Cind001199.1
Basic Information
- Insect
- Cacoxenus indagator
- Gene Symbol
- bab1
- Assembly
- GCA_035041755.1
- Location
- JAWNKX010000073.1:136876-138649[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-17 2.3e-14 53.1 0.0 1 43 58 101 58 103 0.95 2 2 3.3 6.4e+03 -2.8 0.7 3 13 203 213 201 216 0.78
Sequence Information
- Coding Sequence
- ATGCTGGAGAATTCTCACGTTTGGATgggtggcggcggcggtgcTGGTTCAGCGCTTTCAGCAGATAGCTATCAATACCAATTGCAGTCGATGTGGCAAAAATGCTGGAACACGAATCAGAATCTCATGCATCATTTACGTTTTCGAGAACGTGGCCCACTTAAATCCTGGCGGCCAGAAACTATGGCCGAGGCGATCTTCAGCGTGCTCAAGGAGGGTCTCTCGTTGTCGCAGGCAGCACGAAAATATGATATACCTTACCCAACCTTCGTGCTCTACGCGAATCGCGTACACAACATGCTCGGCCCGTCAATCGATGGTGGTCCGGACTTGAGGCCGAAGGGGCGTGGCAGGCCGCAGCGAATACTACTTGGTATCTGGCCAGACGAGCATATCAAAGGTGTCATTAAAACGGTCGTTTTTCGTGATACAAAAGATCTAAAAGACGATGTTAGCTTGGGTCAGAACATACCAACCTATGGTAGACACTCGCCCGTTTTTCCCTTTCAGGACATGCCACTTAACTATCCTGGCTCATCAACAGTTCAGCCTGGCGGTCCCTGTTCAAATGGCATACCCACACCCACCGGCGATCAAATGTCTCAAGAAGCGACCGCTGCCGCtgtggctgctgttgctcACAACATACGCCAACAAATGCAACTGGCCGCGGTTCCACCGCATCTACAGCCACCGCATCACGGTAGTCCCGGTGGAATACAGCTGCCGAAAGCGAGTATCTCACCAGCACTGAGCAGTGGCTCTAATCCCGCTATTGGACCACTCGGACCGCGTCATGCACCTTCACCATGCGGTCCCAGTAGTGGCATACCGGTTCTGCCACCGAATTTACCCCCTAGTATGGCGGTCGCACTAAGTCGCTGTGACCCGGCAGCACTTCtcagtcaacaacaacaacagcaattgcaGCAGTTGCatctgcagcaacaacatgcgTTGCAACAGCACAAATCTAGTTTCGGTGCAAGTTCCATAACACATTCATCACCATCAGCCTcggccgcagcagcagcaatcagTTCCactcatcatcaccatcaccttcatcagcagcaacaacaacagcatcatccTCACCATCATcacaaacaacagcagcaacatcagcaacagcagcaacatcaacaacaccatcaCCATCTTGCagctcaacagcaacaattacaTCAACAATCTTCCAGCGCATCTTTATCCGTTAGCAAATCGAAAGCACTATCTACACCTGAACGTCGTCACAGCACCGAAACACCCCGTCTGCAGTCACCGCTCACCGAACTCAGCTTAGACATGAGCTACAAACGCGAATATTCGCCCACACGTCTTTTTGCCGAGGATCTTGCTGAACTTGTTGGTGGCGCTTCATTGGCTTCCTCCTCATCTGGCTTGGCTGGTACTAATGCAACAACTTCCGCTTCCATTTCAGCTAGTACAGCGGTCACGACAGAGTCACCCGCTGCCACTTTAAGCACGAGCATTAGCTCAAGTAGCAGCGGCGGCACCATCAAAGTCGAGCCGATCACTACAAGCAGCGAGTAA
- Protein Sequence
- MLENSHVWMGGGGGAGSALSADSYQYQLQSMWQKCWNTNQNLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDTKDLKDDVSLGQNIPTYGRHSPVFPFQDMPLNYPGSSTVQPGGPCSNGIPTPTGDQMSQEATAAAVAAVAHNIRQQMQLAAVPPHLQPPHHGSPGGIQLPKASISPALSSGSNPAIGPLGPRHAPSPCGPSSGIPVLPPNLPPSMAVALSRCDPAALLSQQQQQQLQQLHLQQQHALQQHKSSFGASSITHSSPSASAAAAAISSTHHHHHLHQQQQQQHHPHHHHKQQQQHQQQQQHQQHHHHLAAQQQQLHQQSSSASLSVSKSKALSTPERRHSTETPRLQSPLTELSLDMSYKREYSPTRLFAEDLAELVGGASLASSSSGLAGTNATTSASISASTAVTTESPAATLSTSISSSSSGGTIKVEPITTSSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -