Cpus042432.1
Basic Information
- Insect
- Cabera pusaria
- Gene Symbol
- -
- Assembly
- GCA_954871355.1
- Location
- OX940913.1:10544848-10549122[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.039 5.7 9.0 0.3 1 21 72 92 72 93 0.95 2 22 0.51 74 5.5 0.6 3 23 122 142 121 142 0.93 3 22 0.0074 1.1 11.3 0.9 2 23 165 186 164 186 0.97 4 22 0.0048 0.7 11.9 0.1 1 23 190 212 190 212 0.97 5 22 0.012 1.7 10.7 0.1 1 23 217 240 217 240 0.91 6 22 0.0057 0.82 11.6 2.2 1 23 246 269 246 269 0.96 7 22 0.00075 0.11 14.4 2.1 1 23 276 299 276 299 0.98 8 22 0.032 4.6 9.3 1.1 1 14 309 322 309 324 0.91 9 22 0.14 20 7.3 0.2 1 21 392 412 392 415 0.88 10 22 4 5.7e+02 2.7 0.1 2 23 442 463 441 463 0.89 11 22 0.87 1.3e+02 4.8 4.0 1 23 485 507 485 507 0.96 12 22 0.0045 0.66 12.0 0.1 1 20 511 530 511 532 0.94 13 22 0.094 14 7.8 1.6 1 23 542 565 542 565 0.94 14 22 0.011 1.6 10.7 0.6 1 23 571 594 571 594 0.91 15 22 0.00021 0.031 16.1 0.5 1 23 601 624 601 624 0.95 16 22 3.6 5.1e+02 2.8 0.1 2 23 689 710 688 710 0.87 17 22 0.018 2.6 10.1 1.2 2 23 735 757 734 757 0.92 18 22 0.084 12 8.0 0.9 2 23 780 801 779 801 0.96 19 22 3.3e-05 0.0048 18.7 1.4 1 23 805 827 805 827 0.98 20 22 0.0087 1.3 11.1 0.5 1 23 832 855 832 855 0.95 21 22 0.013 1.9 10.5 2.4 1 23 861 884 861 884 0.97 22 22 0.013 1.8 10.6 0.2 1 23 890 913 890 913 0.95
Sequence Information
- Coding Sequence
- ATGGCGGgaaGAGAGGGACATAGCGGCATTGAATCAGACAACAATGTGTTTCAATTTGAGGATTCTCACAATACTGAGAAAATTCCTGAGGTGAAGAGCAAATCCGGATACCAGAGGAGTGCTAGAGCCGAAGCAAGAATTGCCACAAAGAAGAATGCTGGCTCTATATTAGAATGTTGGACATTCTGTCCTTTTAGATGGATAAAAAATAGGTTCATATGCGCGTATTGTGAAGCAAACTTCACTGAGTGCACCTCTCTTCGAGACCACGTCCGTATTTGCTCAACCCAACACAACGTAAACGACGTTTACAATAAGTTCAAAGAAATGTCGATGATCAACATCGATATCACAGATGCTATTTGTCGTATATGCTTCACCCCCTTTGAAAACATATCTCAGATGCGCGACCATGTCGTGCATCACGGGTTAGAATACGACCTTAAACATCCAGATGGAGTATTGCCTTTTCTACTCGACAAATCCTCTTGGAAGTGTGTTATTTGTCAACAACAGTTCAATAATTTTCTCAAATTGTATGAACATATGAACACGCATTATCAAAACTATATATGCGCTACGTGTGGAAAGGGATATATGACGGCGCTGCGTTTGAGAAGGCATTTGGAAGTACATATATCTGGGTCATTTCCTTGCAACGAATGTGGCAGGATATTCACAATGCGCGCCGCAAGGGACGCCCACAAAGCGACCTCGCATCGGAAATCGCCCCGATACGAATGCCCGCACTGTTATATTCGATTTCGTAGTTACTACGATAGAATGACACATTTAAAAGAAGCTCACTCTGAAAGAGAAGTTCTTTATAATTGCTCACAATGTGATATGTCATTTAAAACTAGCGGGAAACGATCGAACCACGTTCGAACCACTCATTCCATAAGGCAAGTTGAGTATAAAAACTTTGTATGTAACGTCTGTGGCAAGTCCTgttccAATAGCGACGCTCAAAGTAGTGTAAGCGCGATtagtaaaggtggtaggaagttaAAGAAAAACGTCAGCGATCGCCAAATGCGTAGGAGACGGCGTGCTAACAACGAGTTGCCTGAAGAATCTGAAAAAAGAATATCCAAGACTATGATGAGGCGAAACGCTTTAACGCTTTTAGAATGTTCCACAGCTTGGGCCTTCCGCTGGTACCACGGCTCATTCTTCTGCGCTTATTGTGACGCTAAATTCGTGGACACGGAACCTTTGAGAGATCACGTCTTCGATAGCCATTTAAGTCAACCGCCCTCTAAATGCATCTTTGCAAAACTTACAGAAAATAACATGGTTAAAATAGAAATTACCAATATGCGATGTAGACTGTGCGATGCTCTGGTAAACGGTATTGAAGCTCTAAAATATCACATTCAAACTCACGACAAAAATATTAACGAGAGCTACAATGATGGCGTGCTGCCCTTCAAATTGAATAACAATGGACACTTCTGTCAGATATGCTCAAATCACTTCGCCAGCTTTACAAAAATCAACGAACATATGAACGTACATTTTCAGAATTATGTGTGCGATACTTGTGGCAAGGGATTTGTATCTATATCGCGATATAGGGCTCACGTTCACGCAGGATCAAATAATTACGTAAAAGGAAGTTACCCATGTGGCATTTGTGAAAAGATATTATGTAGTAAAAGTGAGAGGATCAGTCATAGATTACACGTTCATAGAAAAGGAGTGAGATACAGCTGTCCGCGGTGTCCAGAAGTGTTCACTAATTATAATACGAGAGTGAAACATCTAGTGAACTTTCACGCTCAACAGGTTTACGAATATTATTGCGAGGTTTGTGGCAAATCTTTCGATACCAGCTCCAAACGAGCTGGACACTACCGATTGGTCCACAGCACCATGACACAGAAAGAACATCTGCGATGCTCCCAATgcCGGGACCTCATCGAAGTCTGCTCGTCGTCCACAGACGCACCTAAAATCGTTTGGAAACGAAAGAGGGTACCTGTAGGAGATAAAGCTAACGCGGCTTTAATCCTAAAGCATTCTAACGCTGTTGTGTTCAGATGGCAAAGAGGAAAAATAATGTGCGCTTACTGTCCGAAAATATCCTCTAGCATACAAGAAATCCGTTCACATTCATCCGAACACAACAGACTTGACATATTCGATAATCCTCAAGTTCGCCAACTATTTCCACTTAAAGTAGACATAACTGACTTATGTTGTACTATTTGTAATATACCCACTAGTAGCATAGATAATCTGAAAGTGCATCTCTCGCATGCCCATTGTCAAATCATAGATTCTAATTTTGCTGATGGTCTCatacctttttatttaaccgGCAAAGTATTAAAATGCGTTCTTTGCGAAACTCAGTTCGATAAATTCATGACCCTTTTCATCCATATGAATAACCATTATCCCAGTTTCGTATGCCATACTTGCGGGAAAGCCTATTCAGGACAGAACAAACTGCGATCACATCAGGCTATGCATGAAATTGGAGAATTTAAATGCACGCAATGCGATGTCGTTTTGTCTAACAGAATAGCTAGAAATAGGCATATGAACGACACTCATGGCCCCAAAGAGAAATACCGCTGCCCTATTTGTGACGATCACTTTGATTCATATCATAACCGCTTGAGACATTTAAATGTGGTGCATGGAGAGAAAACTGAGTACAAATGCTTATACTGCCCTGCTGTCTTCATCAGCAGCACATCCAGATACTCTCACATAAACGGTGTACACATGCGAAAACGTAAAAAGAAGAGAAATAAAGAACGATGTGATATTGAATTTCAGAAATAG
- Protein Sequence
- MAGREGHSGIESDNNVFQFEDSHNTEKIPEVKSKSGYQRSARAEARIATKKNAGSILECWTFCPFRWIKNRFICAYCEANFTECTSLRDHVRICSTQHNVNDVYNKFKEMSMINIDITDAICRICFTPFENISQMRDHVVHHGLEYDLKHPDGVLPFLLDKSSWKCVICQQQFNNFLKLYEHMNTHYQNYICATCGKGYMTALRLRRHLEVHISGSFPCNECGRIFTMRAARDAHKATSHRKSPRYECPHCYIRFRSYYDRMTHLKEAHSEREVLYNCSQCDMSFKTSGKRSNHVRTTHSIRQVEYKNFVCNVCGKSCSNSDAQSSVSAISKGGRKLKKNVSDRQMRRRRRANNELPEESEKRISKTMMRRNALTLLECSTAWAFRWYHGSFFCAYCDAKFVDTEPLRDHVFDSHLSQPPSKCIFAKLTENNMVKIEITNMRCRLCDALVNGIEALKYHIQTHDKNINESYNDGVLPFKLNNNGHFCQICSNHFASFTKINEHMNVHFQNYVCDTCGKGFVSISRYRAHVHAGSNNYVKGSYPCGICEKILCSKSERISHRLHVHRKGVRYSCPRCPEVFTNYNTRVKHLVNFHAQQVYEYYCEVCGKSFDTSSKRAGHYRLVHSTMTQKEHLRCSQCRDLIEVCSSSTDAPKIVWKRKRVPVGDKANAALILKHSNAVVFRWQRGKIMCAYCPKISSSIQEIRSHSSEHNRLDIFDNPQVRQLFPLKVDITDLCCTICNIPTSSIDNLKVHLSHAHCQIIDSNFADGLIPFYLTGKVLKCVLCETQFDKFMTLFIHMNNHYPSFVCHTCGKAYSGQNKLRSHQAMHEIGEFKCTQCDVVLSNRIARNRHMNDTHGPKEKYRCPICDDHFDSYHNRLRHLNVVHGEKTEYKCLYCPAVFISSTSRYSHINGVHMRKRKKKRNKERCDIEFQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -