Cpus038579.1
Basic Information
- Insect
- Cabera pusaria
- Gene Symbol
- pol
- Assembly
- GCA_954871355.1
- Location
- OX940910.1:3099924-3154196[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.27 39 6.4 0.6 1 23 999 1021 999 1021 0.96 2 9 1.9e-05 0.0027 19.5 2.2 1 23 1034 1056 1034 1056 0.98 3 9 0.0011 0.16 13.9 4.6 1 23 1062 1084 1062 1084 0.98 4 9 3.3e-05 0.0048 18.7 1.9 1 23 1091 1113 1091 1113 0.98 5 9 2.9e-05 0.0041 18.9 1.4 1 23 1129 1152 1129 1152 0.96 6 9 9.5e-05 0.014 17.2 5.1 1 23 1158 1181 1158 1181 0.95 7 9 7.8e-05 0.011 17.5 1.1 2 23 1188 1209 1187 1209 0.97 8 9 0.00035 0.05 15.5 4.2 1 23 1215 1237 1215 1237 0.96 9 9 0.00065 0.094 14.6 0.2 1 22 1243 1264 1243 1264 0.97
Sequence Information
- Coding Sequence
- ATGCCATTTGGCCTCAAAAATGCACCAGCCACTTTCCAAAGATTAATGAATACTGCACTCTCCGGTCTTCAAGGTATCCAATGctttgtgtaccttgatgacattgtAATTTATTCATACGACCTTGATACGCACATGAAAAACTTATCCAACGTTTTCAATAGACTCCGAAGTTTCAATCTCAAACTACAACCTGACAAATGCGAATTCCTCCGCAAGGAAGTCTCGTATCTTGGCCATATAATTACCGACCAAGGTGTTAGACCAAACCCTGAGAAAACCAAGGCTGTAGAAAAATTTCCCGTTCCCAAATGTCCGAAAGACATTAAATCTTTCTTAGGATTAGTGTCGTACTACCGGCGCTTTATTCCAGACCTATCTAAAATTGCTAAACCACTCACACATCTATTAAAGAAAGATATCCCCTTCATTTGGAACAACGAGCAGCAATTAGCTTTTGAAAATCTCAAAAGTGCCCTGATATCAGCACCAATTTTGGCGTACCCGGATTTTACAAAACCGTTTGTTCTGTCATGTGATGCATCAAACTATGCCATATCTGCGATTTTGTCCCAGGGGCCTATAGGAAATGACCGGCCTATCGCTTACGCATCCCGAACTTTAAATAAGGCGGAAAGTAATTATAGTGTAACTGAAAAGGAATGCTTGGCCATcatttttggtacaaaaatgttTAGGCCGTATATATATGGCCTCAAATTTACAATCGCTACCGATCACCGTCCTCTTAAGTGGCTATTTAACTGTAAAGAACCGGGGTCAAAATTAGTCAGATGGAGACTCAAACTAGAAGAGTATGACTACgaggtaatttacaaaaaaggaaacGTTAACAGCAACGCTGACACATTGTCACGTTACCCAGTCAATCCAATCATTCAAGAGAATGTAGACCCACAACCTTCAACGTCAGGATTATCCGATAACCAACCCACTTTTGACTCAGAAATTCCTGAAGACATTCTTGACGATTTAATCGACTTGGGCGACTTGGGAATTAGCCCACTTAAGCAAAACATTGACTTTTCCCCACTGAATCCTCCGTCTCCCGAGATCACTCTCACTCCACCAGCCCCTATTCCTGCTCTTAATCCTTCTTTTTCGCCAGACTTTCGCACTAACGAAACCAGACAAATTGATGCAACGCCTTCCAGTTCTAATAAAGAATATACCGAATTTCTAAAATCTTTTACGAGCAAAAACGAAACATACAacacatttatcaaaaaacataATGAAAGTCTATTTAAAAGTAATGCTAAGACAATATTAATCCCCGTGTCCATAGACTTTGACGACTCAAACCCATACCTTCAAGACATTATCTCCAACGCTGATGACACAATTCACGATGGCGAACGCGAACTGCACTCTTTTAAGAAAgttaatataaaaggcaaaacctACTATCTCCTCTTTACCAAGGTCTATTATTTCGACACCTGCTCCTACCCTGACATCTTCAAGACGCTAAAGTCAGCCAGAGACGATATTCTTCTAACCGGCAACATAAATGAAATAGCAATATCTGACTTTAAAAATGCATTCGAACAGAATTCCTTTGTCAAAATCTATGGCATGCTCATGTATCTATTTAATAACACTAATAACACACTGCCTAGCAGCAGAAAACTGCAAGAAATTCTTGCAGATATCCTGGAGAAAGAATTGGAAGAAAGCACCGCACACTCTAAAGCACTCTGCAGGAAATGTTACAAAACCTGCATTGATTTTGATGCACTTAAATCAAAgATGAACGTAATAAAACTAGACATGGGCATCGAATACTCGGCCACTTTACAGAAACAAAGTAAATACGAAGAGAAAGTTGTACAAGACAGTAGAAGAAAGGTGGTGGTACCAGCTTCGAAGCTACAACCGGTGCCGCCCGACTTTCAACTCAATTTGACACAGTTACCCCACTTTGGACAAGTCGCCAAACCTAATAATACCAAGCAATCGTCTGTAATAAATCTAAAGGTGACAATCGGTTCCTCAGTGTTCACACAGAGCCTAAACGCGTCCACTGTGAAGATATGCAAAACTTTAGACACGGCGGATACACAAAACATCATACCTAGTATCAAAACTGAAGATTTAACCGAATGGAATGTCAATATATTGCCTAAGgATATATTTTCGACAACCAACGAAGAGACAAGTCAAAATGACGAAGAGACAAGTCAACACGACGATGTTAGTCATCATGAAGATGGCAACAGTCAAGATGGTTCCGATGACAGTGCAGTTGATGCGGTCAATTCTGAGTACGGTGATGAAAATGCGGAAAAGGATGATGAAAATGAAATGGAGATAGATGAAGacTGCAGCTTGGCCATGGTACCAGTTTCCACAGACAGTCAACCGATAACATTCGATATGTCGCAAATAAAGTCAGAACCCAATAGCGAGGAGACGCAGTACATAAACGTGAACCTACTTGACTCGGAGGGTGGTGCGGCCGGGGAGTACGTGCTCAGTAACCTCAAGTTGTACAACGATGATAACGGTGATGATGAACAACATACAATAGTGGTGGACGATGAAAACGGGTCCCTTTTGAAAATGGTGTCCGGACAGAAGCTTATTTACGAGAATGGAGAACTGTCGCTCGTGATGGAAGACGATGGTGATGAAggcaatgatgatgatgatgacggtggTAACGatTCAAACGACGAGTCGCAAATTGAGTTGCAAGTGTCGGGAGATGAAGAAACTGCCAACGCGATTATAGCGGCCGCGCAGGAAAAAGGAGGTGCATTCATAAAAGTGTCATCAGGAGAGATGTATCGCGTGAACTCAGTGGAGAGCAAACCTCAGGACAGCTTCGATATATCCGCGTTCGTGGTCAGCCAGGGGGACGGATACTGCTGTGTGCTGTGCAAGGGACGGGACGaCGACTCCCCTCAAGAGCAATTCGACGCCAGTTCAATGATGAGTCACTTGAAGTCGATGCACGACGCCAAGGTGTACATCTGTCAGTTGTGTGGCCTGGGGATGCGGAAACGTCACGACTATACACAACATATAGCGGAACACTCAAAAAGCCTAACAACGCCAACGCACAAAAAACCCCACACTTGTCCAATGTGCAACAAATCTTACAACTCCCGAACGTTGCTGCAACAACATCTAAACGTACACAAAGGTGTCCGACCCTACTCCTGTCACCTCTGCGACAAGGCCTTTGCTAACAAGTACACTCATCAGGCGCATCTCAAGACTCACCAGaCCCGACCACGGCCGTACAAATGCAAGCAGTGCGGGAAATCGTTCCTCTCACAACAGAATTTAACTCAGCATGAGAAAATACACACCGGGATCAAGGACTTCGTTTGTAAAATTTGCAGTGAGCGTCCATTCGAGTGCGAGACGTGCGGCGCGCGGTTCGCGCAGCGCTCCAACCTGCACTCGCACCGGCGCGCCACGCACATGGACGACAAGCGGCACCAGTGCACCGACTGTCACAAGCGGTTCAAGCGGAGACGCCTACTAGAATACCACATAAAGGCGGTGCACACAGGCGAGCGGCCGCTGCAGTGCGACATATGTCAGTCCACGTTCGTGTACCCCGAGCATTACAAGAAGCACATCCGGATACACAGCGGGGAGCGCCCGCACTTCTGTGAGATCTGCGGCAAGTCGTTCAACTCGCGCGACAACCGCAACACGCACCGGTTCACGCACAGCGAGAAGAAGCCCTACGAGTGTCTCACCTGCGGGCACTCTTACATGCGCAAACAGGCGCTCATAGCGCATATGAACACCACCGGAGTAACAACTATAGTACAATTGGATCCAACCAAAGTGTCCCAGACAAATAATGATAAAACTACTGAGTCTATTctgTCCCCAACGTCCGACAGTTTCGAGCTACTGACAGAAAATAATTCACTGGATAATGTAAAAGATGCAACTCCCAAACTGTACCTTAGTGATAATTACCTGGACGCTGACGACACAGCGTTAATGAAAGCTGTGAGTTCTGCACAACTGGACCCGAGCAACGCGCAGGTAGTTACACTCACACGTGTTGTATAG
- Protein Sequence
- MPFGLKNAPATFQRLMNTALSGLQGIQCFVYLDDIVIYSYDLDTHMKNLSNVFNRLRSFNLKLQPDKCEFLRKEVSYLGHIITDQGVRPNPEKTKAVEKFPVPKCPKDIKSFLGLVSYYRRFIPDLSKIAKPLTHLLKKDIPFIWNNEQQLAFENLKSALISAPILAYPDFTKPFVLSCDASNYAISAILSQGPIGNDRPIAYASRTLNKAESNYSVTEKECLAIIFGTKMFRPYIYGLKFTIATDHRPLKWLFNCKEPGSKLVRWRLKLEEYDYEVIYKKGNVNSNADTLSRYPVNPIIQENVDPQPSTSGLSDNQPTFDSEIPEDILDDLIDLGDLGISPLKQNIDFSPLNPPSPEITLTPPAPIPALNPSFSPDFRTNETRQIDATPSSSNKEYTEFLKSFTSKNETYNTFIKKHNESLFKSNAKTILIPVSIDFDDSNPYLQDIISNADDTIHDGERELHSFKKVNIKGKTYYLLFTKVYYFDTCSYPDIFKTLKSARDDILLTGNINEIAISDFKNAFEQNSFVKIYGMLMYLFNNTNNTLPSSRKLQEILADILEKELEESTAHSKALCRKCYKTCIDFDALKSKMNVIKLDMGIEYSATLQKQSKYEEKVVQDSRRKVVVPASKLQPVPPDFQLNLTQLPHFGQVAKPNNTKQSSVINLKVTIGSSVFTQSLNASTVKICKTLDTADTQNIIPSIKTEDLTEWNVNILPKDIFSTTNEETSQNDEETSQHDDVSHHEDGNSQDGSDDSAVDAVNSEYGDENAEKDDENEMEIDEDCSLAMVPVSTDSQPITFDMSQIKSEPNSEETQYINVNLLDSEGGAAGEYVLSNLKLYNDDNGDDEQHTIVVDDENGSLLKMVSGQKLIYENGELSLVMEDDGDEGNDDDDDGGNDSNDESQIELQVSGDEETANAIIAAAQEKGGAFIKVSSGEMYRVNSVESKPQDSFDISAFVVSQGDGYCCVLCKGRDDDSPQEQFDASSMMSHLKSMHDAKVYICQLCGLGMRKRHDYTQHIAEHSKSLTTPTHKKPHTCPMCNKSYNSRTLLQQHLNVHKGVRPYSCHLCDKAFANKYTHQAHLKTHQTRPRPYKCKQCGKSFLSQQNLTQHEKIHTGIKDFVCKICSERPFECETCGARFAQRSNLHSHRRATHMDDKRHQCTDCHKRFKRRRLLEYHIKAVHTGERPLQCDICQSTFVYPEHYKKHIRIHSGERPHFCEICGKSFNSRDNRNTHRFTHSEKKPYECLTCGHSYMRKQALIAHMNTTGVTTIVQLDPTKVSQTNNDKTTESILSPTSDSFELLTENNSLDNVKDATPKLYLSDNYLDADDTALMKAVSSAQLDPSNAQVVTLTRVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -