATGGATGAGAATATCGATTGCGGCGATGATTACGATGATGACGTATCCTCGGAGCACTTGTCCAACAGCAATGACCAGGATGCCAATGAGCGTTCACGCTCCGGCGACGATTTCAAGGGCCTGCTATTCGAACAGAAGCTGCGCATTGACTCGGCGGGCATCGTCAATACAACGCCACGACCACGCTCGGCGGCGAGCAATGCCCATTCCCAGCACTCGGCACCCACAAGTCCGAATTCCCTGCCAAAGCTGAGTTCTACACGCGCCAGTTGTTCGCCAGCGCGTTCCGAGGCATCACAGGGTGCGCTCGATCTCACGCCACGTGCAATGGCCGGTGCAACAACGGCGCCAACAACGCACGCCAGCGGCGGCGTCAACAGGCGTTCACCACAACCCACCAGTGCGGTCAATAAGAAATCAGCTACGCCGCCAATGCACAATCCGCCCGCCAAGAGTCCCCACCTGCCGCACTATCCACATGCCTCGGCTGCACCAAAGCTTAGTCCCTCAGCGCTGCTACCCTCACCGCTGGCGCCGACGGTTGGCCTAGATTGCCTGCCACCCAGCCTGCAACATCatctgcaacagcaacatcagcatctCATGCAACAGCAAGCTGCCGTAGCCGCTGCTGCACAGCACCACCAGCAGATGCAGCAGCATGCCGCCGCTCTGCACCACGAACATTTGCGTCGCGAAGCTGCCGCCGAGGCGCATCACAAGGCTgttcatcaacaacaacaacagcagcaacaacaacaacaacaacaacaacttcaactccACTCTCAGTTGTCACCGCAATCAGCGCAACACATAGTGCCACCAACGCCGACAACACAAGTCGGTgtaccaccaccgccgccaccgccCAATCCGCTGATGGCAGCGCGTCCACCGTTCGGCATGTTCCCCAACCTGCCGCTATTCCCGCCATCAACAGCGCAGAACATGTGCAACGCCATGAATCAGATTGCGCAATCGGTAATGCCCGCGGCGCCCTTCAACCCACTGGCGCTCTCCGGCGTGCGCGGCAGCACCACATGCGGCATCTGCTACAAGACATTCCCCTGCCATTCGGCGCTCGAGATACACTATCGCAGTCACACAAAGGAGCGACCCTTCAAGTGCACCATCTGCGATCGCGGCTTTACGACTAAGGGCAATCTCAAACAGCACATGTTAACGCATAAGATACGTGACATGGAGCAGGAAACTTTCCGGAATCGTGCCGTAAAGTATATGAATGACTGGCCggagtaa
Protein Sequence
MQNHLSTVLCAMRSDFKDNHQETINKMIQFGTVKYGIVKQLKDRARSTELDAAGSDQEENGACSPIAATGSASAGSSPQRESAESIAAEMSSRSTPAKTPTEEAMETGVAGDDAEMLDEQDEQEEEESGAEADAEDHKHNNNNNNNNIVISKEALESTAEKELDSAQLTNDEHSALNIASDECETQEPHEKMPRLEAALNSRASTPKQHEDVDMVEAASAASASASASASAAAGAEANAMTKPTATTPQTNNANLAGLPAGLPAQFGSTPVTLEAIQNMQMAIAQFAAKTIANGASGADNEAAMKQLAFLQQTLFNLQQQQLFQIQLIQQLQSQLAMNQNQKNGDGVGAAEIDDDDDEEEREDGEEDTYEEEERIAQLELRQRAEARMAEAKARQHLINAGVPEAGVVETLKRKREAEDATTTSTTSTASTLEPASQRLSLEPKSISAADSLAKLKAMENMPLPYGSDLASTIITNHDDLPQPNSLEMLQKRAQEVLDSASQGILANNMADEFAFNDKNGDGKNRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHAQKFPHVPMNATPIPEHMDKFHPPLLDQMSPDSSPTHSPAAMPQQMPPVSLPMPFPPGAGFPSLHNLYRPPMEILKSLGAAAAAAGGGSSALSNPFFPQLHSGLSDSNAVAAAAVQAQVAAQAALKHNQDMPTDLRKSSEPSSPELPAASVKSEPHEEKTEQQQQQQQQQQEQDYEGTSCAERGELSEQNNLPLEVKIKEERMEEDSQQPEDMTRPTSPRRLDAISATPTPTSASVALAGASRSSVARSPHTPTSKATLPPVVQPVQPPTIIHPQPSPGSQHHFDHLPTPGQLPPSMQHREDFFAERFPLNFTKTLSPEHNSPIRSPAHIPRSPFFNPIKHELALLPRPHSNDNSWENFIEVSNTSETMKLKELMKNKKITDPNQCVVCDRVLSCKSALQMHYRTHTGERPFKCRICGRAFTTKGNLKTHMAVHKIRPPMRNFHQCPVCHKKYSNALVLQQHIRLHTGEPTDLTPEQIQAAEIRDPPRAMMPGPFMNPFAAAAFHFGAMPGAPHGMPGAHVMGPGMPHNGTLGSESSQGDMDENIDCGDDYDDDVSSEHLSNSNDQDANERSRSGDDFKGLLFEQKLRIDSAGIVNTTPRPRSAASNAHSQHSAPTSPNSLPKLSSTRASCSPARSEASQGALDLTPRAMAGATTAPTTHASGGVNRRSPQPTSAVNKKSATPPMHNPPAKSPHLPHYPHASAAPKLSPSALLPSPLAPTVGLDCLPPSLQHHLQQQHQHLMQQQAAVAAAAQHHQQMQQHAAALHHEHLRREAAAEAHHKAVHQQQQQQQQQQQQQQLQLHSQLSPQSAQHIVPPTPTTQVGVPPPPPPPNPLMAARPPFGMFPNLPLFPPSTAQNMCNAMNQIAQSVMPAAPFNPLALSGVRGSTTCGICYKTFPCHSALEIHYRSHTKERPFKCTICDRGFTTKGNLKQHMLTHKIRDMEQETFRNRAVKYMNDWPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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