Cpus038474.1
Basic Information
- Insect
- Cabera pusaria
- Gene Symbol
- -
- Assembly
- GCA_954871355.1
- Location
- OX940910.1:1712422-1715869[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0057 0.83 11.6 0.9 1 23 262 285 262 285 0.97 2 18 0.033 4.7 9.3 2.0 1 23 290 313 290 313 0.92 3 18 3.2 4.6e+02 3.0 1.6 2 23 317 338 316 338 0.92 4 18 0.56 81 5.4 4.1 3 23 345 366 344 366 0.89 5 18 0.00011 0.015 17.1 0.8 2 23 430 452 429 452 0.96 6 18 0.0002 0.029 16.2 1.2 1 23 458 481 458 481 0.93 7 18 0.018 2.6 10.1 0.9 2 20 485 503 484 505 0.94 8 18 0.17 24 7.0 0.3 3 23 515 536 514 536 0.96 9 18 0.0043 0.62 12.0 0.5 1 23 541 564 541 564 0.95 10 18 0.012 1.8 10.6 0.2 2 23 577 598 576 598 0.93 11 18 0.0032 0.47 12.4 2.1 1 23 604 626 604 626 0.98 12 18 9.4 1.4e+03 1.5 0.3 2 10 632 640 631 650 0.74 13 18 0.00023 0.033 16.0 0.8 1 23 666 688 666 688 0.97 14 18 7.6 1.1e+03 1.8 0.6 2 23 693 714 692 714 0.82 15 18 0.00067 0.096 14.6 1.6 2 23 725 747 724 747 0.96 16 18 0.0047 0.68 11.9 1.8 1 23 753 775 753 775 0.98 17 18 0.00018 0.026 16.3 7.2 2 23 782 803 781 803 0.96 18 18 0.0069 1 11.4 1.7 1 23 809 832 809 832 0.96
Sequence Information
- Coding Sequence
- ATGGAAGATCTACCACCGAATATAAGAACCCAAAAAGACACTAGGAACCTTGAATGGCTGAAAACCAAGTTGGGAACGCTCTGGTCTGACTCCAAGTACTGTGGAATGTGTTTGGAGACTTCATGCAATCTTCACCCTCTGAAAACTGAGTTTGCCATAAATGAATGTTACTCTACAGTGCCACTGAGAGATGTACTGAATATTGTTTTTGATTGTGAGattGAAGACTATATGTCAAGTGAGTTAATTTGCGAAGAATGCACAGAGAAAACTATCCTATCTTACGTCTTCATTCAGAACACAAAGAAAGTCTTCAAAATACTCACGAACTGCGTGAATGACTTGCTATCCAAAACCACAGATCTAACAAACGAGTTAGACGAGAACATTGATTATGAAGATGCAAATGTAATTATTGTTGTCGAATATGACAATGAAACGTATCAAAATATTGATGAAATCACTTCTGGGAATTCAGCTATTCTTACAGAAACACCTATTAAAAGAAGGCAAAGCGAAGAGCCAGTTAAGAACTGCAATGCGAGTCCCAAAAACACAGATGAAGTTGAGAAACCGAAGGTAATaagtaataaagataataaaggaCCTATAATTATACCTACACTAAGGGTTATTAAACATCCGAGAAGCAAAGAACTGCGGACAAGTAAAGTAAATCAAAATGCTGCAATAGATAAAACTCCAACGGTTTCCCTGGAAGGAGGAAAAATTGTTATTGCCCCACTTGTGACGAATACTCCATCTGCTCCAAAATATAACACATACAAATGTAACGCTTGCCCGAGCATATTCACTACCTACCGATCTTTGAAAGAACATGAAAAGTCGCTACATAAAACTACTATTTTCCAATGCAGATTCTGTAGTAAAAAGTACAATTCTCAACAGTATTTAGACGTGCATTACGAAGCTACACATTTGCAAACTAGATGTCGATATTGCAGCGACTTATTCAACAACAACGAATTAAATAACCATCTTAAATCGAACCATGAGAAACAAGTAAATTGCTGCAAATATTGTGACTTAGTATATTATACCGTCGAACAATTAGAGACGCATTGTAAATCAACACATTTCTCTAATATGAAATCGGACAATGATAGTAAAACTTTTTGCATGATGTGCCTTAGAAATTTTAAAGCAGAAGAAATGAAATCACACAAATGTAAATTCTCTTGCCTGGATTGTCCAGTCGTTCCATGCGTGCATTACAGTTATTTAATGTCATTTAGAGAACAAGTTCTGACTCATTTCTCTAAGATTCAATGCCTCGATTGCGACTATACGACTAAAAGAAAAGAGCATCTAATAGCTCATGTTAATAGGGAACATTTGGATTACCATCCGTTTACTTGTGACGACTGCGGAACACAGTTCTACACAAAACTGAGCTTAAAAACGCATATAGTTCAGTTCCATCAAGACATGAGATGCCAGTACTGTGACCACGAGTTTAAAAATGGCAAGTTGCTTGAAAATCATCGAACGTTGTGTAAAACGATAACTAGAGAACATGGCTGTGCAAAATGTGTGTCTTCGTTTGATACGGAACAGGAGTTAAGCAAGCATGTAAGGCAAAGTCACAGCGATATTGTATTTCCTTGTACGCTTTGTAAAAGAGAGTTTACCAATGAACTAGCTCTTGAAGAACATCATGCGAGAGTTCATAGCGGGATCCAGTATAAGAAACGAAGAAAATTCATCGAATGTACTCTGTGTGATATcacgttcaaaaatataaaagaaatgcTAAAACATGAAGAGTTACACGATACGAATGAAGTTTACCCGTGCAAAGTCTGTTCGAAGACTTTTAACAGCCTTAAAAAAGTGTATGTTCATAAGCAAAGACATTATTCGCAACGAACTAAATGTCCAGGTTGTAAGAAGCTCTTAGCATCTTCTTACTTTACTCAACATAAAGCTGTCTGTCTTTATTTGAAAGGATCACGTAATCCACGTAATCCACCCTACAACTGTGATATTTGTACTGAAACTTTTAATTCGGAAACAAAGCTCCAATTGCATTTACAGAACCACTCTAAGACTATTCCATGCGAAATCTGCCATAAATTAATCAAGCCTGGCATGATGAAAAGACATTTAGAACAGAAGCACTTAAACGATTCCGAGCAACAAAAGATATTAAAGTGTGAATTCTGTGATTACACAACGAAGAAGAAGTATGACTTTGAAAatcacataaataaaatacatttgaaaATTAAACCTTATATCTGCCATGTATGCAGTAAAGCATTTTGTGGGAAAGCACGATTGGACGAACATGAAAGAATACATTCCGATAATAATGTGTGTTACTGTAATTACTGCGGCAAGAAATTTGCGAACAAAGTGTGTTTAAAAATGCATACAAGACGTCATACGGGTGAGAAACCCTATCAATGCAACATTTGTTTAGAAAGCTTCCGATCGTCGAGTATTATGAAGACTCACAGACTTAAGAAACACCAAGATAAGACGATACAGTGTCCGTTATGTGATTCTATGTACCACTTAGCTGCTGAAATGAGGTTTCACGTTAAAAAGGTTCATTGGAAAAGACCTACACCGTTTGATTACAAGCAAATTGTACCGGAGAAGTTTCATCATTTGTTTCAAGACCGACGATTGCAGAAGTTAGGCGAAGATGTGCAGATAAATAGATTGGAAACGTGA
- Protein Sequence
- MEDLPPNIRTQKDTRNLEWLKTKLGTLWSDSKYCGMCLETSCNLHPLKTEFAINECYSTVPLRDVLNIVFDCEIEDYMSSELICEECTEKTILSYVFIQNTKKVFKILTNCVNDLLSKTTDLTNELDENIDYEDANVIIVVEYDNETYQNIDEITSGNSAILTETPIKRRQSEEPVKNCNASPKNTDEVEKPKVISNKDNKGPIIIPTLRVIKHPRSKELRTSKVNQNAAIDKTPTVSLEGGKIVIAPLVTNTPSAPKYNTYKCNACPSIFTTYRSLKEHEKSLHKTTIFQCRFCSKKYNSQQYLDVHYEATHLQTRCRYCSDLFNNNELNNHLKSNHEKQVNCCKYCDLVYYTVEQLETHCKSTHFSNMKSDNDSKTFCMMCLRNFKAEEMKSHKCKFSCLDCPVVPCVHYSYLMSFREQVLTHFSKIQCLDCDYTTKRKEHLIAHVNREHLDYHPFTCDDCGTQFYTKLSLKTHIVQFHQDMRCQYCDHEFKNGKLLENHRTLCKTITREHGCAKCVSSFDTEQELSKHVRQSHSDIVFPCTLCKREFTNELALEEHHARVHSGIQYKKRRKFIECTLCDITFKNIKEMLKHEELHDTNEVYPCKVCSKTFNSLKKVYVHKQRHYSQRTKCPGCKKLLASSYFTQHKAVCLYLKGSRNPRNPPYNCDICTETFNSETKLQLHLQNHSKTIPCEICHKLIKPGMMKRHLEQKHLNDSEQQKILKCEFCDYTTKKKYDFENHINKIHLKIKPYICHVCSKAFCGKARLDEHERIHSDNNVCYCNYCGKKFANKVCLKMHTRRHTGEKPYQCNICLESFRSSSIMKTHRLKKHQDKTIQCPLCDSMYHLAAEMRFHVKKVHWKRPTPFDYKQIVPEKFHHLFQDRRLQKLGEDVQINRLET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -