Basic Information

Insect: Cabera pusaria
Gene Symbol: -
Assembly: GCA_954871355.1
Location: OX940897.1:5014324-5032330[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.2 1.7e+02 4.3 0.1 2 23 110 131 109 131 0.95

2 16 0.002 0.29 13.1 0.9 2 23 135 157 134 157 0.93

3 16 0.17 25 7.0 0.4 2 23 437 458 436 458 0.94

4 16 0.018 2.6 10.1 0.3 1 23 506 529 506 529 0.91

5 16 1.4 2e+02 4.1 0.2 2 23 538 560 537 560 0.94

6 16 9.9 1.4e+03 1.4 1.8 8 23 576 592 567 592 0.87

7 16 0.044 6.3 8.9 0.1 2 23 603 625 602 625 0.92

8 16 0.00059 0.085 14.7 4.3 1 23 659 681 659 681 0.96

9 16 1.1e-05 0.0016 20.2 0.7 1 23 688 710 688 710 0.97

10 16 9e-05 0.013 17.3 2.3 1 23 715 737 715 737 0.96

11 16 0.00021 0.031 16.1 3.4 1 23 743 765 743 765 0.99

12 16 9.2e-07 0.00013 23.6 0.8 1 23 771 793 771 793 0.99

13 16 7.2e-05 0.01 17.6 1.6 2 23 800 821 800 821 0.98

14 16 0.0028 0.41 12.6 0.2 2 23 831 853 830 853 0.96

15 16 0.0022 0.31 13.0 0.3 1 23 858 880 858 880 0.99

16 16 0.013 1.9 10.5 3.6 1 23 886 909 886 910 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.2	1.7e+02	4.3	0.1	2	23	110	131	109	131	0.95
2	16	0.002	0.29	13.1	0.9	2	23	135	157	134	157	0.93
3	16	0.17	25	7.0	0.4	2	23	437	458	436	458	0.94
4	16	0.018	2.6	10.1	0.3	1	23	506	529	506	529	0.91
5	16	1.4	2e+02	4.1	0.2	2	23	538	560	537	560	0.94
6	16	9.9	1.4e+03	1.4	1.8	8	23	576	592	567	592	0.87
7	16	0.044	6.3	8.9	0.1	2	23	603	625	602	625	0.92
8	16	0.00059	0.085	14.7	4.3	1	23	659	681	659	681	0.96
9	16	1.1e-05	0.0016	20.2	0.7	1	23	688	710	688	710	0.97
10	16	9e-05	0.013	17.3	2.3	1	23	715	737	715	737	0.96
11	16	0.00021	0.031	16.1	3.4	1	23	743	765	743	765	0.99
12	16	9.2e-07	0.00013	23.6	0.8	1	23	771	793	771	793	0.99
13	16	7.2e-05	0.01	17.6	1.6	2	23	800	821	800	821	0.98
14	16	0.0028	0.41	12.6	0.2	2	23	831	853	830	853	0.96
15	16	0.0022	0.31	13.0	0.3	1	23	858	880	858	880	0.99
16	16	0.013	1.9	10.5	3.6	1	23	886	909	886	910	0.95

Sequence Information

Coding Sequence: ATGTCTTCAGAAGAATCTGACGATGAACCTCTGTCCGTCCTAGCGTCGAAGAAACAAGAAGCGGAAAATGCGGAACTTGAAATATTACCAATTTATGCATCAGAAGTTAAGTCGACAAAGTCGAAAAATCTCAAGAAAGAATGTGATGTTTCTATTAGTCTTCAGCCTTCGCTAAATGAGCAGAGTGTTGTCGAAAGGCCTACAGATGTGTGGTTGTACCTTACAGATTTAAACACTTGCGGGCCTTTTAGTTGCCTGTTATGTTCCGAGTGGTTTTTAAACAAAGCACGGATTGTTATTCACTATGTAGTCGATCATAGAAAAGATTACTGTGGTATTTGCAGATACTTTGTACCAAATAGAGAAGCTTGGTGGGAACATCTGAAATTCCATACACCATGGAAGTGTTCCCAATGTACTGAAAGCTTTGATACTGAAAAAGAATTACGGCAACATTTTAGCAGTATTCATAATTTGGTCCACTGCCGACTCTGTTACTTGCGACTACCAGACAATGAAGAGTATCATAATCACCTGTTCCAGAAACATGGAACAAGTGATATATCAGGAATAAGAGGAGATTCCTTCTGGGAGTTCCAATATCCAGCCCAAAAGTTCTTCTGTCTACTCTGTCTGAAAAAGTTTGACTTAGGCAAACAATTTTCTGACCATTTCATAGCCTTTCATCATTTTACCCTCAAATGTCTAACATTCTTGATATGTGGGACTGATCTTCAGTTTAACATCAAAGGTGTGGATCTATCCCAGGAATTTATTGAAACCGAGCTGAAATTGTATAGCAGTTATGGTTATGTTGATTTCCAAAAGTGTTTAAAAATCAAAGATGAAATGGAGACTGAGGAGGTTTCTATAACGGTTGATTGTGACCCTGGTATCAAAGAGGTGGTAGAAGACAGCCACAGCGATGATAATTTGAAGCTTGTTGATGGTGTTGCTGGTTATAGAGGTGATGTTGACTTTGATGTCACTTTGATAGAGTTAATCCTATTGCCTAAATGTTATCACGATTATGTCAGTGATATCTTGAAGAAAATCGACTCTAAAGTAATGCCACACTCAACAGAAGTTTCCTATTTAAATCCCGGAGGTAGCACAGCATGTGTGAACTGCTTTCTTTGTAAAGATCTCTGTAAAACCGTGACTGCGTTTGAAAGCCATATGTCGAGGGCTCATTCTGTCAAAACTCTCCCATTGTTCTGGTGTAGAGTATGTGCTGCAGATTTTGAAAATGGCACGGAACTGGAGAACCATTCGAAAGAGGAACTGGCAGAGTTTGAAGATTTGTGGATCTGCCAGTTTTGTGAGAAGGAATTTGATGGCCGAGAAGAGACTAGAAAACATTTGACGGAGCATTTTAGCATTATAGATTATGACAATTGCTTCAGCCCACATTTAGGGTTTAAATGCAAGTATTGCCCCACACTGTTTTGGAATGAGACTGATCGGGAGATGCATCACATTAGAGTACATATACAGAGACATAAGAATGACTTTTATCCATGTTTGCTTTGTGGAGAAGTATTCAGTGATAAGATATTCTTCGTTTACCACTATATAGAGAAACATGGCACCAAAACTACACACCTCCTGAGATGCCGTCTTTGTGGTGTAATGTTggaaaacattgatgaaatgagGAGTCACTTTAAATCGGACCATCCACTGTCCAGGCGAATATTCTGTTGTATGGATGCCTGCAAGTTCAGACCTTTTCAACATAGAAAGGCTCTACTTTTGCATATGAAgTCGATTCACGACCCGGCAAGCAAGTCGACACGTTCAACGACATGCTCCGTGTGTGGACAACAGTTTGCCAGCAATAAAGCGCGCGCTGCACATACGCTGCAGGCGCACGGACTCGCCAAGTTCAAGTGTACGTTGTGTGCTGTCGTGCTTCTCACTGCGGATGAGAGAAAGTTCCACTACCTGATCCGTCACCCGGGCCGCTACCAGTACCAGTGTGACATGTGTGACAAATCGTTCCAGTATAAATCGTCCTTGTACATGCATAAACATGAACATTCTCCTCACAAGAAGGACTACGCTTGTAATTATTGTGGGAAGGTGTTTATGAAAAAAGACTCGTTCCGTGAGCACGTTCAAATCCACGAAGCGCCCCGACACGCATGCTCGTATTGCCCCATGCGGTTCGTGCAACGATCAAACATGTTGCGACATGAACGGCGGCACACAGGGGAAAGACCTTATTCCTGCAATTACTGCCCTAGAACCTTTTCTGATAAAGGTGCCTGTACTTCGCATACTAGGACACATGTGAATAACACATCGTATGTATGCGTTTACTGCGGGCAAGCTTTCGCACAGAAATCGAAGTTGAAATATCACATCAGAAAGCATACGGGTGAAAATTTGGAGACGTGTCAGATATGTGCGAAGAAGTTTACGAGCGCGTGCGCGCTGCGTGAACATATGCGAGTGCATCAGAAGCAGAACATGAAGAAAACTGTCAAATGTCCTTTATGCAAGAACATGTACCCGACAGAGAAGGACATGATCCGACACATGCGGGGCACGCACACCGGCGCGCGGTACAAGTGTCCGCTGTGCAGGAAGCTGGTCAGTTCTACGGGCTCGCTGCGGGATCATGTGCTCACACATACCAGGGTTAAGGCTTTTAGGTGCAAAAGCTGTCCAAAGACCTATAACTCGAGAAAGACCATAATAAAACACCTGCTACTGCGTCATCACGTAAAACGCTCAGAAGTAAATAGCCATTACCACCATCTGGATCCAAAAGAATGCAACATTGACTTAAACGACGACATTATGAAGAAACTATTCAGCAACTTGAAACGTAAACCAAATGctaatttatttaaagaatTCTTAGCCACGAATAAAGATATTATTGAATCAAAGAAAGAAATGGTGAAAGCAACTAAAAGATCCACGAGAAAGAAGCAAGAAAATGTAGATGGACAAGAAAATGTAGATGGACAAGAAAATGTAGATAGTCCAGAAAATGCAGATAGCCAAGAGAATCCGAATGCGTTTGTGAATGTTATAGAAGAGGTTTCAGTGAAATTAGAACCTTGTAACTATAGTGATAATAGCGAAGATGAAATTCCGCCGTCTGATTTTGTTAATGTCAAGATTGAGTGTGTTgaagaaaataaaattgaagcagAATAA
Protein Sequence: MSSEESDDEPLSVLASKKQEAENAELEILPIYASEVKSTKSKNLKKECDVSISLQPSLNEQSVVERPTDVWLYLTDLNTCGPFSCLLCSEWFLNKARIVIHYVVDHRKDYCGICRYFVPNREAWWEHLKFHTPWKCSQCTESFDTEKELRQHFSSIHNLVHCRLCYLRLPDNEEYHNHLFQKHGTSDISGIRGDSFWEFQYPAQKFFCLLCLKKFDLGKQFSDHFIAFHHFTLKCLTFLICGTDLQFNIKGVDLSQEFIETELKLYSSYGYVDFQKCLKIKDEMETEEVSITVDCDPGIKEVVEDSHSDDNLKLVDGVAGYRGDVDFDVTLIELILLPKCYHDYVSDILKKIDSKVMPHSTEVSYLNPGGSTACVNCFLCKDLCKTVTAFESHMSRAHSVKTLPLFWCRVCAADFENGTELENHSKEELAEFEDLWICQFCEKEFDGREETRKHLTEHFSIIDYDNCFSPHLGFKCKYCPTLFWNETDREMHHIRVHIQRHKNDFYPCLLCGEVFSDKIFFVYHYIEKHGTKTTHLLRCRLCGVMLENIDEMRSHFKSDHPLSRRIFCCMDACKFRPFQHRKALLLHMKSIHDPASKSTRSTTCSVCGQQFASNKARAAHTLQAHGLAKFKCTLCAVVLLTADERKFHYLIRHPGRYQYQCDMCDKSFQYKSSLYMHKHEHSPHKKDYACNYCGKVFMKKDSFREHVQIHEAPRHACSYCPMRFVQRSNMLRHERRHTGERPYSCNYCPRTFSDKGACTSHTRTHVNNTSYVCVYCGQAFAQKSKLKYHIRKHTGENLETCQICAKKFTSACALREHMRVHQKQNMKKTVKCPLCKNMYPTEKDMIRHMRGTHTGARYKCPLCRKLVSSTGSLRDHVLTHTRVKAFRCKSCPKTYNSRKTIIKHLLLRHHVKRSEVNSHYHHLDPKECNIDLNDDIMKKLFSNLKRKPNANLFKEFLATNKDIIESKKEMVKATKRSTRKKQENVDGQENVDGQENVDSPENADSQENPNAFVNVIEEVSVKLEPCNYSDNSEDEIPPSDFVNVKIECVEENKIEAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -