Cpus042421.1
Basic Information
- Insect
- Cabera pusaria
- Gene Symbol
- -
- Assembly
- GCA_954871355.1
- Location
- OX940913.1:10448138-10452989[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00082 0.12 14.3 3.1 1 23 92 114 92 114 0.97 2 15 0.0099 1.4 10.9 1.1 1 23 185 207 185 207 0.97 3 15 0.00032 0.046 15.6 0.2 1 23 211 233 211 233 0.98 4 15 0.0024 0.35 12.8 0.1 1 23 238 263 238 263 0.95 5 15 0.64 93 5.2 2.2 1 23 269 292 269 292 0.95 6 15 2.8e-05 0.004 18.9 0.4 1 23 299 322 299 322 0.97 7 15 0.00086 0.12 14.2 0.7 1 23 328 350 328 350 0.97 8 15 1 1.5e+02 4.6 0.1 1 23 484 506 484 506 0.96 9 15 0.18 26 7.0 0.2 1 23 577 599 577 599 0.96 10 15 0.00031 0.045 15.6 0.2 1 23 603 625 603 625 0.98 11 15 0.00096 0.14 14.1 0.3 1 23 630 653 630 653 0.96 12 15 0.0031 0.45 12.5 0.3 2 23 660 682 660 682 0.93 13 15 0.041 6 8.9 6.5 1 23 689 712 689 712 0.96 14 15 5.4e-05 0.0078 18.0 4.7 2 23 719 740 718 740 0.96 15 15 0.00013 0.019 16.8 1.6 1 23 746 768 746 768 0.98
Sequence Information
- Coding Sequence
- ATGAATGAACGGACATTGATAACATTTGTCAAGGTGGTAAAATTAGGTGATAGTATACGTTTTAACGTGGTTAAAATTGCAGGGGAAATTTGTGACGAAGATACAAAGATCCTGTTACAAATACCCAGAATCGGTTACACACAACCTGTCGTTAGTAAGTCATTGTCTGAAACTACAAAGAAACAGAAAGAAGATATCGCAGCTAGAAGGCTGAGAGCCATCATTCTGATTGAATCCTCTAGAATATGTCCCTTCAGATGGAGAATGAATTTATATTTCTGTTTCTACTGCGACGAAAAGTTCCACGATCCCGCAAAGTTGAGAGAACATCAATACACCCATCCTCATGTCAATCCTGCTGACTTATTAAAAAACAGAAGACTGAAAAGACACGAACTGATCAAAGTAGACATAACAGACGTCGGCTGCAGACTCTGCGATGACAGCATCTCTAACTTTGTTGAACTTAAAATACATTTACACAAAAAACACAATATCATCATTGACCTGAAATCTGATGGAGTTCTCCCATTCAGATTAGTTAAAGACGTATTTATCTGTGCTCTCTGTGATAAAAGATGCGATGAATACTTGACACTAAATCAGCATATGAATGTACATTTCCAGAACTACATTTGCGAACAATGCGGCGCGGGTTTTATCACTCCAGACCGTTTGAGAACTCATTACTTTACTCACGAAACTGGTTCGTATAAATGCACCGCTGAGGGTTGCGATAAGGTCTTCCGAGCAAATAATACAATGAAAGAACATTATGCAATCGTTCATTTGAAGAGAAAACGTCATCGATGTCCGCATTGCGCTGATACGTTTATAAATTACTTCCAAAGATTGAAGCACATTGCCTCAGCACACGGCGTAAAACCGAAGGAATTTAAATGCACGATGTGTCCAAGAGTTTTTACGTTTAGCGGCAAATTGAGTGCGCATGTCAACAGGGCCCATTTGAAGACCAAACGGTATACGTGCGAGGTCTGCTCTTGGAAGGTTTTTTCGAAGAATGACTTAAAGCAACACATGGTCAAGCACGAAGGATACACGATACCTGAAGTGCGAACCTCAGCGAAGGAGACCAAGATAGTGCCGCTATTCCAAGTCGCGTACGATCGCAGCTTATGTAGACCGCTCGGCACCATCAGCGACTTCAGTAAACTGAAGAGCAAAGGATTGCCACACATCGACACCCTGACCTTCATCGTGTCTCGAACACCTTCGCCTGCATCCCCTTCCCCGCCGAGATCGCCGTCCCCGCGTAGATCTCCAACATCAACTAGATCTCCTTCCCCTCTCAAGTCAGAAGACATAAACCCTCCCGCCAAATTTCTCCTTAAACCACAACCGCAGAAAAAGTGCTCAGACATCAGACAAAACGCTCTCACAATATTCGAATTCTCAACGGCTTATCCttttatattttcaaataatgCATTTAAATGTTTCGTCTGCGCGCAACCCTACCTCGATCTCGGCGTTTTAAAACAGCACATGCAAGAACACGCCTTCGCGCCTATCAAACGACTAATGAATAACAGAAAAGAAAACGTTTTGAAAGTAGACGTGTGCGATCTCGCTTGTAAACTCTGCCTCCTGCCTATCAAAGATCTCAGCACTTTAAAATTCCATTTGAAAGAAGCACACGGAAAGCCGATTGATCCAGAACTGCAAGATAATTTGATACCTTACAATTTGAGCTTGGTCAACGAAGGATTCCAGTGCGTAATCTGTGAACAGAACTTTATCAAATTTCGCATCTTGGTGATTCACATGAGCGTTCACTTCAGTAACTACAGCTGCGAGATCTGTGGCTCAGGTTTCATGACTCTACGGCTTTTGAAGAAACATTTGGAAGTGCATGAGACGGGGAACTTTCCGTGTGATCGCTGCGAGAAAGCTTTCAGTACGAGTTATAAACGAGCTTTGCACATTCGGGGTGTACATCTCAAACAGTATCCACGTCGGTGCCCCATATGCCCTGAACGTTTCAACTCCAACTATAAGCGTACTATACATTTACAAGACGTGCACAATCAGTCGACGCGAGTGCACAAGTGTAAGACTTGCGGCCGAGGGTTCAATCTAAAGTACCACCTGATCTGCCACGTGAGGTCGGTACACCTGCAAGAGAGGAACCAGCAGTGCGACGTGTGTCACCAGCGGTTCTGCAACAAGGAGTCATTGAAGAGACACATGGTGATACACACGGGAGAGAAGAATCACAAGTGCGAAGTGTGCGGGATGGCATTCTTGAGGAGAAAGAATCTCAAAGACCATTTAAGACTACATGATATTAATTGA
- Protein Sequence
- MNERTLITFVKVVKLGDSIRFNVVKIAGEICDEDTKILLQIPRIGYTQPVVSKSLSETTKKQKEDIAARRLRAIILIESSRICPFRWRMNLYFCFYCDEKFHDPAKLREHQYTHPHVNPADLLKNRRLKRHELIKVDITDVGCRLCDDSISNFVELKIHLHKKHNIIIDLKSDGVLPFRLVKDVFICALCDKRCDEYLTLNQHMNVHFQNYICEQCGAGFITPDRLRTHYFTHETGSYKCTAEGCDKVFRANNTMKEHYAIVHLKRKRHRCPHCADTFINYFQRLKHIASAHGVKPKEFKCTMCPRVFTFSGKLSAHVNRAHLKTKRYTCEVCSWKVFSKNDLKQHMVKHEGYTIPEVRTSAKETKIVPLFQVAYDRSLCRPLGTISDFSKLKSKGLPHIDTLTFIVSRTPSPASPSPPRSPSPRRSPTSTRSPSPLKSEDINPPAKFLLKPQPQKKCSDIRQNALTIFEFSTAYPFIFSNNAFKCFVCAQPYLDLGVLKQHMQEHAFAPIKRLMNNRKENVLKVDVCDLACKLCLLPIKDLSTLKFHLKEAHGKPIDPELQDNLIPYNLSLVNEGFQCVICEQNFIKFRILVIHMSVHFSNYSCEICGSGFMTLRLLKKHLEVHETGNFPCDRCEKAFSTSYKRALHIRGVHLKQYPRRCPICPERFNSNYKRTIHLQDVHNQSTRVHKCKTCGRGFNLKYHLICHVRSVHLQERNQQCDVCHQRFCNKESLKRHMVIHTGEKNHKCEVCGMAFLRRKNLKDHLRLHDIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -