Cpus012681.1
Basic Information
- Insect
- Cabera pusaria
- Gene Symbol
- -
- Assembly
- GCA_954871355.1
- Location
- OX940892.1:1018027-1026936[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.28 41 6.3 1.8 3 23 447 469 445 469 0.92 2 11 0.03 4.3 9.4 0.6 2 22 491 511 490 514 0.89 3 11 0.011 1.7 10.7 5.5 1 23 528 551 528 551 0.97 4 11 0.097 14 7.8 0.7 3 22 558 577 556 580 0.88 5 11 0.057 8.2 8.5 0.0 2 21 631 650 630 651 0.94 6 11 1.8e-05 0.0026 19.5 0.5 1 23 707 728 707 728 0.98 7 11 0.00015 0.021 16.7 2.0 1 23 734 757 734 757 0.97 8 11 0.71 1e+02 5.0 0.6 1 23 794 818 794 818 0.96 9 11 0.091 13 7.9 8.6 1 21 827 847 827 849 0.93 10 11 0.0019 0.27 13.2 1.8 1 21 855 875 855 880 0.92 11 11 0.006 0.86 11.6 2.2 1 23 886 909 886 909 0.94
Sequence Information
- Coding Sequence
- ATGCTGTCTCCACGAGATGATGACGACGACGACACCCATCTCTGCATTAAGTGTAACTCCACCATTGTGGGCCTGGACAACTACGTCAAACATAGAAAGGATCGATGTGGCAAAACAAAGACGATCGAGAACAAGGCTGACCTGCCCATCGACTCCTTAGATCCCACGTACAGCCTAGGAGCTGACGTATTTTTTCAATCACTGGAACTGCAGAGCAGCGTTAAGAAAACATCCTTGTCCAGACTGACTCCTCCTATACCGATCTCAAAACCGAGCATCGATAGAAAGAGCATTCTAGCCATAGCTTCCACATCGAGGGATATCCCTCGAATGAGTCCTCTCGAAGCCAATCTTAGAGGAGAGGGCTGGATCGGAGGGCACACGCTCAGAATAAGCGGCAACGAGGACAATCAGACGAAGCTCATAAACGCTGTGGCCAGTATCAGTGGATCGGCGAAGAAGGAAACAAGTTCTTCTTATACCTTAGGATATACTGACTACAAAGGTGACGATGAAAGCGACGAATCAGAAGTCTCGGAAGAAGATGACGAAGACGAACAAAAGTGGAAACCGCCCCCAAACTACACTGGAGGCAAGTGGCACCCGGACTCACCAGAACACGACTGGGACGACCAGGAACATACAGCCACTTGGAAGACGCTTCTGCCAGAAGTGGACAGAGATGAAGACTATGACGCCCCGCCCCCGGGACATACCAAAGGAAAATGGGTACCGGGAGCGAATGAAAAGACACAAATCATGCAAACTACTATACAGACGAAGGGATCCGTCCAATATTGGTGCGGACCTTGCAACAGGCGACTGGGTTCTCGAGCTATTTACGACAAGCATTTGAGATCGAGCTTACATTTAAAGAAAGTTTTGCCTGAACACGAACTAGAATTCTCCGGTCATTTGGAACCGATTAAAATGAGCGAGAAACGTTCCACGAGACCTTCGAGGTTTGTGGACGGTGGGGTCTACTCACTAATTGAAAGAAAGAAGAGGCAGAAGAAAGACATCAGTAAGATTAAACCCGagacaaaaaaaagaaagcGAAAGGCCACTTTTGTCCACTGCGCCGGGTGTAAGTCTCGAGTGAGGCAACACCTTATGGGTAAACATTTAATATCGCATTATCACTTCAGAAAAGCTGCCGGAGTGACAGACGCAGTATACCAGCAGCTCATTCTAGATAACGTGGACGCGATCGTCCATCAATCCCCGTTCCAGTGCAGCCCTTGCAAGTTCTACACTAACTGGCTTCCAAACTTCATGCAGCACTGGCGATCAGAGGAGCATGAATGGAAAGTGGCGTTCATCGAGGGCAACTTCTGGTGTTCTTTCTGCAAATACGAATGCGCTTCATCCCAGGAGATGCTGCAGCACATGAGGAGTTCTGATCACAGCGAGGTCGTGGCCGTCATCAACAGGTCTATGCCGATTATCAtaagaaaaaaaactgttttaaaaTGCGAAACGTGCTCTGAAATCTTTCGACTtaatattgaattaaaaaaGCATAGTCAGAAGTCGGGCCATTCTCTAGCTTACACCGCGACGGACACATACCAGGAGCTACATAAATGTCGACATTGTAAAGCCAAGTTTAAGACCTCGCTCACTCTCGCAGCTCATTTGAAGTCGAGACATAAACATAAGAGACATCTGTGCCTGGTGTGTTCCAAAACCTTCGACTCGGCGATGGAAGCCGAGCGCCATCGTCAGTCGTCTGAACACAGAATAAACAGAAAAGAAATGTTAATGAAGCAGGGCGTCATAACGAAGGATTTGAGGAAGAAATGTCCTTACTGTCCAGGTGACGTCATGATGAAGAACATTTTGGTGCTGAAGGATCATATCAGAACTTCTCATCCTGATATTAAAAAATCGTGCCCCAAATGCGGCATGGAGTTCATACTTTCCCAAGAGGTGACGAGCCATATAAAGGCCAAAGCTTGCCAGTTCAAACAACCGAGTGTCGATAAGTCAGAGCTGTGGAGTTGCAGCCAGTGCCTCTTCACCACCGAGTCACAAGCAGAGTGTTTCTTCCACGAAGTCTTGCATAAGCCTCCAGAAATTAAGATGATAGGAGACGCGAAAAAAGTGATCGAAAAGTACTCCTGTCCACTTTGCCCAAAGGTTTTTAGAAAAGCTTCGTTAAGGCTGCATTTGAGGCAGCACACGTTCGAGAGACCGTTCGTTTGCTCCATTTGCAAGGCTAACTTCACCAGGCACAGTACTTTGTCCAATCACGTAAGGAACGATCATGGAGAGAACGCGCAGAAGACTAAACCAATGAAATGGGATTATGAAGATCAGACCTTGAAAATACCTAACAGGGCCGAGTTATCTTCAATGCCATCTTCTTCATTCGAACATAGGTGTAAAATGACTGATTGTTCTTTCGTGGGTGCAACTGCTCTGCAATTAGTGAAgcATGAGAAGGTACATGGTATTGTAAGGCAAGAACAAAAGCACATATGTCCACACTGTTCTTTCAAAACCAACCAATCCAGCCACTTAAAAAGGCATTTGCAGTGCCACAAAGGCGATAAACCATACGCTTGCCCACACTGTGATTTCACTTGCGGGAgtttggAAAATCTTCGCAAGCACGTACTTCGCAGCGGCCGACACAAGGACGTTTTTCTGTATCTTTGCAAACATTGTGAATATAAGACTAACATGGCCTCGGACCTTCGAAAGCATTTAAGCAGTGACCATAGCGAGGaatataacatgaaaacagcgCTGCAAGCCACAAAGGCTCATTTGATGAAAAACTGTTGa
- Protein Sequence
- MLSPRDDDDDDTHLCIKCNSTIVGLDNYVKHRKDRCGKTKTIENKADLPIDSLDPTYSLGADVFFQSLELQSSVKKTSLSRLTPPIPISKPSIDRKSILAIASTSRDIPRMSPLEANLRGEGWIGGHTLRISGNEDNQTKLINAVASISGSAKKETSSSYTLGYTDYKGDDESDESEVSEEDDEDEQKWKPPPNYTGGKWHPDSPEHDWDDQEHTATWKTLLPEVDRDEDYDAPPPGHTKGKWVPGANEKTQIMQTTIQTKGSVQYWCGPCNRRLGSRAIYDKHLRSSLHLKKVLPEHELEFSGHLEPIKMSEKRSTRPSRFVDGGVYSLIERKKRQKKDISKIKPETKKRKRKATFVHCAGCKSRVRQHLMGKHLISHYHFRKAAGVTDAVYQQLILDNVDAIVHQSPFQCSPCKFYTNWLPNFMQHWRSEEHEWKVAFIEGNFWCSFCKYECASSQEMLQHMRSSDHSEVVAVINRSMPIIIRKKTVLKCETCSEIFRLNIELKKHSQKSGHSLAYTATDTYQELHKCRHCKAKFKTSLTLAAHLKSRHKHKRHLCLVCSKTFDSAMEAERHRQSSEHRINRKEMLMKQGVITKDLRKKCPYCPGDVMMKNILVLKDHIRTSHPDIKKSCPKCGMEFILSQEVTSHIKAKACQFKQPSVDKSELWSCSQCLFTTESQAECFFHEVLHKPPEIKMIGDAKKVIEKYSCPLCPKVFRKASLRLHLRQHTFERPFVCSICKANFTRHSTLSNHVRNDHGENAQKTKPMKWDYEDQTLKIPNRAELSSMPSSSFEHRCKMTDCSFVGATALQLVKHEKVHGIVRQEQKHICPHCSFKTNQSSHLKRHLQCHKGDKPYACPHCDFTCGSLENLRKHVLRSGRHKDVFLYLCKHCEYKTNMASDLRKHLSSDHSEEYNMKTALQATKAHLMKNC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -