Cind000971.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cacoxenus indagator
Gene Symbol
su(Hw)
Assembly
GCA_035041755.1
Location
JAWNKX010000067.1:3188407-3191107[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00044 0.037 14.7 1.2 1 20 146 165 146 167 0.94
2 12 4.6e-06 0.00039 20.9 0.4 3 23 218 239 216 239 0.93
3 12 0.0099 0.84 10.4 0.2 1 23 245 267 245 267 0.95
4 12 4.3e-07 3.6e-05 24.2 2.4 1 21 274 294 274 295 0.95
5 12 1.1e-06 9.3e-05 22.9 0.7 2 23 307 328 306 328 0.96
6 12 8.2e-05 0.007 17.0 5.3 1 23 339 361 339 361 0.99
7 12 6.4e-05 0.0054 17.3 0.9 1 23 367 389 367 389 0.97
8 12 5.5e-06 0.00046 20.7 0.7 1 23 395 417 395 417 0.99
9 12 1e-06 8.8e-05 23.0 2.0 1 23 423 445 423 445 0.98
10 12 0.0003 0.026 15.2 3.5 1 23 449 471 449 471 0.97
11 12 4.4e-05 0.0037 17.9 0.2 1 22 481 502 481 505 0.90
12 12 0.0092 0.78 10.6 0.1 3 23 523 544 522 544 0.95

Sequence Information

Coding Sequence
ATGAACCAACCGATCTCAGAATCTCCGGAAGAACCCGTATTCTCAGGCGATGAGTTCAAACGAAGTAAAACGACAGGTATCAAAATACTGAACGATGAGAAAATTTCTACCCCGTCGACTGTGAAAACTTTCACCGCAGTTCCAATGGAGCCTACGAAGCAGATTAGCGCTCTTTCAATTGCCAAGCCGAAGGTGTCGCctacaaaaaagaagcaagaCCATTATGTTATGCAAACTGTGAAGAGTGAATCAACGAAGTCCGATGGGGCCGTGACACTGGACGACGATACAATCGATTTTGTCCTTGCTGAGAATGATGAGGAACATGCGGATGAGGCGAAGCTTGGCCAACCCAGTGGTGAGATAACAGAGGAATTTCACTTAAGTGGCGAAGAGGGGGACGGTGAAAATGGTCAAGTGAAAGAAATTGTGGAGCACGTTTGTGGCAAGTGCTACAAAACATTTCGTCGAGTAAAAAGCTTAATAAGGCATTTGGAATTCTGTCGTTTTGACAGTGGGTACCATCTTCGTAAAGctgaaatgttgaaaaacctggataaaattgaaaaagatgCAATCATCATGGAGAAAAAAGatatttgcttttgctgcAGCGAAAGTTATGATACCTTCCATCTTGGCCACATTAACTGCCCAGATTGCCCGAAATCTTTTAAAACACAAATGAGCTATGAGCGTCATATCTTTATTACTCATTcggaattcaacgattttccTTGCTCAATTTGTAATGCTAAATTGCGAAGTGAGTCTCTCTTAAAATTGCACGAGGAGCAGCATAAAAATCGTGGAAAACCTTACGCATGCAAAATTTGCGGTAAAGATTTCACACGATCGTATCATTTGAAGCGccatcaaaaatattcttcttGTTCTGCAAACGAAAACGACACAATGAGTTGTAAGGTGTGTGATAAAGTATTCTATCGCTTGGACAACTTGCGTGCGCATTTAAAGCAACATCTCGGAACACAGGTTGCAAAAAAGCCGGAGTACATGTGTCACGTTTGCAAAAACTGTTTCTACAGTTTGTCTACATTAAACATACATATCAGAACCCATACGGGAGAAAAGCCGTTCGACTGCGATTTGTGTGATAAAAAATTCTCTGCATTAGTTGCATTAAAGAAACATAGGCGGTATCACACAGGCGAAAAACCATACACTTGCTCAGTGTGCAATCAATCATTTGCTGTAAAAGAAGTCCTTAACCGCCATATGAAAAGGCACACTGGAGAACGTCCTCATAAGTGCGAAGAATGTGACAAGAGCTTCATACAAGCGACTCAATTGCGAACACATGCAAAAACCCATTTGAGGCCATTCGATTGCTATATATGTGAACATAAATTTAAGACCCAAAAGCAGTTGGACAGGCACATAAAGGAACATACCCGGACAAAACGAACGAAAAGAGAATATGAGTGCACAATTTGTAAAAAGGGCTTCGATAACAAGGCAGAACTTAAAGAACATGTGGATAAAGGCGATCACAAGCCGGTTGCAAAACGAACTAAACGGAGTAAGATCAAAGATCGAAGGGATTGCGCCGTTTGCGACAAGATTTTTGACACGGCTGAAAGTTTACGCTTCCACATACTCAAAGTACATGAATGTGACCCAGACGATATTTTTGGTGAAAAGCCTCCAGCTAAGAAAGAACCAGTTTATGGAAAGTCGTCATCAAAACATTCTAAAATATTGCCAACAAAGAAATCTCCAGTTTCAGAAAAAACAGTTGGTACAAATAATGGTGTTGTTGTCCGTGAGTTTCTTGTTGATGAAATTCCAGCCGTGGGATCCACTTCCCATCAAACCATAATACTCGAAAATGAATCCTATACTGTAATTCCATTAGATGATTTAGATAAAGAAGATATACAACTTCCTGCTACTGAGATAAAACCGCAAGTTGTGAATACGGTAAAGAAAGAACAACGGAAATCACTTGCCGCAAGTTTAGCTGCCGCTATTGCTGACAATGAAGATGAACTTCTGAGCGATGATGACCACTCGGCTGAAGTTTTGACTGAAGAGGACAtaaaactgaaagaaaatGTCTCCAAACTGTTAGATATGCTAGTAGATAACACTACTTTAAAGAAGTTTGGTTGGCCAAGCACTTCAGAGGAGGTTGTCCTGTgcaaagttattgaaaattgcgGTCATGAGCTGTCAAAGGACAACGAGAATTACATAGAGCTGGACTACGCAACACGCATGCGTGAATATCTGAAGcttttattcaaattagttATTCACAACGATTCTATCAAGGAGCTGCTAAACAATTATCCGATTGATGAAGTTATCGAATACGTTTTGGGAAATGATGATAGTGATGAAGAAGACATCGAAAGTAAAAATGAAGTCGATATTACAGTATAA
Protein Sequence
MNQPISESPEEPVFSGDEFKRSKTTGIKILNDEKISTPSTVKTFTAVPMEPTKQISALSIAKPKVSPTKKKQDHYVMQTVKSESTKSDGAVTLDDDTIDFVLAENDEEHADEAKLGQPSGEITEEFHLSGEEGDGENGQVKEIVEHVCGKCYKTFRRVKSLIRHLEFCRFDSGYHLRKAEMLKNLDKIEKDAIIMEKKDICFCCSESYDTFHLGHINCPDCPKSFKTQMSYERHIFITHSEFNDFPCSICNAKLRSESLLKLHEEQHKNRGKPYACKICGKDFTRSYHLKRHQKYSSCSANENDTMSCKVCDKVFYRLDNLRAHLKQHLGTQVAKKPEYMCHVCKNCFYSLSTLNIHIRTHTGEKPFDCDLCDKKFSALVALKKHRRYHTGEKPYTCSVCNQSFAVKEVLNRHMKRHTGERPHKCEECDKSFIQATQLRTHAKTHLRPFDCYICEHKFKTQKQLDRHIKEHTRTKRTKREYECTICKKGFDNKAELKEHVDKGDHKPVAKRTKRSKIKDRRDCAVCDKIFDTAESLRFHILKVHECDPDDIFGEKPPAKKEPVYGKSSSKHSKILPTKKSPVSEKTVGTNNGVVVREFLVDEIPAVGSTSHQTIILENESYTVIPLDDLDKEDIQLPATEIKPQVVNTVKKEQRKSLAASLAAAIADNEDELLSDDDHSAEVLTEEDIKLKENVSKLLDMLVDNTTLKKFGWPSTSEEVVLCKVIENCGHELSKDNENYIELDYATRMREYLKLLFKLVIHNDSIKELLNNYPIDEVIEYVLGNDDSDEEDIESKNEVDITV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01196142;
90% Identity
-
80% Identity
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