Cpus041144.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cabera pusaria
Gene Symbol
gfi1b
Assembly
GCA_954871355.1
Location
OX940912.1:13645651-13668206[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00035 0.05 15.5 1.3 1 23 535 557 535 557 0.97
2 10 0.025 3.6 9.6 1.4 2 23 565 586 564 586 0.96
3 10 0.94 1.4e+02 4.7 3.2 1 23 590 612 590 612 0.98
4 10 0.00049 0.071 15.0 1.0 1 23 617 640 617 640 0.95
5 10 0.00067 0.097 14.6 0.7 1 23 644 667 644 667 0.96
6 10 0.017 2.5 10.1 0.5 2 23 680 702 679 702 0.96
7 10 4.6e-06 0.00066 21.4 2.1 3 23 769 789 768 789 0.99
8 10 7.3e-05 0.011 17.6 0.9 1 23 795 817 795 817 0.97
9 10 2.7e-05 0.0039 19.0 0.4 2 23 823 844 822 844 0.95
10 10 0.00023 0.033 16.0 1.4 1 23 850 873 850 873 0.96

Sequence Information

Coding Sequence
atgtctgcgaggaaggccagcagctcgctgatgccggcACAGGCCTCTCGCATCGTCGTCGGGGACCCGAGGAGTATCCGCTGCTGTGCCGCCACGCTACTGCACTCCAGTAGCGCGGCCGTCTCCTCAGCCTCCATGCATCCTCTGCACAGGGGgctgtcggtgacacctatgGAGAAAACCCCACTCGACCGTATCTACACAGTGCTTCCAACAACAACTTTCGGAATATGGATGTCCGCTGACAACAAAACTACAGAGTTTTCATATTCTCATGAGCGAGGAGCATGGACAAATGCCTCAACTGTACCTATTCACTACACAGATGACACAGAAATAACACAAACACCGCTTTTAGAAATGATTATAGAATCTGCACCTGTAAATACTGTAAATCCTAtggaagaaaataaaatatctaaaccaGTTAAAAATAAGGCTAAACGAAAAACTGTATCAAATGGGAAAGAACATATTCAAAGcaaaagtaagAAATCGTTAGAAACTCTTTCTAATAccaaaataaaagaagaaatggATGGAGAAGCAGTTATATTAAATCTACTCGGCCAAGATATCAACGAAGAccttatattaaaaacagaagaAAATTGTCTTACATTTGAAGAGATAACAGTTGAAACTgtgaataagtttaaaaacgaaactaCGCAATTCCTCAATGAAGATTCACCAAATGATATCAACGTAGATGACGAAAATGACAATGACAACAATTTAGATGACTTATGCGTTAAGGATGATCGAGATGACCTTAGTGTGACTAGCAATGATATTGATGAAATAAATGATGCTTTAGAAGATTCTAGTGACAGTGATTACACTGAACATTCGGGAAAGAAGAAACGGAAAACACTAGCTGACTTAGTCAGAGAATCACAGAAACGTAACGATTCTAAACAAGATGATTTTAAAGACAAACATTCTAGAAATAATTTTCATCTAGATGACTTGAACGATGGAATTAAAAATGAAACTATCAACGGTGAATGTTTACTCAGAAATGATACAATAGAGAAATTGAAATCGTTTAATAGAGATCTAgacaatatatacaaaaaaagcgAACACATTTTacctaaaaacaaaaagaaaactttGAAGAGAAATGTTTCGAAGAATGTTAAAAGACATTTGGCTACAAAGGGTGAAGTGGTTAGAGTAAAGAATATTTCTAAAGGCCTCGATAGTTTATGTGAGGAAAATGAGAATTTATTACTAAGAATTAAATCTGGGCTACCTTTTAGCAGAGAGAAattaaaagcagagataatatctatatttaaaagTTGTGGTGAACTGAAAGACAAGGGGCGTCCAATAGACAAAAACTTTATCATAAGTTGTCTGCAAGAAGACAAAGTTTCTGAAGACCTGTGGAGGCTTCTGTGGAGGAATGTACACgGTAGAAAAAAAGTGCTAAAACCAAAAGCGATTCATGTATTCTACTGGATACAGAAAAAGTACCAGAAAATTTCTGACTACGAATCTATGTTTGACATCGAGTATTTAAATACGCCAGAGAAGATTCTGGAAGAATTCCAGAGACGGAAAACCTACGAATGCTTCTTGAGGGCCAACTTCAGATGTGAAGTTTGCTACCAAGTATTTCAGTATAAGAAACTACTCACCAATCATATGGAATTGCACGATATGACAGGGGGCGAGTTGACGTGCCCTATCTGCAAGTTACGACAAAAGAGTCGGAAAAGTCTGAACAACCACCGACGCGCTCACGAGGTCATATATAAGTGCCGCCTGTGTCCTCTCGTCACACATTACAGGACGTCTATGATGAACCACTACAACCAACACAAAGGTGTGGAGTACAGATGTGAGACGTGCAATACTTCGTACAGgagTTCGTCGGCGTACGCGACTCATTTGACATATATACACGGGCGCAAGCATTCGTGTACCATCTGCGGCGACGCATTTATTACTGAAGAGAAACTAAAAACGCACATACAGAAGTTACACCAGGACGAGCCGCCGCCAGACAGTGAGGTGTGTGTCCAATGTCCTCAGTGCGATCTGACGTTCCCGTCTACAGAAGCTTGTCAGAAGCACGCTCGAGTGTCACACAAGCTACCACCTAAATCTGTCAAACGTACCACGCCCGCCACCGTTAAGAAGTCAGGATTGACACCAAAAAGAGCACCTACCATACCTTGTCGAGTGTGTGCGGCTGAAGGAAGCTACGGCTGGCTCACTCTACACTTCAAAACGGATCATCCCACTGTGGATATGAAGTTGTTATATTCAGACAAACAGAACAATCTGTGTCATATATGCGGCAAGGGGTTCACTACGATATACAATCTTCGCACTCATTTGAACAAGCATTCCGGCTCGAGGCCGTACCCCTGCCCGTCGTGTCCGAAGTCTTTCTGCAGCTCCATGTCGTTGGCTTCCCATCGTCTGCTGCATCAGCCCAGGAGTCTGCCGTGCTCGGTGTGCGGGAAACTGTTTCGGTCCAGGGCTAACTTGTACAGCCATATGCAGTTCCACATTGGGGATCGCCGCTACAAGTGCAACATATGTACGAAGGCGTTTTTACATCGCAGCACTTTGACAGAGCACGTTCGTGGCGTCCACCTCAACCAGAGGAGATCTAGGCCGCGTACCAATATCGCTGATATtgaataa
Protein Sequence
MSARKASSSLMPAQASRIVVGDPRSIRCCAATLLHSSSAAVSSASMHPLHRGLSVTPMEKTPLDRIYTVLPTTTFGIWMSADNKTTEFSYSHERGAWTNASTVPIHYTDDTEITQTPLLEMIIESAPVNTVNPMEENKISKPVKNKAKRKTVSNGKEHIQSKSKKSLETLSNTKIKEEMDGEAVILNLLGQDINEDLILKTEENCLTFEEITVETVNKFKNETTQFLNEDSPNDINVDDENDNDNNLDDLCVKDDRDDLSVTSNDIDEINDALEDSSDSDYTEHSGKKKRKTLADLVRESQKRNDSKQDDFKDKHSRNNFHLDDLNDGIKNETINGECLLRNDTIEKLKSFNRDLDNIYKKSEHILPKNKKKTLKRNVSKNVKRHLATKGEVVRVKNISKGLDSLCEENENLLLRIKSGLPFSREKLKAEIISIFKSCGELKDKGRPIDKNFIISCLQEDKVSEDLWRLLWRNVHGRKKVLKPKAIHVFYWIQKKYQKISDYESMFDIEYLNTPEKILEEFQRRKTYECFLRANFRCEVCYQVFQYKKLLTNHMELHDMTGGELTCPICKLRQKSRKSLNNHRRAHEVIYKCRLCPLVTHYRTSMMNHYNQHKGVEYRCETCNTSYRSSSAYATHLTYIHGRKHSCTICGDAFITEEKLKTHIQKLHQDEPPPDSEVCVQCPQCDLTFPSTEACQKHARVSHKLPPKSVKRTTPATVKKSGLTPKRAPTIPCRVCAAEGSYGWLTLHFKTDHPTVDMKLLYSDKQNNLCHICGKGFTTIYNLRTHLNKHSGSRPYPCPSCPKSFCSSMSLASHRLLHQPRSLPCSVCGKLFRSRANLYSHMQFHIGDRRYKCNICTKAFLHRSTLTEHVRGVHLNQRRSRPRTNIADIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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