Cind010482.1
Basic Information
- Insect
- Cacoxenus indagator
- Gene Symbol
- -
- Assembly
- GCA_035041755.1
- Location
- JAWNKX010000244.1:4056595-4059591[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0077 0.65 10.8 1.1 1 23 112 135 112 136 0.94 2 14 0.0046 0.39 11.5 1.0 2 23 140 162 139 163 0.93 3 14 1.3e-06 0.00011 22.6 1.8 2 23 173 195 172 195 0.96 4 14 0.0006 0.051 14.3 4.2 1 23 319 342 319 342 0.95 5 14 0.024 2 9.3 9.5 2 23 506 527 506 527 0.97 6 14 5.3e-07 4.5e-05 23.9 3.7 1 23 533 556 533 556 0.96 7 14 1.2e-05 0.001 19.6 0.2 1 23 561 584 561 584 0.96 8 14 6.7e-06 0.00056 20.4 3.6 1 23 603 625 603 625 0.96 9 14 0.0035 0.3 11.9 1.1 1 23 630 652 630 652 0.97 10 14 3.3e-05 0.0028 18.3 1.7 1 23 658 680 658 680 0.95 11 14 4.7e-05 0.004 17.8 1.0 1 23 686 708 686 708 0.98 12 14 4.8e-07 4.1e-05 24.0 1.3 2 23 715 736 715 736 0.97 13 14 2.5e-08 2.1e-06 28.1 1.1 1 23 742 764 742 764 0.99 14 14 0.051 4.3 8.2 2.1 1 23 769 792 769 792 0.92
Sequence Information
- Coding Sequence
- ATGCCCCACATGAAACTGGATGCGGAGAATATTTGTCGTATTTGCTTGCGTGAGCATAATGAGCTCTTCCTTATATATGACGAGACGCCCGTGGAGCAGGGATTGAACATAGTGGAGATCTTGAACGAGTGTACCCGCTACACGGTGGAGCGCTTCGACATGATGCCACACCAGATGTGCGCTGGCTGCATTATCGATGCACGTGCGGCGTATCGCTTTAAACGCACCGCCGATGAGGCCTACCGTAAGATGGTCTCCATGCTGGGGCGTATACCGCGGAAGAACACGGAGAACACCGTCGACAGTGGCACACAGACCGAGCAGAGTTCGTTGTATCCCTGCGAGATGTGCAATGAGAAGCTCTTTAGTTCGGGAGAGCTACGTCAGCATCGCAATGCTAGACACCATAACGAGCTGAGGTGCAAGGTGTGTAacaagttgtttgagcagttGCGCCTGCTACAAATGCATCTGGCTCAGGCACATCATGATCAGGGGATTATAACGGCCAATTTGCAGTGTAAAATGTGTCCGCGTGCCTTCACACGGCGCGACCATCTGATGCGTCACGTGCGTAATGTACATCAAAATATTGTGTCAACGGGGCCGAAGCACAACCAGCGTGAAATGGACATAGGTCAGGAGAAATTAGAGAACTTGTCTTTTCTCGAGGAACCTGAAATGGTGGTTTTGGCGTATGGCGGCGACTCTAATCTGGAACCGTACTGGCCACAGAAAACCGATTCAAACAACACCACGGAGTTAGGAAACGGCAACGACCAAGAAACGAATCCTATATCAAGCGATGATGAATCGAAACTGAATGGCGGCAATGTGCAACAAGAGTTACGACCCACGCTAGAACCCGATTTGAGTATGGAATTTCAGCAAACCAATGAAGTATCGGATGCCTATCTTAAGAAAGAGCACACACACGAGTCAGTGATGGGCAAGCACCAGTGTGACATATGCTTGCGTTCGTTTGGACGTGCGTGCCACCTCCAGTGGCACATGCAGGCAAAGCATGGAAAACAGAGGCGTTCTAAACCAGACAACCAATTCGGATATGGTACTGAGCACAACGGCGAGAACTCGGAATATAACAATATTGTTGTCGACCTCGGGGCTGAGGGGAATAATGAATTGAACGGAGAATTAACCGATGAAGGTGATCTGGTAGGAGGTCTGGAAAATACGGCAAAAGAGGACGACATTGAAATAAAAGCGGAACCCATGGAGTTCGAAAGCATTTCGACAGGGATGCCTGGAGAGGAGGACAGCATGCAGCAGCAGGTGAATTGGGTAGAGTGCAAGTTCACTGATAATTTCTCTGTGGTGGAAGCCATTGACCAAGTTACGCAGGAAGAATTGGACTCCCCAGCAAATCATCACGATGCTGCCACAAACGACCAAAAACTCCTCTCACAAAGCAAACCTAAGGTGGAAATCGTTCGTGAATACCTGAAGAAAAAGCGTGCGTCACGCAAGCCGAAAAGCGAACAGAACCCAGAGAACCGCTGCGATCTTTGCCAGCGAACCTTTTCGCGTCACTGTCACCTACTGCGGCACAAGCTATCCCATCTGGAACAAAAGCCACATAGGTGTCCGCATTGTCCGAAGTCCTTCGCACGTAGCGATCATTTGAAGGCTCACGTGATGAGTCTGCACGGGAACAAAGACTACAAATGCACCATTTGTGAAGCGGCCTTCACACGGCCAGAAGCACTCGAGCGCCACAAATTAAGCAAACATGATGGCGCCGTCATGGACGGTGCCAACGACCTTGCTACCTACGAGGCGAAATTGCACGCGTGCGAGTATTGCGAAAAGAAGTTTACCAGCAAAAGCTACTTACGGAAGCACACGCTCATACACACCGACCTGCTGTACGCCTGTAAGAGCTGCGAGATGACCTTCAACGGACGGCAACAGTTGCGAGATCACGAGAAAAGACACTCGACCGATCGCAACTTTCTGTGCTGCATCTGCGGTGATAGCTTCGCGCGTAATGACTATTTGCGAGTGCACATGCGACGTCACAACGGCGAGAAGCCCTACAAGTGCAAGTACTGCAGCAAGGGATTCCCGCGGGCCACCGATGTCAAAGTACACGAGCGCTACCACACCGGCACCAAGCCCAACGTGTGCACGCTCTGCGGCAAGGGCTTTCATCGCGCATACAATCTTACTATACACATGCGCACACACACCGGCGAGCGTCCGTACAAGTGCGACCAGTGCCCCAAGAGCTTCACTCAGAGCAACGATCTGAAGGCGCACATACGTCGGCACACCGGCGAACGCTACAAATGCAACGAGTGCGACGCCTGTTTCCTACAGCTCTATGCAATGCGACATCACGCACTCAATGCGCATGGAACGCACATAGAATCGAAGACAGGCCGGCTGCAGCGCACGGGGCTCTACGACAACCCGCAAACTCAGCCTCGGATAACAAAGGTTTGCTTGGCACCAGCCATCTATGTTACACCTCAGAGCCAGACGCAAACCCAGACTATATCAACGACACGGACTCTGCCCACTTCTGAACTGCAGTCGCAACAGGAAGCAGAACTTCCGACAACACATTCGCCGCCACAGGACAACACGGACAATAGTTTTGGAGAGACCACCGTACAAACCGTGTTTATTGAACCGTTAACCGCGCAGGTGTCTGTTCCCGGCCACGAATATATGTCAGCCTACACGCTCGATCTTCCAAGCGCCATCGTGCGCTTTCAACAAGCCATCGCCAACCCACAATCAGCTGAAGGCAACCAGGGAGAGCGGCAAACATGA
- Protein Sequence
- MPHMKLDAENICRICLREHNELFLIYDETPVEQGLNIVEILNECTRYTVERFDMMPHQMCAGCIIDARAAYRFKRTADEAYRKMVSMLGRIPRKNTENTVDSGTQTEQSSLYPCEMCNEKLFSSGELRQHRNARHHNELRCKVCNKLFEQLRLLQMHLAQAHHDQGIITANLQCKMCPRAFTRRDHLMRHVRNVHQNIVSTGPKHNQREMDIGQEKLENLSFLEEPEMVVLAYGGDSNLEPYWPQKTDSNNTTELGNGNDQETNPISSDDESKLNGGNVQQELRPTLEPDLSMEFQQTNEVSDAYLKKEHTHESVMGKHQCDICLRSFGRACHLQWHMQAKHGKQRRSKPDNQFGYGTEHNGENSEYNNIVVDLGAEGNNELNGELTDEGDLVGGLENTAKEDDIEIKAEPMEFESISTGMPGEEDSMQQQVNWVECKFTDNFSVVEAIDQVTQEELDSPANHHDAATNDQKLLSQSKPKVEIVREYLKKKRASRKPKSEQNPENRCDLCQRTFSRHCHLLRHKLSHLEQKPHRCPHCPKSFARSDHLKAHVMSLHGNKDYKCTICEAAFTRPEALERHKLSKHDGAVMDGANDLATYEAKLHACEYCEKKFTSKSYLRKHTLIHTDLLYACKSCEMTFNGRQQLRDHEKRHSTDRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCKYCSKGFPRATDVKVHERYHTGTKPNVCTLCGKGFHRAYNLTIHMRTHTGERPYKCDQCPKSFTQSNDLKAHIRRHTGERYKCNECDACFLQLYAMRHHALNAHGTHIESKTGRLQRTGLYDNPQTQPRITKVCLAPAIYVTPQSQTQTQTISTTRTLPTSELQSQQEAELPTTHSPPQDNTDNSFGETTVQTVFIEPLTAQVSVPGHEYMSAYTLDLPSAIVRFQQAIANPQSAEGNQGERQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -