Cind009798.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cacoxenus indagator
Gene Symbol
-
Assembly
GCA_035041755.1
Location
JAWNKX010000242.1:6211516-6214444[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 7 6e+02 1.5 0.7 5 16 217 228 216 230 0.85
2 16 0.02 1.7 9.5 0.3 2 23 272 293 271 293 0.96
3 16 0.0036 0.31 11.8 2.0 1 23 379 402 379 402 0.97
4 16 0.11 9.6 7.1 0.5 1 21 409 429 409 430 0.93
5 16 0.0012 0.1 13.3 3.3 1 23 439 461 439 461 0.98
6 16 0.00011 0.009 16.6 0.4 2 23 469 491 468 491 0.96
7 16 0.00017 0.014 16.0 3.4 2 23 499 520 498 520 0.97
8 16 0.0028 0.24 12.2 0.2 3 21 548 566 546 567 0.93
9 16 0.072 6.1 7.7 4.3 1 23 614 637 614 637 0.98
10 16 0.014 1.2 10.0 0.2 2 23 675 697 674 697 0.94
11 16 6.3e-05 0.0053 17.4 0.6 2 23 725 747 724 747 0.95
12 16 0.23 19 6.2 5.0 1 23 760 782 760 782 0.95
13 16 2.4e-05 0.002 18.7 1.3 1 23 788 810 788 810 0.99
14 16 1.2e-07 1e-05 25.9 2.5 1 23 816 838 816 838 0.98
15 16 5.6e-05 0.0047 17.5 5.3 1 23 844 866 844 866 0.98
16 16 0.0016 0.14 12.9 0.5 1 22 872 893 872 896 0.90

Sequence Information

Coding Sequence
ATGGCTTCAACTGACGCCTGTAGGACGTGTTTGGTAAAAACTACAAAGAAACACTTACATTTGGAGTCATTATCAAAATACCCTGGAAAGCTATTATTCGATTTGGTGGTGGAGCTAACGAAAATTGATATGAATATGGAGCATACCAATAACATGCCTAAGCAATTGTGCTCCAGTTGTTTTCGTAAACTTCAAAATGCCTACGACTTTGTTTTGCAAGCCCGTGAGGCAAATGATAAGTTAATGACATCCTTCAAAGAGTTGGAATCGGAGTCGGATATGAGAGTAAAACTCACCGGAGAGAGGGAATGTTTACAGGAAAACCCAATGGAAATCTGTACGGAACAGTTTGTGGAAGTTAAGCTAGAGGAAGGTATCGCAGACGAATTGTCTAAGGATTTTTCAGAAAGGATATTAGAAGATAATTTAAAGAAGGAGGAAACTAGTGGAGATAATGTTGAACTGGGCAAGGTAATAGAAGGTTCATTAGATCCTTTGATGCAGAAGTCCACCAGTAAAATTCCAAATGCAAAAGAATGTGTTAGTGCTGACGAAGAAACTTCTAGCTACGATGAGCTTGATGAATTACCACTTCAAGAACGAAGTATTAAATCAAAACTGGGAAAACGTCCCAACAAAACGATTCAACATTGCAAACGCAAATTCTgtcaaaaagacaaaatggAGTCCCTATTGAAAAAGCGCGTCGTCGAGCAgccaaactttttaaaatacacCAGAACTCTTCCTGAACTTAAACAAGCCAAGGCAGTCGacataaatatttgcaagCCAAATGGTTACAAGTTAATTCAGTGCATGATTTGTTTGCAAAGATATACCAGGATAGCTGAGCTACGATATCACCTGAAAGAACATCCTAATGTGTCCTTTGCAAATCGCTCCCAGGAGACATTGCAGGAGATTGCCAATTCCTTTTATGTTAACTGCAAATTTTCAACAGAAGCCGAATTGGTCGCCTATATACAAAGAGATTTGAACGCTGGAAAGTACAACAATTTCTACTCTATTACGAACCAATCTGGCTATGAGTTGAGTCTGTCAAACTCAGACACTGAAAGCGATTTGGATTATGAGACGGAGGAACATGAAATGGCTACACCAAGAAGGCAATATACTTGTGATTTGTGTAAAGCACAGTTTGGACGTAAATATCGACTCTTCGATCATCAAAGGCAAAGCCACGAATGGCAGGATGCAAATCATGTGTGCGGACGATGTAATGCGAGATTCGTGAGTGGAGAATTACTCCAACAACATCACCAGTCGCAGTGCATGAATTCCCAAAAGCGCTTCAGGTGCCGAAAATGTCCGCTTAGGTTCCGTTGGAAGGATAACTTGAAGACACACTACCGACAGCACAGAGAAAAAGGTCCGTCACTGAAATGTGTAGAGTGCAACCGGATTTACGATGATAAGAAATCGTTTACGATCCACATGCGTATAGTTCACGCAGATTTGCCTAACTTAATGCCCTGCCATTGGTGCAATCGAACATTTTACCGCCGCGACTACATGCTGAAGCATTTGAAACGCCACGgaataaaagagaaagatCTGCCTCTCGCTGAGATGTACATTAGCGCCACCTCGAAGGCCAATGGTGCGAAGTTTGTTCACTGCAAGGTCTGCAATTTGCAGTTCGACCGCATTTCGGAGTTAAAGGAGCACATGATAAGCGACCTGAAGCTGAACATAATCAAATATGAAAACATAAATTCTGTGAGCAACTATTCTATTACCAATGAAGCAGGCTTCGAGATGCACATCGATGATTCGGACACTGAAAATGAGGACCACACAAATGGGCGGGCCCCTTTCACATGTGCGCTCTGCCAAGTGCagtgcaaaagaaaatttgaaatgtttcAGCACCAGCGTTCGATGCATCGCTTCGAGCAGATGCCGTACTCGTGTCAGAAGTGCATATTCAAAAGTGTATCAAAGGATATACTCGAGCACCATGAGCGAACGCAGTGTTTGAGCACAGAGAAAACGTTGTCGTGTGAGAAGTGCGGATTGAAGTACATGTGGCCCGAAAATCTTACGCGTCATTTGAATCTACAgcatttcaatgaaatatCTCTCCAAAATATCGATGACAACACGGAGAAGCTAAAACATAAGACGGAACCACCTCTGCCTACACTGGAATGCCCACATTGTGACCGCACCTACGTACTACAGTCACGCCTCAATAATCACATTCGCGACGTTCATGTTGCAAGCGTGCCGAAGAAAACAGAAACTCAAAGATTTCTGTGCTCGTTGTGTGGCTTTAAGACACATTCACCTTTCTGCtttattattcatatgcgCCGACACACCGGCGAAAAACCCTTCAAGTGCGACTTGTGCGAAATGGCGTTTCGTAGGAATTCGGAAATGGTCCAACATCGTCGGAAACACACAGGCGAAAAACCGTACCATTGTACCATTTGTGGTAAGGACTTTGCTCGTTCTGACAAACTAAAACGTCACATGTTGACACACAGCGGAGTAAGACCATACAAATGTACCTTTTGCGATAAGTGTTACCGTCAATCGAAGGATCTGAAGCTGCATCTCTTGCAACACACCGGGGAGTATCCGTTCGTGTGCAACGTATGCGGCGAAAGATTCCTACAAAATGCGACGCTTGAAAAGCATCGCAGTATGAAACGTCATTTTGAAggaaataatatataa
Protein Sequence
MASTDACRTCLVKTTKKHLHLESLSKYPGKLLFDLVVELTKIDMNMEHTNNMPKQLCSSCFRKLQNAYDFVLQAREANDKLMTSFKELESESDMRVKLTGERECLQENPMEICTEQFVEVKLEEGIADELSKDFSERILEDNLKKEETSGDNVELGKVIEGSLDPLMQKSTSKIPNAKECVSADEETSSYDELDELPLQERSIKSKLGKRPNKTIQHCKRKFCQKDKMESLLKKRVVEQPNFLKYTRTLPELKQAKAVDINICKPNGYKLIQCMICLQRYTRIAELRYHLKEHPNVSFANRSQETLQEIANSFYVNCKFSTEAELVAYIQRDLNAGKYNNFYSITNQSGYELSLSNSDTESDLDYETEEHEMATPRRQYTCDLCKAQFGRKYRLFDHQRQSHEWQDANHVCGRCNARFVSGELLQQHHQSQCMNSQKRFRCRKCPLRFRWKDNLKTHYRQHREKGPSLKCVECNRIYDDKKSFTIHMRIVHADLPNLMPCHWCNRTFYRRDYMLKHLKRHGIKEKDLPLAEMYISATSKANGAKFVHCKVCNLQFDRISELKEHMISDLKLNIIKYENINSVSNYSITNEAGFEMHIDDSDTENEDHTNGRAPFTCALCQVQCKRKFEMFQHQRSMHRFEQMPYSCQKCIFKSVSKDILEHHERTQCLSTEKTLSCEKCGLKYMWPENLTRHLNLQHFNEISLQNIDDNTEKLKHKTEPPLPTLECPHCDRTYVLQSRLNNHIRDVHVASVPKKTETQRFLCSLCGFKTHSPFCFIIHMRRHTGEKPFKCDLCEMAFRRNSEMVQHRRKHTGEKPYHCTICGKDFARSDKLKRHMLTHSGVRPYKCTFCDKCYRQSKDLKLHLLQHTGEYPFVCNVCGERFLQNATLEKHRSMKRHFEGNNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00251510;
90% Identity
iTF_00251510;
80% Identity
-