Cpus025741.1
Basic Information
- Insect
- Cabera pusaria
- Gene Symbol
- -
- Assembly
- GCA_954871355.1
- Location
- OX940900.1:24155928-24163337[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8e-05 0.012 17.5 1.2 1 23 309 332 309 332 0.96 2 12 0.016 2.3 10.2 1.6 1 19 344 362 344 366 0.95 3 12 9e-06 0.0013 20.5 0.9 2 23 372 393 371 393 0.97 4 12 1.7e-05 0.0024 19.6 3.6 1 23 397 420 397 420 0.97 5 12 1.4 2e+02 4.1 0.4 1 23 423 447 423 447 0.96 6 12 2.1e-06 0.0003 22.4 0.5 2 23 521 542 520 542 0.96 7 12 0.17 25 7.0 0.3 1 23 561 584 561 584 0.96 8 12 2.4e-06 0.00035 22.3 4.8 1 23 590 612 590 612 0.99 9 12 1.2e-05 0.0018 20.0 2.1 1 23 617 639 617 639 0.98 10 12 0.00078 0.11 14.4 0.6 2 23 646 668 645 668 0.94 11 12 0.52 75 5.5 2.5 1 19 675 693 675 694 0.85 12 12 0.00088 0.13 14.2 0.4 3 23 707 728 706 728 0.92
Sequence Information
- Coding Sequence
- ATGGATGAAAATTTCGTGGACCCTGATAAGTCACCGCTTTTTATCATTCCAAAAATGGCTACAGGAATTATAAGTGATTATAAGTTGACAGATAATGTGCTTCTCGAATTATCGATTACCACGCCCAACACTGTTGGCAAACAAACTCTCGTGTATGCTGGCTACTGTCATATTAAACTTATAGAGTCATACGATGATATGCAAAGCATTCAAAAAGCCTTGGGGAACTCTAATTATTCACATTCGccacaaaaaaattatgacaTCGAGGATATGCCTGTCATTTTCACCGACCAAGAGCAGCTATCGTTCCCAAATTACGACGAGAATCAGGTGTGGATAGATCCATCTAGAAGCCCTTACATATACAATCACTATGATGCTAAAGCACCAGAAGATTTTTCCATCCTTGATTCTGAACGTTTAATCACAGTTCAACAGAATCACACATACATCactcaaaatgtttttaattatgatAACACCGTCATCGGTGATAAGGATATGCAGCATTCACAGAACTTCAGATATGGGTCCAATAGAAGCAAACAGGTTGCGGAGCAAGCCGCATATCTTGACTTGACAAACTCAAGCTATGCTAACATGGATGATGAGCATGGTGAAATATTGATGTCTCGGATGCCAGAATTTAAGACTTACAGgaagaaaaagtgttcaatgGAGAGACGTAGACTTGTCGAGGAAGAAGACAATGCTCTGAAGCAGCTGATGTCCTCAGATATGCAGTCTGCATCGAAGCAGAGGAAAACTATCCTGTTCCAAGGCCATGATATTGATTCGGGGGAGACTATACAAAATATATCATATAATGATTCTAACGTGTACTGCACTGCCAGAGATTTGGAAGTGGATCATGAAGTTGTTATTGATGACAACATAACACCCACTCCAAAGAAGAAGAAGTACCAGTGTGACCAGTGCAAGCAGATATTCAGCCAGATATCAGAGTTCCGTCAACACATGGTCAGAAACCAcatcaaccttaaaaagaagATCCTATCCCAGGACTACATTTGTACTGAATGTGGGAAAATATTGAAGACTCAGGAGAAATTTGAGGTCCATTGCTTCGGTCATGGCAACCCAGATTTAGAATGCCCCAAGTGCCTCAAAGTGTACTCTTCGAAGTTCTCTCTACGCACACATATGAAGATACACAATCGTAAATTCTCTTGCAAATATTGCGTCCGGTCTTATTCAAGGCATTCAGAATTAAAGGCTCACCAAAAGAAAGCACATTGTATGTACTCATGTGATTTCTTTGAATGCTTGTTTGGGACAAGCGATCGAACTCTACTGTTGGAACATCAAGAGAATCACAAGAAAGGAATGACCATTGAATACGACATGTCAGGTGAAGACTCAGTCTCTACATATATTAAGAAAGATCTGCAGAATGAGAAAGGTGTATTGAATTACAgtgagttagagagagagggagaTAAGATCAAGAACGCTGACTCTGTCATGTCCAATATGTCCAACAAGGAGTTCCTACTGAATTCTGTAAAGGCTAAAAATCAGGTCTATAAAGATAAGACATGTACAGTATGCGGGAAGCAGTTCGACCGCGCCAGCGATCTGAAGCGGCACCTCATAGAGCATACCATCCGCCGCACGCTGGCCAACACTACCGCTGCGAAGAACGGTACCTACAACTTTGTCTGCGAGGTATGCAAATCTGCATCGTTCAACAAGATCGAGCAGTACAAAGCGCACCTTCGCGACCACGCCCACCTCACCACCTACAAGTGCACATTCTGCAACAAAACATTCAGCGACTCGAGCAACTTCTCCAAACACAAGAAAGTGCACGGCACCTCCTACTTCCAATGCGACCTCTGCCAAAGGAAATTCAACACTAAGAAGATGTTAATACAACACATGCAATTACACAAGCGCAGCGAATCGATCGAATGTGAGTACTGTGATAGGAATTTCTTTTTTGAATCTACCTACAATAAGCACCTAAAAGCGGCCCATACGAAGCCTGTCTGCAAGTTTATATGTAAGTTTTGTAAAACGTGTTTCACTAGCGCCAAGGCTAAGTGGGATCACGAATGGCTGGCCCATAATGTAAGGAAAAAAGTTGCCGATTGTTTTTTGTGCGGTGCCAAgtttcggaagtactcggaTCTGAAGAGACACGTTATTTTGGAGCATCAATCGGAGATGCCGTCAGCGCGGGCGCTTAGGAAATACTATGCGAAGAAGTAA
- Protein Sequence
- MDENFVDPDKSPLFIIPKMATGIISDYKLTDNVLLELSITTPNTVGKQTLVYAGYCHIKLIESYDDMQSIQKALGNSNYSHSPQKNYDIEDMPVIFTDQEQLSFPNYDENQVWIDPSRSPYIYNHYDAKAPEDFSILDSERLITVQQNHTYITQNVFNYDNTVIGDKDMQHSQNFRYGSNRSKQVAEQAAYLDLTNSSYANMDDEHGEILMSRMPEFKTYRKKKCSMERRRLVEEEDNALKQLMSSDMQSASKQRKTILFQGHDIDSGETIQNISYNDSNVYCTARDLEVDHEVVIDDNITPTPKKKKYQCDQCKQIFSQISEFRQHMVRNHINLKKKILSQDYICTECGKILKTQEKFEVHCFGHGNPDLECPKCLKVYSSKFSLRTHMKIHNRKFSCKYCVRSYSRHSELKAHQKKAHCMYSCDFFECLFGTSDRTLLLEHQENHKKGMTIEYDMSGEDSVSTYIKKDLQNEKGVLNYSELEREGDKIKNADSVMSNMSNKEFLLNSVKAKNQVYKDKTCTVCGKQFDRASDLKRHLIEHTIRRTLANTTAAKNGTYNFVCEVCKSASFNKIEQYKAHLRDHAHLTTYKCTFCNKTFSDSSNFSKHKKVHGTSYFQCDLCQRKFNTKKMLIQHMQLHKRSESIECEYCDRNFFFESTYNKHLKAAHTKPVCKFICKFCKTCFTSAKAKWDHEWLAHNVRKKVADCFLCGAKFRKYSDLKRHVILEHQSEMPSARALRKYYAKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -