Cind009241.2
Basic Information
- Insect
- Cacoxenus indagator
- Gene Symbol
- -
- Assembly
- GCA_035041755.1
- Location
- JAWNKX010000240.1:5823153-5831230[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.5 42 5.1 4.0 2 19 364 381 364 383 0.91 2 15 5.5 4.6e+02 1.8 0.9 2 23 396 417 395 417 0.93 3 15 0.024 2 9.3 1.0 1 19 453 471 453 473 0.93 4 15 0.00022 0.019 15.6 0.2 5 23 483 502 482 502 0.95 5 15 5.4e-05 0.0046 17.6 1.2 2 23 507 528 506 528 0.98 6 15 0.073 6.2 7.7 1.5 1 21 536 556 536 557 0.94 7 15 0.033 2.8 8.8 0.3 1 22 576 597 576 600 0.91 8 15 0.071 6 7.8 5.2 1 21 605 625 605 629 0.90 9 15 0.00087 0.074 13.8 1.5 1 23 640 665 640 665 0.97 10 15 0.0013 0.11 13.3 1.4 1 23 689 712 689 712 0.96 11 15 0.0036 0.3 11.8 0.1 3 23 719 740 718 740 0.93 12 15 0.0012 0.099 13.4 0.3 2 23 744 766 743 766 0.96 13 15 0.0016 0.14 12.9 2.3 1 23 772 794 772 794 0.96 14 15 0.012 0.98 10.2 1.0 1 23 798 821 798 821 0.93 15 15 4.8e-05 0.004 17.7 2.7 1 23 827 849 827 849 0.98
Sequence Information
- Coding Sequence
- ATGTCGCGCTGTTTGTACTGTAAAACATCGGATCCGTTTACGAAATATCATGAAATATTCGATGAGCTGGGCATAAGATTGGAATTGCCCAAATTAGTGaacatttatttcaaagtTGATGTGACATTAGAATCAGTTAACGATACTGTTCTTTGCGAGCCATGTTTAGGCGAACTGATCAAATCTTTTGGGGTGGATgcttataataaacaaaaatctgcAATTTCTCCAAAGAATCTACTAAAAGAAACTCAACCAAAAGTACATAATTTTACTgttaaagaacaaaaaagacTAGTTGAAGGGGCGGCAGATGTAATAATCTCAGCAGAGCCACATACAAagctacaaaagaaaaaaactttggTACTATATACAGCTAAAGCAGAATCTTCAAAAAGTGCGGAACTGAAATACTCCTCGTTTCCTCAACTTGAAGAATCCATACGAAACCCCGAATttagaaaatttcaacatGACACGATTGTCGATGAATATGAAGCCACTTTTAACAACGTCCGGCGAAAAAACAGTTTGCAATCAATCAGTAATTATTATGGCGAAGACGATGTAGAAATACAGAACactgaaataacttttaaggATATCAAAAATTGCCAAATCGTGACTAGACAGCAGTATGAGGATGAAAATGCTCAAAATGAAACCACAATTGAATATGTGGATTTCATTGGTGATGCCCATTCACAAGGAGATAAATCTGTTATGAAAGTGAAGGAATTTAAAACTAACAGTGACATATGTATTGGggataaaattgatttaattgcCTTGACTCCGCTCATAGCAGAGGTTGAGGCGGTTGATGTGTCAGCGTACCTGGACGAAGCCATCAAAAGTGATTTAACATCACTTAAGTTTCAGTGGTCTACTGCTTGCCATATGTGCTGCTTGGAATGGAAAACATTTGAAACTTTATACGAACATATTTGCAAGGTGCACTCTTTGCCTAATGACTATTATTCGTGTTCTGCGGAAGATTGTTTTGATCAAATACAAGGCAAGAAAAGACTAGCACGCCACATGGTTTTGAAGCATGCACCTTTGGAGGAATTACAGATCTATGGCAGTTGTCCGCATTGCttgaaaacattttcgaattttgtggttttcaATAAGCACTCGTGTGCTCGTCCGATGAAACGGCGTCGTGGCTTACGAATGTATTGTGAAAAGTGCGCTATATATTTTCCATCTAAGAAACGTTTGCTATTTCATATGCAATTCCATTTGGATAAGTGCCGCCCAAGGGTTTGCTTGATTTGCGActatacaaacaataatatcGAGGAGCTCTTCGAACATATAAATTGCGACCACGAGCCCGAAGGCAATTACGTATGCAGGATCTGCGATCGTGTcttcaataaagaaaaaacatttttagatCACAACCACGCTAATAATATTGACTACAACAGCGATGAATGCAATAAACAATTCAGCAAACAGTCAAGTCTAGTTGCACATATTAAACGTATACACACATACCAGAAGAAATGCGATGTATGTAACAAGGAGTTTACGGAGGAGTCGCAATATCGACAACATTTGAAAGTACATTCCAATATGGATTTAACGTTGCATACTTGTAATAATTGCGGCTTGGTTCGGTGTAACCGCGATGAATTTTTGCAACATGAACGCTGGACCAATACGAATTGCCACGATACCAAAATTGAAGAAGGGAACCTTTCATACGTATACAGCTGCGAGTTTTGCTCACTTGACTTCAGAGCTAAAAATGATCTACAGTTGCATCGTTTAAGCGGGGTTCATAATGATGGTTTATACAAATGCCTTACATGCGACAAGAAGTTTTCAACAATGAAACTTTATCGAGGGCACAAGAAGCACACACGACATGATTGGAAGAAAGGCAATTTATCTGGTCTTTACATGTGTAACTTTAACGACTGCGAAGAGACCTATTCGCGGTGGAATTCACTTTACATGCATAAGCGGCGTCAACACTCTTTTTCCCAGGTGGATGAAGTAGACACGGAGGATGATACGGTAACAGTTGAACTAAAGAAAACGGCATTCGTGTGTCAGTTTTGTGACAAAAACTGTCCAACACAAATGTCCCTTTCGGTGCACATTGCAAGGCGTCACAATAATAAAAATGTTGCTTGTTCGTTTTGTGGCGCTACTTTTAAGACTGATGCTGCTTTGAAAGATCACATTGATTATAGGCACGTGCAGATCGAGTGCACAAAATGccaaaaagtgataaaaaacCGACGAAATTACGAAGTACACGAGCGCGTAGTGCATATGGCACAGAAACGATATTTTTGCAAGATTTGCGAAAAGGGTTTCTATCATAAGAGTGACAAAGAAGCCCATGCAAAGTTGCACGAGAAAACATTTTCCTGCGAAGAGTGCAAATTCACAACGAGCTACTCCAAATCGCTGGAAATACATTTTGCAAGTATGCATCGGCATGAATTCGCACATGAATGCCCATTatgtaaaaagaaatttgGTCGAAAACAAGCGCTCAACATGCACCTTAAACGACACTCTCACTTAACAACATTTCACAGCTGGAATGCTCTTGACAGTGGTAGCGATATAGGTTTTGCTACTCAAGCAGATCGTAGTATAGAACTCCAAGTAGTCTCCAACTCCAGAAGTGAAATGTCTGGCTTATCAAATGATAATGGTGATCGTAGTCAAGACGATTATAAAGTATCAGAAGACATTGTGAAAGATTGCGATGAGAGTGAATTACATGAAATGGTGGATGATGGCAAAGAGGATTATTATGAGGGGGCTACGGAGTACATTATTGAGGATTTCGGCGACGATGAGGAATTGCAGAAGGACTGGAAATATGTGCTCGCCAATGAAGAAGACAAGTAA
- Protein Sequence
- MSRCLYCKTSDPFTKYHEIFDELGIRLELPKLVNIYFKVDVTLESVNDTVLCEPCLGELIKSFGVDAYNKQKSAISPKNLLKETQPKVHNFTVKEQKRLVEGAADVIISAEPHTKLQKKKTLVLYTAKAESSKSAELKYSSFPQLEESIRNPEFRKFQHDTIVDEYEATFNNVRRKNSLQSISNYYGEDDVEIQNTEITFKDIKNCQIVTRQQYEDENAQNETTIEYVDFIGDAHSQGDKSVMKVKEFKTNSDICIGDKIDLIALTPLIAEVEAVDVSAYLDEAIKSDLTSLKFQWSTACHMCCLEWKTFETLYEHICKVHSLPNDYYSCSAEDCFDQIQGKKRLARHMVLKHAPLEELQIYGSCPHCLKTFSNFVVFNKHSCARPMKRRRGLRMYCEKCAIYFPSKKRLLFHMQFHLDKCRPRVCLICDYTNNNIEELFEHINCDHEPEGNYVCRICDRVFNKEKTFLDHNHANNIDYNSDECNKQFSKQSSLVAHIKRIHTYQKKCDVCNKEFTEESQYRQHLKVHSNMDLTLHTCNNCGLVRCNRDEFLQHERWTNTNCHDTKIEEGNLSYVYSCEFCSLDFRAKNDLQLHRLSGVHNDGLYKCLTCDKKFSTMKLYRGHKKHTRHDWKKGNLSGLYMCNFNDCEETYSRWNSLYMHKRRQHSFSQVDEVDTEDDTVTVELKKTAFVCQFCDKNCPTQMSLSVHIARRHNNKNVACSFCGATFKTDAALKDHIDYRHVQIECTKCQKVIKNRRNYEVHERVVHMAQKRYFCKICEKGFYHKSDKEAHAKLHEKTFSCEECKFTTSYSKSLEIHFASMHRHEFAHECPLCKKKFGRKQALNMHLKRHSHLTTFHSWNALDSGSDIGFATQADRSIELQVVSNSRSEMSGLSNDNGDRSQDDYKVSEDIVKDCDESELHEMVDDGKEDYYEGATEYIIEDFGDDEELQKDWKYVLANEEDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -