Cind002530.1
Basic Information
- Insect
- Cacoxenus indagator
- Gene Symbol
- -
- Assembly
- GCA_035041755.1
- Location
- JAWNKX010000167.1:2245142-2246705[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.2e-13 1e-09 38.2 0.0 3 39 329 365 327 369 0.93 2 3 0.011 21 5.1 0.0 27 37 400 410 395 415 0.90 3 3 4.9e-18 9.4e-15 54.3 0.0 2 41 437 476 436 478 0.94
Sequence Information
- Coding Sequence
- ATGGGACACACGTCGACACTAATGGAAATAAATCAGTCTTTGCGTGATGACGCCGCGAGCTGTGAAGTGACGCTAGTAGCCAAAGATGGCTGTACGGTACGTGCTCATCGCTTCGTTCTGAGTACTTGCAGCGAGCTAATGCGAAATGTTCTGGTCGATGTGCCACAAGGTCAGGAGTGCACCATAATGCTGCCGGAGATCAATGGTGCCCTGTTGGACAGCATGCTCTCATTCATATACGTGGGCGAAACGAATTTGCCATCGTCTAGTCTGACGGAATTTCTGGAGGCAATCAATTTGCTTGGCATAAAGTCGGCAATTAGTTTTGAGTGTAGCACGGCAAGTTTAAGCGCTAGCGGTGTGGCAGTTACCGATGGCATTGAGGATCCATTAGACGTAAAGGCTATCAGTGGTCTGCAGATAACTCAAGAGGAGTTGCTTGAAGAGGATGGTGTTGATAAACTGGTAgTGAGCAACGTTATTGAGCAACCGTCGGATGGAGCGCGCGGATTGGAATATTTAGATTTATACAACCAGCAGCAAAAGATTACCTACTCCATTGAACACATGGGCGGTAGCGGTGGGGGCGGAGAGTTTATCCTTACAACGGACAATGAAAACGCATATACGTTGAATACAGGACAAGCTGGAGATAAATTGGCACACGTAACATCATCCGTTGTGGAGAGTAGTGAACTGGTTGAAGAGGAGACCGAGGAGTGTGAGGATGTCGATGGTTCGAATATAATCGAAGAGGGTTATACCAGCGGCTGCGAACGTCTAATCGATATGAGTGGCACTGATATTGAATTGAGCGATGCTGCGGACACGGCCCAAGGCGACGGAGCCGAAGCAGATGCAGAAATGTTAGCTGCTGCGAAAGCGAGTGTAAAAAGGcgcacattaaaaattaaacgagAACAGAAATATGTTAATCAGAGCTCAGGTAAAACAAGAAACCGAGTTAAAAATCCAGTTGAAGCCGACAATCTGGAAATGGCTGCACATTCTGTACTCACAGAGGGCTTGAGTCTACAGAAAGCTGCTGACAAATTTGATGTCTCAAAAACTGTGTTGTGGCGACGCATGCGAAAAGATCCACTTTATACAAAAAGCGGTCGCGAGAAACCAACGCTTGCACTTGCATACGAGCGTCTGAAGAGTGGTGACTCACTTAAGAATATAAGCAAGGATCTGGACATACCGATGTCTACTTTGCATCGTCACAAAGTACGTCTCTCGGAGGAGGGGCGTTTGCCGCATAACGTTTCTTGTCGAAGACGTGAATCCACGCCCAAAGATGAACTCAACGAGAAACTTGCCAAGGCAGTTCATGCCTGTGTGCATGAGGGCATGTCTCAGAATCACGCCGCCACCATTTTTGAAATAGCCAAGAGTACTTTGTGGCGTCATTTGCGCCGACGTGTAGCAGAGGTAAAGGCAGAGCAAGAGGCTGAACAGGAGGCAGCCGACTCGGAATATGTTAAAGAGGAGATAGTCTAA
- Protein Sequence
- MGHTSTLMEINQSLRDDAASCEVTLVAKDGCTVRAHRFVLSTCSELMRNVLVDVPQGQECTIMLPEINGALLDSMLSFIYVGETNLPSSSLTEFLEAINLLGIKSAISFECSTASLSASGVAVTDGIEDPLDVKAISGLQITQEELLEEDGVDKLVVSNVIEQPSDGARGLEYLDLYNQQQKITYSIEHMGGSGGGGEFILTTDNENAYTLNTGQAGDKLAHVTSSVVESSELVEEETEECEDVDGSNIIEEGYTSGCERLIDMSGTDIELSDAADTAQGDGAEADAEMLAAAKASVKRRTLKIKREQKYVNQSSGKTRNRVKNPVEADNLEMAAHSVLTEGLSLQKAADKFDVSKTVLWRRMRKDPLYTKSGREKPTLALAYERLKSGDSLKNISKDLDIPMSTLHRHKVRLSEEGRLPHNVSCRRRESTPKDELNEKLAKAVHACVHEGMSQNHAATIFEIAKSTLWRHLRRRVAEVKAEQEAEQEAADSEYVKEEIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00251461;
- 90% Identity
- iTF_00251461;
- 80% Identity
- iTF_00251461;