Cind009803.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cacoxenus indagator
Gene Symbol
-
Assembly
GCA_035041755.1
Location
JAWNKX010000242.1:6253444-6256838[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 8.8e-05 0.0074 16.9 2.0 1 23 207 229 207 229 0.99
2 17 0.0096 0.81 10.5 0.4 2 23 264 285 263 285 0.95
3 17 0.00017 0.015 16.0 0.9 1 23 371 394 371 394 0.96
4 17 0.01 0.86 10.4 1.0 1 22 401 422 401 422 0.94
5 17 0.018 1.5 9.7 3.5 1 23 431 453 431 453 0.96
6 17 4.5e-05 0.0038 17.8 0.4 3 23 462 483 460 483 0.96
7 17 5.4e-05 0.0045 17.6 4.2 2 23 491 512 490 512 0.97
8 17 0.017 1.4 9.8 0.1 2 21 539 558 538 559 0.93
9 17 0.05 4.3 8.2 4.4 1 23 611 634 611 634 0.97
10 17 0.68 57 4.7 0.7 1 22 641 662 641 662 0.96
11 17 0.067 5.7 7.8 1.2 2 23 672 694 671 694 0.93
12 17 0.00022 0.019 15.6 0.3 2 23 727 749 726 749 0.95
13 17 0.00038 0.032 14.9 0.2 1 23 763 785 763 785 0.95
14 17 5.5e-06 0.00047 20.7 2.1 1 23 791 813 791 813 0.99
15 17 2.1e-08 1.7e-06 28.3 0.9 1 23 819 841 819 841 0.99
16 17 2.2e-05 0.0019 18.8 1.8 1 23 847 869 847 869 0.97
17 17 0.00019 0.016 15.9 0.5 1 23 875 899 875 899 0.91

Sequence Information

Coding Sequence
ATGGCcacaaaaaagataaatcTGAGATCGATCAACAATACCTGCAGAACTTGTTGCGCCCACGTCAACAATGTGAATAATTTAAGTGAGTTAACAACACGCCTCAAACGGTTTCCAGACAAAACGCTTTGGGATTTGCTCAACGAACTTGCTCGTATTGACGGCAGCTTGAAATATTTGGCACAGTTGCCACAGCGTATCTGTAAAGCTTGCAATCGCAAATTGAAGAATGCCTATTACTTCGTTGTTCAGGCGCGTGAGGCCAACGAAAATCTGTTGGCTGCACTAAAGGGCGTCGGACTCAATCATGAGACAGTGCCACATTCTTCATCAGTCCAAAGAGATTGCCTACAGGAATCACCGATACAGACAAACGACGTCATCGACgtaaaaatcgaaattgaaaCGGACGCTgttcaatttgaaaataacaatGTGGAAACAATTTCCCAAAACGCAGGAGATCCATTAAATGAAGATTCCAAATTCTGGCAAGAAACCGCTGTTACGAGTGATGATGATTGTGACGATTTACCTTTGGCACAACGAAAATCCCAAATACATTtggaaaatttcaaaacaCTTAACGAAATCAAATCACCTAAGTCGCATCACACATATCAATGCGATCAGTGCGAGAAATGTTATCTGCGTCCTAAGAATTTGGTGGCGCATTTGAAGACccataatgaaaaaataaagccaACACGCTCAACGAATCTCTGTGAACGACGGAAGTTGAAGGAAGTCGATATTAACTTGTGCAAACCCAATGGTTGTAAGCTAATACAGTGCATGATCTGTCTACGGAAATTCACAAAATACCCCGCGCTTCGGAATCATCTGAGCGAGCATCTCATAAGCATCGCCTTTGGCGAGCGTCATGAGTCTCTGCAAGAACTTGCAGAGTTATTTTATAATGATATCAAAGCTACCACAGAGGATCAACTGATGACACGTATACGTGCAGATCTAAACGCTGGTAGCTATGCACGTTTCTATTCAATAACAAACGAGTCTGGCTATGAACTTAGTTTAGAGAGTTCAGAGACGGATAGTGATTGCGAACTCTTGGCAGACCGAATGAAAGCTGATATAACACAAAGAAAATACGTATGTGAGCTGTGCAATGCTAGCTACAACCGGAAGTATCAACTTTTTGATCATCAGCTGCAAAGCCACAAGTGGCTAGATGCCCAACATGCGTGTCCACGATGTGAGGGTCGTTTCGTTAGCAAGAAACTCTTGATGCATCATCAGCAGACGCTTTGCAAGAATACACAAAAGCGTTTCGTATGCAACAAGTGTCCACAAAGGTTCCGCTGGAAACACAATTATCGAGCGCATAATAAAGAGCATAGAAATAAGAAACAAACATTAGCTTGCAGCAAGTGCGAACGCACATACGATGACAAAAAATCGTTGACAATACACATGCTCACCGTACATGCAGACGAATCGCAGTTGCTGCCATGCCATTGGTGCAATCGCAAATTCTATCGGCGTGACTACCTTTTCAAGCATTTAAAAAGACATGGCTTGCAGGAGAAGGATCTGCCTTTAGCAGAGTCATTACTGAGGGCGACGACAAAGTCGCATGGTGTGAAGTCCGTAACCTGCAAAGTTTGCAACGTTCAATTTGAGCGGATTGTCCAGCTTCGAACGCATTTATTGATGATGAAAGAATCGCACAAGACGCCACATCAGCCCTATTCGCCCTTTAACTACTCGATCACAAATTCATCAGGCTATGAGTTGCAAATTGATGATTCGGAAACTGATGACGACGCAGCAGCAGCTAAATTCAAAACTAATCCAAAGCGTAAGCTGTACACATGTGATCTCTGCCAAGTGCAATGCCATCGTAAGTTTGAGTTGATGCAACATCAACGTGCAATGCATCGCTTTGAGACTTTGCCCTACTCTTGTGAGAAATGCATCTTCAAAAGCGTTTCGAAGGATTTGTTAGATCATCATATACGCACACAATGCCTAAACACCGAAAAGAAACTGGAGTGCAGAATATGTAGCTATAAGTTTATGTGGTCCGACAATCTCCAACTGCATATGCATTTGCAacatgaagaagaagagggTCAAGAGAGTGCTGTGCTAACAAAAATTGGCGgtgaaaaaacaattgaagaaCAGACAACTATTCCTACACCAAAGGTGTTGCAGTGTCCACAATGTGATCGCACTTATATGCTGCAATCCTTTCTTAACAATCATATCAGAGATGTGCATGTCGAAGGTAACcgcaaaaagaaagaagctGAACGTAAATTCTTATGTTCGCTTTGTGGTCTTGAGGCACAAACATCCTCTAATCTCATTATACATATGCGACGGCACACTGGGGAGCGTCCGTTTAAATGCGATATTTGCAATATGGCTTTCATACGGCATTCCGAGCTGACAATTCACAAAAGGCGGCACACTGGCGAACGGCCATATGAGTGCACAGTGTGTGGCAAAAATTTTGCACGCTCCGACAAGCTGAAGCGGCATATGTTGACACATAGTGGCTTGAAGCCATACGTCTGTACATATTGCGAGAAGAGTTATCGATACTCAAAAGATCTGAAGCTTCATCTTTTACAACACACGGGCGAAACGCCATTCGAGTGTGGCACCTGTGGAGAAAGATTTATGCAGAATACTGCATTAGAAAAGCATCGCATGATGCGACGGCATTTCGATGGTACAAAGTGA
Protein Sequence
MATKKINLRSINNTCRTCCAHVNNVNNLSELTTRLKRFPDKTLWDLLNELARIDGSLKYLAQLPQRICKACNRKLKNAYYFVVQAREANENLLAALKGVGLNHETVPHSSSVQRDCLQESPIQTNDVIDVKIEIETDAVQFENNNVETISQNAGDPLNEDSKFWQETAVTSDDDCDDLPLAQRKSQIHLENFKTLNEIKSPKSHHTYQCDQCEKCYLRPKNLVAHLKTHNEKIKPTRSTNLCERRKLKEVDINLCKPNGCKLIQCMICLRKFTKYPALRNHLSEHLISIAFGERHESLQELAELFYNDIKATTEDQLMTRIRADLNAGSYARFYSITNESGYELSLESSETDSDCELLADRMKADITQRKYVCELCNASYNRKYQLFDHQLQSHKWLDAQHACPRCEGRFVSKKLLMHHQQTLCKNTQKRFVCNKCPQRFRWKHNYRAHNKEHRNKKQTLACSKCERTYDDKKSLTIHMLTVHADESQLLPCHWCNRKFYRRDYLFKHLKRHGLQEKDLPLAESLLRATTKSHGVKSVTCKVCNVQFERIVQLRTHLLMMKESHKTPHQPYSPFNYSITNSSGYELQIDDSETDDDAAAAKFKTNPKRKLYTCDLCQVQCHRKFELMQHQRAMHRFETLPYSCEKCIFKSVSKDLLDHHIRTQCLNTEKKLECRICSYKFMWSDNLQLHMHLQHEEEEGQESAVLTKIGGEKTIEEQTTIPTPKVLQCPQCDRTYMLQSFLNNHIRDVHVEGNRKKKEAERKFLCSLCGLEAQTSSNLIIHMRRHTGERPFKCDICNMAFIRHSELTIHKRRHTGERPYECTVCGKNFARSDKLKRHMLTHSGLKPYVCTYCEKSYRYSKDLKLHLLQHTGETPFECGTCGERFMQNTALEKHRMMRRHFDGTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-