Cpus004829.1
Basic Information
- Insect
- Cabera pusaria
- Gene Symbol
- -
- Assembly
- GCA_954871355.1
- Location
- OX940887.1:10058851-10065310[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.13 18 7.4 4.9 2 22 177 197 176 197 0.95 2 17 4 5.8e+02 2.7 0.4 1 20 292 311 292 314 0.70 3 17 0.44 64 5.7 0.4 2 23 448 469 447 469 0.96 4 17 0.38 55 5.9 0.5 3 23 548 568 547 568 0.96 5 17 0.025 3.6 9.6 0.5 1 23 576 598 576 598 0.97 6 17 0.07 10 8.2 3.5 1 23 637 659 637 659 0.95 7 17 0.0002 0.028 16.3 4.0 1 23 667 689 667 689 0.99 8 17 2.2 3.1e+02 3.5 1.1 1 23 736 758 736 758 0.94 9 17 1.8 2.6e+02 3.8 1.7 1 23 770 792 770 792 0.96 10 17 0.79 1.1e+02 4.9 0.9 1 23 845 867 845 867 0.95 11 17 0.0095 1.4 10.9 0.1 2 23 874 895 873 895 0.97 12 17 0.0066 0.95 11.4 1.6 1 23 961 983 961 983 0.95 13 17 0.084 12 8.0 0.8 1 23 989 1011 989 1011 0.92 14 17 0.0055 0.79 11.7 2.6 1 23 1101 1123 1101 1123 0.97 15 17 0.00014 0.02 16.7 1.4 1 23 1129 1151 1129 1151 0.99 16 17 0.26 37 6.4 2.0 1 23 1243 1265 1243 1265 0.96 17 17 0.008 1.2 11.2 5.6 1 23 1276 1298 1276 1298 0.98
Sequence Information
- Coding Sequence
- ATGGGCCTCCAATACGCTGAAAGAGACATTGTGAGCTGTAACAGTGATTCAAATGACGCGAGTTCGTCCCACGCAGACACAAACAAAGACGAGTCACACGAAGGACAACACTCGCCTCACTCCGACGATAAGTCGCACAAGCAGAGCCGGAAGGCGCCCCGCCCGATCCCGCAACTCATACCGCTTAACGCCTCGACACCCAATCAGAAAACATCCGGCGAACCGCCCGCTAAGAAATTCAAAGAATCCGTCAACTTGGACGGTTTCGGAAATTTACCGGACGACATCACCTTGATTCCCGTGACCGCTCCGGCCAAAGAAGCCCCAGCGCGGAAGAAAAATAACTCTTTTTTCGACAAACTCAAAGAGAGACTTCTCACCGAGACCGGCGAGGAAGGATCCCTCAAATGTAAGAACTGCGGCTTTGAAAGCAAATGTCTGTCCGAGCATTCCGTGCACGAGAAAAATTGCACCGTACAATCCAATCGCGTGCCTATGAACGCGGCGATGCCGACTATGGGCTCCACGCGCTGCCAGCACTGCAGGCATCGCTGCAAGTCCAGTGCCGACCTATACGTGCACATGCAGACTTGCGGTAAAAACAAAATGCCCGCTGACAGGAATTCGGATACCAAATGCCGAGCTTCGACGTCGCAAGCTGAAAAGGAAGCAGAGCCTCACCCGATGGAGAATGTTGTATTCGTCTGGAACAATATCAATCAAGATCCTAACAAATTCGAGAGACCTCTGGACATCAACATCAACGACGACTCTACTATCACAGAAATGAACAGGCACTACGAAATGGAGGCCGTGGACGAAAATGAGAGCATGAACCTGTCGCCGAACAGTCTGAGCCTCGGGAAAAACGTGTACAAATGTCCAGACTGCAAGTTCTGGGCGGCGACCGCGTCTCGCTTCCACGTCCACATAGTAGGTCATCTGAACAAGAAGCCGTTCGAATGTTCGTTGTGCAGGTACAAGTCGAACTGGCGGTGGGATATCACGAAGCATATAAAGTTGAAATCCGCGCGCGACCCGGAGCACAACGAGGCGAAGGTTCTGATGACCGACGAGACCGGCAGAAGGAATTACAGCAAGTACAACAAGTTCCTGGCGGTGCCGGTTTTGAACGAGAACGGGGAGAACGAGTTCCACTATATAGATCCGAACACGTCGGTGGACGCGTCGATGGAGATGGACGAGACGTACGGGAACGAGACGAGTGACATGCTGCACGTGTCGTACGACATGCCGCTCAACCTACAGACACAACATCCGGCGTACAACTTGATGGACAACAGATTGCAAGACCCTAAGAAGCCTAAGAAAACACTGTGGAAGTGCAAGAAATGTAACTACAAAGACCCATCAAAAGAAGCGTTACTAGAACACGTAAGACAACATTCTAAGGAGGGGGCGGAAGAAGGCCACAGCAATAATAAGAAGCTCGAAAACGCCCCTGATCCCGCTGACTTGGCGTACCGATGTGGACATTGCAACCAACTGTCCAACTGGAAACATGTTATACAGAGGCACTGCCGACTCAAACACGACGGTATTATAAAAGTGATCACAACAGTTAAACCCAAACCCGAGCTTTCTAATATCGAGGGAGCGGAAGGGGCGTACAACGATCTCTGCACCAAGTGTCCTTTCAAAGCCAACGATAAGAAGCAGCTCCTCGAACATCTAGCGCAGCACCAACCCTCCCCCGAATCTATATTCAAGTGTTACTTCTGTCCGTACTTTGTCAAAGACGAACAAGACTTGATACAACATCTTCTCCTCCATGGCATTACCGACCCGGAGGATTATATCTCCAAGGCTATGGGCTGCCGGTCGCCCCTCCCCGACCGCGTCCTGACAGGCGCAGAAATCCCGCCCCCCGTGAACACCACCAAAAGACACAAATGCACCGACTGCCCGTACGAAACCAACAGCAAGTCTCAGTATATGTACCACGAACAGTTCCACCGACTGCCGGCCGACACTCCCTACAAGTGTCCGGAGTGCAACTACAGCGTCTCTAAACGACACCTCCTGCACCAACACCTGCGAGTGCACGGCATTCACCCCTCCGACAAAAAGAAGAACGAATCCGAGGCGGAACTGGAAGCCAGCAGCTCGAAAGCAGACAAACAGGAGTCCGTCGAACAGATCCCGTTCGTGTGGGTGTCGGCGCGGAACGAATTCCACAAAATGTACAAGTGCCGGTATTGCTCCTACGTCAACTCCCAGAAGGCCAAGCTGCCCAACCACGAGAAGATTCACTGCCTCGAGTTCGAGAACAGCGACGTCATCATTTACAAGTGTTTGGAGTGCAAGTTCACGTGCGACGACGCGGAGAAGGCCGCGGAACATTCCAAGAAGCACGGGCTGCTGTACGGCCGCATCTACAGCTACGTGGAGGACGACCTGCCCGACGAGGAGCAGATAGCCAAGCTACGCCGCCTCATCGACCAGGAAAAGGCGCTCGAGGAGTCCAACAAGGAGGATGCGCCCGCCGATCAGACGGACCCCAAAATTATGTTCTACTGTCGAAAGTGTCCGGCCTTCTTCTTCAGCGAGGCCGAAATCAAGGTGCACGAAAAGTTCCACGGTTTGACGCTAGAAAATAAATGCAAACTCTGCGAGTTTTCGGTCCCGGACGAGAAAGAATTGATGGCGCATATGAGCGTGCACTTGGACGATTATCATATCAAAACGAACATGTTCAAATTTGTGCATAACTACCACTCGCAGTACAAGCCGCCTCGGCTGGAGTGCTTGCGGAAGCAGGATTCGTCGGAGGTCACGTGGGTCGCGATACTCAACAAACTGGTAGAATACGCGGAGCCGGTTCACAGAAAGTCCGATTCGAGACACACACCGAAACAGTACCATTGCAAAGAGTGCCCCGCCAAGTTCTTCAAGAGCTCGGCGCTCTCTTATCACATGGGCTTGCACGGCGGAGAAGGCGAACACAAATGTAGGAAATGCAGTTACGCCGTCAAAAACGTCGGCAATCTGGCCAAGCACGAGGTGCTGCACGACACCGAGCACAAGACCGCCGGCTGCGAGTACGACTCCGGCGAGGACGCCGACTACAAGAACGTCCCGATCTCCGGCACGGATCTCTTCCAGAGAAAGACCGAGGCTCTCAAGCGAGTCATGATCGACAAGGACAAGTTGGTGAAACCCAACGACCACTTCCCGCCCGTCCTCCAGGCCGACCCGCAGTTCGGTTACTTGATGCACGGAAACCCCGAGTTCATCTATCCGACGTACCTGAAGAACGGCCGCCAGAAGGAGAAAAGGTACAAGTGCCACAAGTGCCCGTCCGCATTCGAAAAGAGAGAGCAGTACAAGATCCACCTCTCCCTGCACGGCTCCAAGCAGAGGTACAAGTGCGAGCTGTGCGACTACTCCGTCAAGTACTATGCCAACTACGTCCAGCACATGCGGAAACATCAGATGAACGACGAAGCTCAGGCCGAGAGAAAGAAGGGCAGCAACGGTTGCGCCGAGCTCGACAACCCGGACGATGCAAAACCAGACGACAGCGTGGACAACATCAAGCTAGCGATCAAAACTATGCCGAAGGGCACGCCGAAGACGGACTTCCAGCAGTTCTCGATCAGGGACCAACAAACTCTGAGACTGTTGCAGCGAAAAAGGTTAATGATGAACGGCGGGAAGGAGGCCGGCCCTGCGGACGCGTCGCCGGCCAAGGAGCGCAAGCTGCACATGTGCCTGCTGTGCCCCTACACTAACCAGAGGCAGGACGCGCTCAACAACCACTACCGGCGACACGACGCCGCCGACATACTTAACATCGGCAATCACAAGTGCTCGCACTGCGACTTGGTAGTGGTCCAGTCGCACTTCCTCCGCGAACATTTGAAGACTCACTTCAGTTATCACAAGACTCTGACTCCCGAATGCTTCGCGGCGAACGAGGACGTCACCTTCACCATAAGTAAAGTGGACGACGATAGCGAACCTGTTGATCTCAAATTGGACATGGAAAGCAAAATTGTGTTcgatgaagaaaaaatatttgtaaatatgaTAAGTGGAGAAATTGTCGTAGAATAA
- Protein Sequence
- MGLQYAERDIVSCNSDSNDASSSHADTNKDESHEGQHSPHSDDKSHKQSRKAPRPIPQLIPLNASTPNQKTSGEPPAKKFKESVNLDGFGNLPDDITLIPVTAPAKEAPARKKNNSFFDKLKERLLTETGEEGSLKCKNCGFESKCLSEHSVHEKNCTVQSNRVPMNAAMPTMGSTRCQHCRHRCKSSADLYVHMQTCGKNKMPADRNSDTKCRASTSQAEKEAEPHPMENVVFVWNNINQDPNKFERPLDININDDSTITEMNRHYEMEAVDENESMNLSPNSLSLGKNVYKCPDCKFWAATASRFHVHIVGHLNKKPFECSLCRYKSNWRWDITKHIKLKSARDPEHNEAKVLMTDETGRRNYSKYNKFLAVPVLNENGENEFHYIDPNTSVDASMEMDETYGNETSDMLHVSYDMPLNLQTQHPAYNLMDNRLQDPKKPKKTLWKCKKCNYKDPSKEALLEHVRQHSKEGAEEGHSNNKKLENAPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGIIKVITTVKPKPELSNIEGAEGAYNDLCTKCPFKANDKKQLLEHLAQHQPSPESIFKCYFCPYFVKDEQDLIQHLLLHGITDPEDYISKAMGCRSPLPDRVLTGAEIPPPVNTTKRHKCTDCPYETNSKSQYMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGIHPSDKKKNESEAELEASSSKADKQESVEQIPFVWVSARNEFHKMYKCRYCSYVNSQKAKLPNHEKIHCLEFENSDVIIYKCLECKFTCDDAEKAAEHSKKHGLLYGRIYSYVEDDLPDEEQIAKLRRLIDQEKALEESNKEDAPADQTDPKIMFYCRKCPAFFFSEAEIKVHEKFHGLTLENKCKLCEFSVPDEKELMAHMSVHLDDYHIKTNMFKFVHNYHSQYKPPRLECLRKQDSSEVTWVAILNKLVEYAEPVHRKSDSRHTPKQYHCKECPAKFFKSSALSYHMGLHGGEGEHKCRKCSYAVKNVGNLAKHEVLHDTEHKTAGCEYDSGEDADYKNVPISGTDLFQRKTEALKRVMIDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKGSNGCAELDNPDDAKPDDSVDNIKLAIKTMPKGTPKTDFQQFSIRDQQTLRLLQRKRLMMNGGKEAGPADASPAKERKLHMCLLCPYTNQRQDALNNHYRRHDAADILNIGNHKCSHCDLVVVQSHFLREHLKTHFSYHKTLTPECFAANEDVTFTISKVDDDSEPVDLKLDMESKIVFDEEKIFVNMISGEIVVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00790785;
- 90% Identity
- -
- 80% Identity
- -