Cind009800.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cacoxenus indagator
Gene Symbol
-
Assembly
GCA_035041755.1
Location
JAWNKX010000242.1:6227565-6230273[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00019 0.016 15.9 3.0 1 23 201 223 201 223 0.99
2 15 1.6e-06 0.00014 22.3 3.9 1 23 230 252 230 252 0.98
3 15 0.072 6.1 7.7 1.8 2 23 289 310 288 310 0.95
4 15 0.00035 0.03 15.0 2.0 1 23 392 415 392 415 0.97
5 15 4 3.4e+02 2.3 3.2 1 21 422 442 422 443 0.93
6 15 0.56 47 4.9 4.0 1 23 452 474 452 474 0.96
7 15 9.7e-06 0.00082 19.9 0.8 2 23 484 506 484 506 0.97
8 15 5.8e-05 0.0049 17.5 4.3 3 23 515 535 513 535 0.97
9 15 0.29 24 5.8 4.4 2 21 562 581 562 582 0.93
10 15 0.062 5.2 7.9 4.2 1 23 629 652 629 652 0.98
11 15 0.44 37 5.3 0.7 1 23 689 712 689 712 0.91
12 15 8.3e-05 0.0071 17.0 2.5 2 23 735 757 734 757 0.95
13 15 8.1e-05 0.0069 17.0 0.7 1 23 771 793 771 793 0.98
14 15 8.4e-06 0.00071 20.1 0.6 1 23 799 821 799 821 0.99
15 15 5.4e-06 0.00046 20.7 2.4 1 23 827 849 827 849 0.97

Sequence Information

Coding Sequence
ATGAGTGCCGCATTATGTAGAACTTGCGATTTAGAATTAGCCGACATAGATAATCTTCACAAACTTTCCTCAAGAACTGAAAAATATCCTGAGAAAATGTTAGCTGACTTGCTTTTCTTGGTGACGGGCGTCGACACAAAAGATGAACATGCAAAATATATGCCGCAGAAAATTTGCGACACCTGCACTAACAAACTTCAAAGCTCTTACGGCTTTGTTATGCAGGCACGTGCGGCAAATAAGAGACACCTTGTGATGATcgaaaaaacgaataaaaaattaagcgaaACTGATTGCCTACAGGAGCTGCCGTTTGATATACGAACTGGACTTTTAATCAATGATCATAAAGGATCATTAATAGGGACGATGCACATGAAGGAAGAGCAGGGGCTGCCCTTTGATACACGAACTCGATTCTTAATTAATGATGATAAAGGAGATACTGTTGAGGAGTCAATCATCGATCCATTAATAGAAACAATGCACATAAAGGAAAAGACGTCTGATAGCGGGGATTCGGATGAGGAGCCATTGGAAATAGAGCCGAAAATATCCAAAGTAATTCATCAACGGCAAGATAAGAATAAGGATAAACTTTTCAAGTGTGACAAATGTGGTCAATCCTTCCATTGGCCACAGAGTCTCAGGATGCATATGCGCAAGCACTCAAACAAAGACGACTGGTTTACCTGTCCACACTGTCCGCGTAAGTTCTATCGCAAAGACTCACTACGCTCACACCTCAGCACACACGGTGATCCTCAAAAACGACTGTACACTTTGGACACAGAAAAAAGTCGCAACCGGAAAGCAAAATCCGTCgatttaaatttgtgtaaaCCCCACGGCtgcaaatcaataaaatgcaTGATTTGCCAGTATTCCTTCTTGAAAACGCACGATCTTCGAAAGCATTTAATCGATCACCCGCCAATTGACTTTCAACATTGTAAATCACTTGTGGAAACACTCTATGTGGACATGATCGACTGCACTGAGCAACAATTGATTGAACGCATACGAAAGGATTTGCAAGACGGCAAATATTCACTTTTCTACTCGATAACAAATCAGATGGGTTATGAATTAAGCATTGACAGTTCGGAGACAGAAAGTGAATCCGAAATTGTTGCGACCACTTTAGATTCATTGGACAATCATCGTACCCCTTATATATGTCAACTATGCGAACAGAGTTATTCACGAAAATATCAAATGTTCGAGCATCAGCGGCAAAGTCATGCTTGGCTTGAAGCTCCTTATGTCTGTACGCGCTGTGAGGGCCATTTTGTCTGCAAGGAACTATTGGAACATCATCAGAAATCATTATGCAGAAATCCacaaaaacgttttatttGCTATAAATGCCCTTTGAGATTCCATTGGCGCCACAACTTGAAGTTGCACTTGATGGACCACATGCAATCTTCGCAGTGCGAATCTGCTGAATGCACCGAGTGCGAACGTAGTTTTCAAGACAAAAGGTCCTTATCAATTCACATGCGCACAGTGCATACCGATAATTCAAACCTAATTTTCTGTCAATGGTGCGACCGAAAGTTCTACCGACGCGATTGTCTCCTTAAACACATGAGGCGTCATGGCATCAAGGAGAACGACGTACCAATGGCTGAAACGTTAATGTTAGCTGCTACGACAGCGAACGGTAATAAGAAGGCAGAATGTAAAGTGTGTAACAAACACTTTAAATGCATTGCCGATCTacgcaaacacatacataaacaGAAATCGGGTTCAATGGTACATCACAGACCCACCTCAAGCGTTGATTACTCAATTACCAATTCAGCAGGCTTTGAGTTGCAAATTGACGACTCTGAAACCGATGATGATTTGACTGCATACGATTGCGATAAGTTATATACCTGCGATCTCTGTCACATGCAGCTGCGTCGTAAATGTGAGATTATGCAGCATCAGCGCATTCTGCATCGATATAACAAGCTGCCACATGCGTGTGAGAAATGCGTTTTCCAGAGTGTTTCCATTGATGTTCTAGATCATCACAAACGAACGCAATGTTATAACACTGAAAAGAAATTTGAATGTGATAAATGCCGCTATAAATTTATGTGGTTAGAAAATCTTGCGTTGCACAAACAATTGCAGCATCTCGAGCCAGAGAACCACACAAAAAAGCCgcaaaacgaaataaagcCCAAGCAAATGGATTTGCTTGAGTGCCCGCACTGTGATAAAAAGTACTACGTCAAAGGTTGTCTGAACAAACATATAAGAGATGTGCACATCGATGGCGATCGCAAAAAGAAGTCGGCggaaaagaaatttatttgttcactTTGTGGCTTCCAAACAAAGGATGCCTCTAAGTTGACAACTCATCAACGCGTGCACACTGGAGAGAAGCCCTTCAAATGCGACATCTGTGATATGGCGTTCTCTAGGAATTACCAAATCGTTACACATCGGCGTATACACACAGGAGAGAAGCCGTTCCATTGTACTCTGTGCAACAAAGACTTTGCACGACCCGAAAACTTAAAACGACACAATCggattcatataaaaaatactgaACGTGAGAAACAATGA
Protein Sequence
MSAALCRTCDLELADIDNLHKLSSRTEKYPEKMLADLLFLVTGVDTKDEHAKYMPQKICDTCTNKLQSSYGFVMQARAANKRHLVMIEKTNKKLSETDCLQELPFDIRTGLLINDHKGSLIGTMHMKEEQGLPFDTRTRFLINDDKGDTVEESIIDPLIETMHIKEKTSDSGDSDEEPLEIEPKISKVIHQRQDKNKDKLFKCDKCGQSFHWPQSLRMHMRKHSNKDDWFTCPHCPRKFYRKDSLRSHLSTHGDPQKRLYTLDTEKSRNRKAKSVDLNLCKPHGCKSIKCMICQYSFLKTHDLRKHLIDHPPIDFQHCKSLVETLYVDMIDCTEQQLIERIRKDLQDGKYSLFYSITNQMGYELSIDSSETESESEIVATTLDSLDNHRTPYICQLCEQSYSRKYQMFEHQRQSHAWLEAPYVCTRCEGHFVCKELLEHHQKSLCRNPQKRFICYKCPLRFHWRHNLKLHLMDHMQSSQCESAECTECERSFQDKRSLSIHMRTVHTDNSNLIFCQWCDRKFYRRDCLLKHMRRHGIKENDVPMAETLMLAATTANGNKKAECKVCNKHFKCIADLRKHIHKQKSGSMVHHRPTSSVDYSITNSAGFELQIDDSETDDDLTAYDCDKLYTCDLCHMQLRRKCEIMQHQRILHRYNKLPHACEKCVFQSVSIDVLDHHKRTQCYNTEKKFECDKCRYKFMWLENLALHKQLQHLEPENHTKKPQNEIKPKQMDLLECPHCDKKYYVKGCLNKHIRDVHIDGDRKKKSAEKKFICSLCGFQTKDASKLTTHQRVHTGEKPFKCDICDMAFSRNYQIVTHRRIHTGEKPFHCTLCNKDFARPENLKRHNRIHIKNTEREKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-