Basic Information

Insect: Cabera pusaria
Gene Symbol: -
Assembly: GCA_954871355.1
Location: OX940885.1:31800983-31820978[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00038 0.056 15.3 5.6 1 23 169 191 169 191 0.99

2 11 3.2e-05 0.0047 18.7 3.8 1 23 197 219 197 219 0.98

3 11 0.00022 0.032 16.1 2.1 3 23 227 248 225 248 0.94

4 11 0.032 4.7 9.3 3.3 1 21 254 274 254 276 0.95

5 11 0.00011 0.016 17.0 2.7 1 23 282 304 282 304 0.99

6 11 2.4e-05 0.0034 19.1 3.0 1 23 310 332 310 332 0.98

7 11 0.0049 0.71 11.8 0.5 1 23 340 363 340 363 0.96

8 11 0.015 2.2 10.3 5.0 2 23 370 391 369 391 0.96

9 11 0.0035 0.51 12.3 2.2 1 23 397 419 397 419 0.99

10 11 8.1e-06 0.0012 20.6 2.3 1 23 425 448 425 448 0.96

11 11 4.7e-06 0.00068 21.3 4.2 1 23 462 484 462 484 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00038	0.056	15.3	5.6	1	23	169	191	169	191	0.99
2	11	3.2e-05	0.0047	18.7	3.8	1	23	197	219	197	219	0.98
3	11	0.00022	0.032	16.1	2.1	3	23	227	248	225	248	0.94
4	11	0.032	4.7	9.3	3.3	1	21	254	274	254	276	0.95
5	11	0.00011	0.016	17.0	2.7	1	23	282	304	282	304	0.99
6	11	2.4e-05	0.0034	19.1	3.0	1	23	310	332	310	332	0.98
7	11	0.0049	0.71	11.8	0.5	1	23	340	363	340	363	0.96
8	11	0.015	2.2	10.3	5.0	2	23	370	391	369	391	0.96
9	11	0.0035	0.51	12.3	2.2	1	23	397	419	397	419	0.99
10	11	8.1e-06	0.0012	20.6	2.3	1	23	425	448	425	448	0.96
11	11	4.7e-06	0.00068	21.3	4.2	1	23	462	484	462	484	0.97

Sequence Information

Coding Sequence: ATGCCCCCCAAAAAGAAATCTTATCGTAACAACAAAACTATCATCGTGCAGGCTGTCATACCTGAGGAGCCTGaaacagaaaatgtgGAAGAAGAGATAGACACAAACGAGGTGACATACTTCGTAGATGAAGAAGGACGGTACTACTACCAGCCCGGGCCAGACCCCGGGTTGGTTTCTCTCGCAGCATCCGAAGATAATACAATAGTACAACAGGAAGAAGTACCGGTCGAAGAGATGCCTACACAGAGCGCTGGCTCTCTAAATGCTGAACCTTACCAGACGGTCACCCTGGTGCCTTCCGAGAACAGCAATGGTGAAATGAGCTATGTTCTCGTGGTGCAAGAGGAAGCGCAGCCGCTTATGAATGTTGCTATAAAGgaAGAGAAACACGCCGTAGACATATACAAGTTTGAAGATGAAGAACCGGAGGAAATGGAAGAGCCGAATGTTGAACAGGTGAAACGTAAGCGGCCTAAGAACGTTAAGACATCACGTCCCCTGTTCACGTGCAACTTCTGTAACTACAGCAGTCACagacgGTATTTGTTAATCCGTCACATGAAGACTCATTCAGAGGATCGGCCGCACAAGTGCGACGTTTGCGACCGAGGGTTCAAGACGCACGCTTCCCTTCAAAACCACACCAATATGCATAATGGTGTCAAGCCGCATCTCTGCAAGTTCTGCAATGCTAGCTTCACTACCAGCGGTGAATTGGTCCGCCACGTCCGATACAAGCACACGCATGAGAAGCCTCACAAGTGCACCGAATGTGACTACGCTTCTGTGGAGCTATCCAAACTGAGACGGCACGTTCGATGCCACACTGGTGAGAGACCTTATCAGTGTCCGCATTGCACGTACGCGTCGCCCGATACCTTCAAGTTGAAGCGACACCTTCGCACCCACACGGGGGAAAAACCATACAAATGTGATCTGTGCAACATGTGCTTCACACAGTCTAACTCACTGAAGGCACACAAACTTATACATAACGTGGCAGAAAAGCCAGTATACGCGTGCGAGCTGTGCCCAGCACGTTGCGGTCGTAAGACCGACCTACGCATTCACGTGCAGAAGCTTCATACTTCGGACAAGCCTCTCAAGTGTAAACGGTGTGGCAAGACCTTCCCGGATCGATACTCGTGCAAGCTTCATAATAAGACTCACGAAGGCGAGCGATGCTACAAATGTGACTTATGCGCTTACGCGTCAACCACCCTGCGTCATCTCAAGTCCCATCTGTTGAAACACACTGATGAGAAACCGTTCTCTTGCGACGATTGCTCACAGTCTTtcagGCAAAAGCAGCTGTTGCGACGTCACCAGAACCTCTACCACAACCCTGATTACGTGCCCAAGCCTCCTAAGGAGAAGACGCACTCTTGCCACGAATGCAACCGCACATTCGCGCACAAGGGCAACTTGATCCGCCACTTGGCGGTACATGATCCAGACTCGGGGCATCACGAGCGTGCGCTCGCACTTAAACTCGGCCGACAGAAGAAAGTCAAATATATCGATGCTGAAACTTTGAAGGTGTTGGAAGAGGAGGGCAGACCCAAGACACAAATGCTGAAACTTGGCGTTTCTTCAGAACTGAAACGCGGTGAAGTAGTGACTGTGAATACAGGGGACGGACAACAGTATGTTGTCCTCGAGGTTATTCAACTCGAAGATGGAACCGACCAACAAGTTGCTGTTGTGGCGCCAGACTTCCTAGGAATGAGAAATAAAGATGGTGACAACATGGTCATAGAAGTGGAAGAAGACGAGGGCGAGGGTGAAGGTAGTCAACAAAATTTACAAATGGAGGTCCAGGTAGAAGACGAAGaagaggaagaagaagaagaagaggaagAAGTAGAAGAAGAGGAGGAggaggaagaagaagaagatgtcGATATGGAAAGTAAGATGCAGAAACATATTGAGgACCAAGAAAAGGCGGCTGTAGAGCGATCCATCAAATTGGAGAAGGAAGTTGATTCCTGTTTTGGCTTTGAGgAGGACGAAACTGAAACCGATGAGGTATTCCAAGAGAATATAATTTACGAACTCGTGTAA
Protein Sequence: MPPKKKSYRNNKTIIVQAVIPEEPETENVEEEIDTNEVTYFVDEEGRYYYQPGPDPGLVSLAASEDNTIVQQEEVPVEEMPTQSAGSLNAEPYQTVTLVPSENSNGEMSYVLVVQEEAQPLMNVAIKEEKHAVDIYKFEDEEPEEMEEPNVEQVKRKRPKNVKTSRPLFTCNFCNYSSHRRYLLIRHMKTHSEDRPHKCDVCDRGFKTHASLQNHTNMHNGVKPHLCKFCNASFTTSGELVRHVRYKHTHEKPHKCTECDYASVELSKLRRHVRCHTGERPYQCPHCTYASPDTFKLKRHLRTHTGEKPYKCDLCNMCFTQSNSLKAHKLIHNVAEKPVYACELCPARCGRKTDLRIHVQKLHTSDKPLKCKRCGKTFPDRYSCKLHNKTHEGERCYKCDLCAYASTTLRHLKSHLLKHTDEKPFSCDDCSQSFRQKQLLRRHQNLYHNPDYVPKPPKEKTHSCHECNRTFAHKGNLIRHLAVHDPDSGHHERALALKLGRQKKVKYIDAETLKVLEEEGRPKTQMLKLGVSSELKRGEVVTVNTGDGQQYVVLEVIQLEDGTDQQVAVVAPDFLGMRNKDGDNMVIEVEEDEGEGEGSQQNLQMEVQVEDEEEEEEEEEEEVEEEEEEEEEEDVDMESKMQKHIEDQEKAAVERSIKLEKEVDSCFGFEEDETETDEVFQENIIYELV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -