Cind015894.1
Basic Information
- Insect
- Cacoxenus indagator
- Gene Symbol
- zfh1
- Assembly
- GCA_035041755.1
- Location
- JAWNKX010000682.1:4216839-4221260[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.7e-05 0.004 17.8 1.5 1 23 178 200 178 200 0.97 2 15 0.00018 0.015 16.0 0.3 3 23 208 228 207 228 0.98 3 15 1.6e-05 0.0014 19.2 0.2 1 23 378 400 378 400 0.98 4 15 0.051 4.3 8.2 1.2 2 23 407 428 406 428 0.97 5 15 3.6e-06 0.00031 21.3 2.8 1 23 458 480 458 480 0.98 6 15 0.013 1.1 10.1 0.4 1 23 502 524 502 524 0.94 7 15 1.2 1e+02 3.9 1.9 1 23 530 553 530 553 0.97 8 15 0.27 23 5.9 0.3 5 19 564 578 561 579 0.91 9 15 0.00016 0.013 16.1 5.6 1 23 588 610 588 610 0.97 10 15 0.034 2.8 8.8 0.3 2 23 616 637 615 637 0.96 11 15 9.3e-06 0.00078 20.0 0.3 1 23 646 668 646 668 0.98 12 15 0.001 0.089 13.5 0.1 3 23 676 696 674 696 0.97 13 15 5.6e-05 0.0047 17.5 0.5 1 23 702 724 702 725 0.95 14 15 0.35 30 5.6 0.6 1 23 735 757 735 757 0.96 15 15 0.00056 0.048 14.4 0.4 1 23 1301 1323 1301 1323 0.97
Sequence Information
- Coding Sequence
- ATGAACAACCAAAGTTATGGTGGCAGCGTACAGTGGATCCACACCACTAGCGATATTAAAAACTCTGCGCAGTTGATCTCGGATCCGCATCAACTGGAAGTGACGGAGATTCTTGATGACAGCGGCGGAGATGATAGTCACGGCCAGTACTTGGGTGAGAGTACCGGCACAGATCTCGCCCACATCGCTGCTGAGAACCTAATCTTTATGGCTCGCGATGGTCACATTGTGAATGAGATTATATCTGCAGACGATGCCGAAACTATAGTGATGACTGCCGGAGATAGCACTGATATGCAACTGCAGCAGTCGTCAGAATTGGTAGAATCAAACTTAATCGATGGCGGTTCATATGGTGAGGTGTATGATGAAGACACTCCGCAGATGGTCACTGAGGAGGTCATAACAGACGATTGGGTGCAACATCAAGGCGAAGAGCGAGTGGAAATACCTGCGGATCAAATAATTGGCAGTAACAGTTCTCAAGTTCTGCTGGACATGGTACAGGATGAGTACACAGCACTGCGTCCGTACCCTTGTGATTTTTGCAGTCGACGGTTTCGTAAGAAAACAAGTCTAAACAATCACATGATCGCGCATCAAAACGATCGACCATTGCTCTGTAAGCTTTGTGGTGCACGTTTTTCACGTAGGGTGGAACTCATAAATCATTTGAAAGCGCATGCCGAACAGCAATGCGTCGATGAAGCTATCCGGGCGAATGCTGTGAAGTTTGAGCCAAGACGAAACAATTTGGACGATCACTACAACGAACAAGAGTGGCAATTCCAAGCAGCATCAACCTCAAACCAAAACCCACAACTTGGTGAGGAATTATTAATGAATGACATGACGCCGGCTGAAAGCCCATGCGCAAACAATTCATCTGTATCTTCTTTGGCCGTTTCGTCATCGGCGGCGTCTTTAAATCAAACGACACGTGGTCGCATAAGCCGATTGAAGCCCAAAGAAGACACGCACTATGTTCTTGTAGAGGAAAAAGTAACTACACCTGATGTTGAGCTTATGGAATGCAAGGACCTACAAGCCGCATCAGCTGCCGTCAAACTGTCTCAGGACCAGAGTCCCGCATATCGTCAGAATTACCCGGTTATCAATGACAACAAACCATTTGTGTGTCAAGAGTGCGGTTTGGCGTTCGGGCGACAAAAAGCTCTTCTTTCGCATATGAAGAACCATCGCGGAAATTCTCCCATTGAATGCAGTCATTGCAACGAGTTATTCTGGGATACGAACAGCTTAAATGAACATCAGAAGACGCATCAGTTTGAGGAGAGTAACTCTGAGTTTGAGCCAGCTGATGGTGATGAATCGCACAGCGAGTCAGAGCCCGATCAACTCTATGGCGAATTTTATTGCAGTGAGTGTGGCATATCCTTTCATAGACAGGACCTTTTACGTCGGCACTTAAAGTCCCATATGAAAAGGTCCACATCAGCAGCAGGTTCAACCGCTCCAACAGCTGACGCGAAAACTGGACCACATTGCTGCAATACGTGCGGCGAAACCTTTGAGGAGGCATTGGACTTGTTGGCTCATGCAGAAATTCACGCACGATTTCCATCTTTTAAATGTGTTCTATGTGGTGATTCTTTTTACGAGGAATTAACGATTAAACGACATTTACATACGCGACATTCACACGAGATGACGCCAAATTCATGTATTCTGTGCGGTAAAGAATGTCGTGACCGGAAAGCTTTAATTAAACACGCTTGGGATCACTCGCGTGAAAAATGTCATTCGTGCTCAAAGTGTGggaaaaattttcataataagGCGCGCCTGAAACGTCATATGGCCTCTCACCGAGACAAGTCTGTAGTTTGTGATGTGTGCCAAGAGGAGTTTCCAGATGGTCGTTCGCTGTCCAATCACAGGCACTCGCACAGTGCAAATTCGTCGGGCAAACTTTTCCCGTGCAATGAATGCGGTAAAACGTTTGGTTCGCGCAGTTCTCAACAGATTCACGTGCGCATACACACTGGCGAGCGTCCGTACGGGTGTAGATACTGTTGGAAAGCTTTCGCCGATGGAGGTACGTTGCGCAAGCATGAGCGCATTCACACCGGCGAGAAGCCTTATGCTTGTTCTGTGTGCCCACGTGCGTTTAATCAGCGCGTTGTGCTACGCGAACACATCCGTTCGCACCACTCGGGCAAGGATGCCTCTCGTGGCACTTATTTTTGTACGGTTTGCTCTGCGGAAATGTCAACTTCAAATGAACTTATACAACATTTGATACATCATAGTGACTTGAACACTGCCAAGCAACGGCAACCTGTCACTGGCCCAAGGAAGTATAAACGTCGACGAAAACTGCAGCCCCACGAAATGGCTAatttacaatcaaaaaaaGTGGAGAATTTAGACTCTGATCTAGGAATGTCGGATTTTGACATGGAAAACGTTGGTGACTTATTGGACATTTCGGTGtccgaaaataaaacaacaagctCAAAAACAAATCGTAAAAATAAGAGAATGGATAATAGCACTCCAAAGAGTGCTGTCAACAATGGAAAATCAGTCGCTAACGCTAAATCAATTAGTGACAAGACCACGCCTGCAGAAGAGAGGGACAGAAGATCCTATTCTGTTgaggacaacaacaatgcttCTGGCAAGCAACGCCACGATTCCTTGAGCAGCAATTCGGATAAATTGTGGGAGGCGAAATTCATGCAAAATGTCAATAATAGTGAAGATCACTATAAAGGTCTATTCAGTAATGTCGGCCAGTGTCTTCAGACAATTGACTCATTGGTTGTAAGTACTAATGGTGCGTCATCAACCAGCTCCAAGCGTCGTGCCAATGAAAGTGGATTTGGTGCACAGCGCACTGAAGAAGTGCAGCGTAAATCTGAAACTGCTAAGAGGTCAAAGACGAGTAGTAGATTGCGGAAAAGATCATTGAGAAATCACACCAAACACAACGTAAGACCGCGTATGATTCATACGGAGAAATCTCGTCAGGGTTATGTTAAAGAGAGTAAGCGCACGCGAGTGAAGAGCTACATCACACGTACTGAAACAAGCAATCTCGGTTTGATGCCGTCCAGCTCTAATTCAACAACGACAATTGTGGACGACTACGAGATCATTTCGCCCGCCACTCAACCGCCAAATCAGATCAGCTCGAGCCCACTGCACATCAAACAGGAAAGCGAAcaccatcagcatcatcagAATCAGCTGCATATGTATGACGCACACTTGTTGCTCGAAGCGTCGAGTTTACGAAAGGAGGCCTTCGAAAAATTTAATCCAAGCATCGTCAACGATCTCGAGGAGATTTTGCGTTCGCCACTGAAATCAGATCGCAATGCCAGGCAACGCTTCACAAGCGAATCGTCGACAACGCCACAATTTTTGCCCGAAGATGAACAAAATTTGATCAAAATCGAACCGACTTCACCGGATTTGCGCGAAATCGTCGAGAGTCAACGGAATGTGTCCATGTCCCAACCGGGCACCTCAGCTCGCACAACACAAATCCGACAGAACACTGTTACTAACAATTACCTCTTCGGCAATGAGAGAACTATGGAAGCAACAAAACGCAGCGGCGGACGGTTGACGTCGACAAAGAAGCGGAACGGCAACGTGAATCTGCGTCACAATCAAAGCTCCTCTACAAACGCAACGAAAGTTGTGGAATCTGCTGTCGTCAGTTCTTCAGCATCGTCAGCGTATCTAAACTATGGCGTGGACGCTTATAACGTGTCTGTACCTGCTGGCAGCAGTAATGGTGATGTGGgctcaacatttttttcaatatctgAGGTTGTGTCCGCAGCTGATGCCGCTGATGCTGCGGCAGCTGCATCTTCTGCTGAGGCAGCTGCGGCCGCCAAACCGGAGCGCAAAGTGCGTCAATTCGAGTGTGAAATGTGCTCGGCGGTGTTTAGCGATCGTACTCAGCTGCTCGAACATGTACATAttcacatttaa
- Protein Sequence
- MNNQSYGGSVQWIHTTSDIKNSAQLISDPHQLEVTEILDDSGGDDSHGQYLGESTGTDLAHIAAENLIFMARDGHIVNEIISADDAETIVMTAGDSTDMQLQQSSELVESNLIDGGSYGEVYDEDTPQMVTEEVITDDWVQHQGEERVEIPADQIIGSNSSQVLLDMVQDEYTALRPYPCDFCSRRFRKKTSLNNHMIAHQNDRPLLCKLCGARFSRRVELINHLKAHAEQQCVDEAIRANAVKFEPRRNNLDDHYNEQEWQFQAASTSNQNPQLGEELLMNDMTPAESPCANNSSVSSLAVSSSAASLNQTTRGRISRLKPKEDTHYVLVEEKVTTPDVELMECKDLQAASAAVKLSQDQSPAYRQNYPVINDNKPFVCQECGLAFGRQKALLSHMKNHRGNSPIECSHCNELFWDTNSLNEHQKTHQFEESNSEFEPADGDESHSESEPDQLYGEFYCSECGISFHRQDLLRRHLKSHMKRSTSAAGSTAPTADAKTGPHCCNTCGETFEEALDLLAHAEIHARFPSFKCVLCGDSFYEELTIKRHLHTRHSHEMTPNSCILCGKECRDRKALIKHAWDHSREKCHSCSKCGKNFHNKARLKRHMASHRDKSVVCDVCQEEFPDGRSLSNHRHSHSANSSGKLFPCNECGKTFGSRSSQQIHVRIHTGERPYGCRYCWKAFADGGTLRKHERIHTGEKPYACSVCPRAFNQRVVLREHIRSHHSGKDASRGTYFCTVCSAEMSTSNELIQHLIHHSDLNTAKQRQPVTGPRKYKRRRKLQPHEMANLQSKKVENLDSDLGMSDFDMENVGDLLDISVSENKTTSSKTNRKNKRMDNSTPKSAVNNGKSVANAKSISDKTTPAEERDRRSYSVEDNNNASGKQRHDSLSSNSDKLWEAKFMQNVNNSEDHYKGLFSNVGQCLQTIDSLVVSTNGASSTSSKRRANESGFGAQRTEEVQRKSETAKRSKTSSRLRKRSLRNHTKHNVRPRMIHTEKSRQGYVKESKRTRVKSYITRTETSNLGLMPSSSNSTTTIVDDYEIISPATQPPNQISSSPLHIKQESEHHQHHQNQLHMYDAHLLLEASSLRKEAFEKFNPSIVNDLEEILRSPLKSDRNARQRFTSESSTTPQFLPEDEQNLIKIEPTSPDLREIVESQRNVSMSQPGTSARTTQIRQNTVTNNYLFGNERTMEATKRSGGRLTSTKKRNGNVNLRHNQSSSTNATKVVESAVVSSSASSAYLNYGVDAYNVSVPAGSSNGDVGSTFFSISEVVSAADAADAAAAASSAEAAAAAKPERKVRQFECEMCSAVFSDRTQLLEHVHIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -