Cind004173.1
Basic Information
- Insect
- Cacoxenus indagator
- Gene Symbol
- Lip3
- Assembly
- GCA_035041755.1
- Location
- JAWNKX010000180.1:346688-356589[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.016 1.3 9.8 0.3 2 23 404 425 403 425 0.96 2 15 0.019 1.6 9.6 2.0 1 23 431 454 431 454 0.93 3 15 0.096 8.2 7.3 0.3 3 23 459 482 457 482 0.92 4 15 0.0082 0.69 10.7 0.1 2 21 491 510 490 511 0.93 5 15 6.2e-05 0.0053 17.4 2.5 1 23 519 541 519 541 0.98 6 15 0.012 1 10.1 2.7 1 23 547 569 547 569 0.97 7 15 0.00031 0.026 15.2 0.5 1 23 575 597 575 597 0.95 8 15 0.072 6.1 7.7 0.3 1 23 1049 1071 1049 1071 0.96 9 15 0.034 2.9 8.8 2.4 1 23 1079 1103 1079 1103 0.95 10 15 0.0035 0.3 11.9 2.8 2 23 1108 1129 1107 1130 0.94 11 15 0.00013 0.011 16.3 0.2 2 21 1143 1162 1142 1163 0.94 12 15 0.0052 0.44 11.3 0.3 1 23 1171 1193 1171 1193 0.97 13 15 1.4e-06 0.00012 22.6 1.8 1 23 1199 1222 1199 1222 0.98 14 15 9.7e-05 0.0082 16.8 1.4 1 23 1228 1250 1228 1250 0.98 15 15 0.00027 0.023 15.4 2.2 1 23 1256 1278 1256 1278 0.95
Sequence Information
- Coding Sequence
- ATGCTTTGCGAGCTACCGATTTATGCATTATCTCTTTTAATAAGTCTGCTGGTATCActtacaaatgcacaaacgaaaCTTGTTGGGGCCCACAAAGTTACGGCAACACTCATCACAACCCAAAACTATCCCGTCGAGGAGCACATTGTTCACACGCCGGACGGTTACATATTGACGATCTACCGGATACCTAATTCATCGAAGCAGCCTCAGTTCAACACAACTACTAAAAAGCCGGTCGTATTTTTACAGCACGGCATACTCGGTGCCTCAGATGATTGGATAATAAATGAACCGAAAACGTCACTGGCCTACATGTTTGCCGACGCTGGCTTCGACGTCTGGTTAGGCAATGCTCGTGGTAACACGTACTCACGGcagcacaaacacatacacccGGACTCCTCAGATTTCTGGAAATTCAGTTGGCATGAAATAGGTGTCTACGATCTCGCTGCCATGTTGGACTATGCTCTTGCCGAGACAAAATCAAGCTCTCTACATTTCGTAGCGCATTCCCAAGGAACTACCGCATTCTTTGTTTTGATGTCATCACTCCCCTGGTACAACGACAAAGTGCGCTCAGCGCATCTCTTAGCACCGATTGCATTTATGCGAAACCATGCCTTTCTACTGTCCAAATTGGGCGGAGTATTTCTCGGATCACCGTCGTTCCTGAGTTGGATAGTAGCTGGAATGGAGTTGTTACCGATAACTAGCGctcaaaagtttttttgcgAATATGTATGCTCGGTAGAGTCCCGTATCAACTTTTTGTGTTCCGGATTACTAGAATTCATTGGCGGTTGGGGCTCTCGTCATTTAAACCACacaCTCCTAACGCATGTATGTGAGACTCATCCCGCTGGTTCATCAACAACTCAAATTCTACATTATCTTCAGTTGTACAAATCCGGCGATTTTCGACAGTACGACCATGGCattgatttaaatataaagCTTTACAATCAAGCTACTCCCCCCTCATATAATATACGTAGTATTGTCAGCTGTGTGCATATGTACTACAGCGAAAATGACTACATGTCCTCTGTTGAGGATGTTGAACTCTTGGCAAACTCCGAAGGTGTTGCGGGTGCGACGTCAACGTTGTCTGCGTCGGCTACAAAGAACTCCAAGGGAGAGCAATCACGTACTACAGTGCAAATTACCACGGTGGAGATTTCCACGGACGGAGTGCCCAAGTTACACTGCCCTGTGTGTGATAAAGCATTAATTTCGTTGAATGGTTATGTGAAACACGTTAAGAAGCACGAACCTCCCGGTGGATTTCTGTGCCGGTACTGTGAGGGTCGCTTCTGTTCAGAAGAGGAGTTAAAAAAGCATCTTGACAAAGTACATACTACAATCGCATGTAGGATAtgtaaaaataacacaacCTTTACCAATGAAAACGATTATCGCGAACATATTCGCATTGTACATAATGGTGTGGACAGGGAGATGCTTACTTGTGACAAATGCGGGGCGGAGTACAAAACTTTGGAGCCGTTTAAGCGGCATATGGATACGCAATGTGGAACTGTCAAACCTTTTAAGTGTGACCAGTGCTTGATGTCATTTGTAACCAAATACAACCTCAAGCAACATAAGGAAACGCATAACGGCGAAAGAAAGTTCTGTTGTAGCTATTGTGGAAAGAATTTTCTGCAGAAAGGCCGCCTTGTCGAACATGAACGTTCCCATACCGGTGAAAAGCCTTACAAATGTGATGTTTGTGGTAAAGCCTTTGCACATCGTGAGAGCATCGTCACACACTCATCTATACACACTGGAATACGTCTTGTGGAGTGTAGATGCTGCCATTCGCGTTTTTCATGCTATTCAAATTTGATTAAGCATCGAAGAACTCGCCCCGACACCTGTGGACTACCCGAATTTGATCCTCCCAAGAATCGTGTGCGTACACACAGATCCCGAATTCCTCCAACCCTTAATCCAACGTCTGAGATAAAAGTAagcaatttcaacaaaattatcaAACCAAGTGATttagaaaaagagaaagagtTTAGAAAAGTGgtgaagcagaaaaataatgaCGAGCCAGCAAGGAAACCACGTAAGCGCCGCAGTGAGGGGCAAAGCAAAAAGGGAAGACAAGCAAAAAAGTATAAAGAGGCTTGTGGACCATCAGAAGATAGCGACTGCGTTGAGGAGTCATACTGCAGTGAAGCACATTCCGAAAGCGAAGATGGGTCAATAGTTAAACGTCAGACACGTCAAAGTAATGCCAATCATACACTGAAAGATGAGGttgcatctgaaaatttaagtGATTTTGATAATAACTGCTCTGACTTGCACGCGGACAGTGCAAGTGGTGATAAAGACATCTGCAAACTAACATCACCTGTCAAACAGGAAACGGAGGAGTCTCGAATTGAAAGTTTTGAATACACTGACTCTAGTCAGTTTGTTGAGCCCTGCTGTGACCTAAAAGAAGAGGAAGGAAATATATTCAATGAAAAGGATAAATTGATCGACGTTCTTCTTAAGGAAAACAATGAATCAGATGAACATAATGACGGTATAGACTCAACGCCACTTAAGAAATCATTACAGGCGGTAAAATTAGAGaatgatattaaaaatattcttgaGGAGACTGAAGTAGTTCTTATTAAGGATCAGGAAATAATTTCATCGGCGGAAGAAGATGTACTAGCTATTAGAGAGTTGTCACTTAAGGATCTAACGGAATGCAAAATATTACTAGAAGATATTACCGTGCGTTATCCAAAACTCAAGAAAGAGCCCAGTGTAAGAGTAGCCCGTAATGTACGTACTtatccaaaaataattaatttaaaaaaagagctGGGGAAACGCTTGAAACAAACTGATAAACCGAAGCGAAAGTACCGAAAAAGATGTGAGGAAAAAGACATTTCACTAAATGGACCAAAACGTGTTGCGAAAATGTCGCAACAAGAGCTGAAAGAGCGTTTAAGAATGTTAAAGAAGGAAGAAAAATCATGGAAATGCCCATTCTGTATTAAGATATATCATATGAGAAAGCCTTACGAGAAGCATTTACGGCACGATCACACTATGgatgaaaacaaaatcaaagataTTTTCAAGGATGAAAGCGTGTCCCAGAAACTGGAAGGCGAAGTATTTAAATGTAGCGTGTGCGATAAGATTTACTTGATGGAAAAACGACTGATAGCTCACATCAAGCTCCATGGCGCAGATGGAAGCCTAATCTTCAAGTGCCCGTGCTACTGTAATATCTTTTTTGCCAGTAAAGAAGAAGCTACGGCACATGCGCATAAAGAACATCGTGATTTGCTCTACTGTGAAATCTGTGACAAGTACTTGACTGGTCACGATAGTCTTAAGAACCATATAAAAAATCACCATGCGAAAAGAGAACCACGAAATCTTCCACGTAACTTAGTCTGCGACAAGTGTGGGAAGAAGTTTAGTGGACGGACTTCACTCACTGACCATGTTCGTTCCGACTGCGGTCGAGTACCACTTTATCCGTGCACTGTTTGTGGAAAGCATCTTACCACGGCGGGCATATTAAAGACTCACTTGCTCTTGCACAAAGATGAGACTCCTTATCAATGCGACAAATGCGGAAAAACCTTTAAAGTCAAAGCGCAATACAAATCGCACATAAAAATACGCCATACGGATTCCAAGCCATTTAAGTGCCATTTGTGCCCAAAGGAATATCCCTATCGAGAAAGTCTGCTTACCCATATGACGGTTCACACAGGCATTAAGAGGTTTTTATGCAACGGCTGTGGCAAACGATTCACATGTATCTCGAACTTGCAGGCTCATCGCAAAGTACACAGTGATACCTGTGGGCAATTGCCATTAAATGCAAGGGCAACGCAGTACATGGGTGTGCAAAAAGGCAACTTACTTTTGGGCGCCAAACCCGAAGCAGGATTAGAATATCAAGAGACCAATACACTCATAGCAAAAGATGTACTAGATCGGGATGTGCCAATGGCTCAAGAGTTAAACTTCCCCTCTGAACCCTCTGCTCCACTTGCAACAGTACCGCTTAACTATGTGGGCCAACAACCAACAGCCCCTTTggaactaaaaaatataattattccTAATATGATTGTTGATTTACACTCATCCGTAGCATACAATTAG
- Protein Sequence
- MLCELPIYALSLLISLLVSLTNAQTKLVGAHKVTATLITTQNYPVEEHIVHTPDGYILTIYRIPNSSKQPQFNTTTKKPVVFLQHGILGASDDWIINEPKTSLAYMFADAGFDVWLGNARGNTYSRQHKHIHPDSSDFWKFSWHEIGVYDLAAMLDYALAETKSSSLHFVAHSQGTTAFFVLMSSLPWYNDKVRSAHLLAPIAFMRNHAFLLSKLGGVFLGSPSFLSWIVAGMELLPITSAQKFFCEYVCSVESRINFLCSGLLEFIGGWGSRHLNHTLLTHVCETHPAGSSTTQILHYLQLYKSGDFRQYDHGIDLNIKLYNQATPPSYNIRSIVSCVHMYYSENDYMSSVEDVELLANSEGVAGATSTLSASATKNSKGEQSRTTVQITTVEISTDGVPKLHCPVCDKALISLNGYVKHVKKHEPPGGFLCRYCEGRFCSEEELKKHLDKVHTTIACRICKNNTTFTNENDYREHIRIVHNGVDREMLTCDKCGAEYKTLEPFKRHMDTQCGTVKPFKCDQCLMSFVTKYNLKQHKETHNGERKFCCSYCGKNFLQKGRLVEHERSHTGEKPYKCDVCGKAFAHRESIVTHSSIHTGIRLVECRCCHSRFSCYSNLIKHRRTRPDTCGLPEFDPPKNRVRTHRSRIPPTLNPTSEIKVSNFNKIIKPSDLEKEKEFRKVVKQKNNDEPARKPRKRRSEGQSKKGRQAKKYKEACGPSEDSDCVEESYCSEAHSESEDGSIVKRQTRQSNANHTLKDEVASENLSDFDNNCSDLHADSASGDKDICKLTSPVKQETEESRIESFEYTDSSQFVEPCCDLKEEEGNIFNEKDKLIDVLLKENNESDEHNDGIDSTPLKKSLQAVKLENDIKNILEETEVVLIKDQEIISSAEEDVLAIRELSLKDLTECKILLEDITVRYPKLKKEPSVRVARNVRTYPKIINLKKELGKRLKQTDKPKRKYRKRCEEKDISLNGPKRVAKMSQQELKERLRMLKKEEKSWKCPFCIKIYHMRKPYEKHLRHDHTMDENKIKDIFKDESVSQKLEGEVFKCSVCDKIYLMEKRLIAHIKLHGADGSLIFKCPCYCNIFFASKEEATAHAHKEHRDLLYCEICDKYLTGHDSLKNHIKNHHAKREPRNLPRNLVCDKCGKKFSGRTSLTDHVRSDCGRVPLYPCTVCGKHLTTAGILKTHLLLHKDETPYQCDKCGKTFKVKAQYKSHIKIRHTDSKPFKCHLCPKEYPYRESLLTHMTVHTGIKRFLCNGCGKRFTCISNLQAHRKVHSDTCGQLPLNARATQYMGVQKGNLLLGAKPEAGLEYQETNTLIAKDVLDRDVPMAQELNFPSEPSAPLATVPLNYVGQQPTAPLELKNIIIPNMIVDLHSSVAYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -