Cpus038602.1
Basic Information
- Insect
- Cabera pusaria
- Gene Symbol
- -
- Assembly
- GCA_954871355.1
- Location
- OX940910.1:3869693-3874261[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0023 0.33 12.9 5.5 1 23 171 194 171 194 0.95 2 17 8.3e-05 0.012 17.4 0.2 1 23 203 226 203 226 0.98 3 17 0.0043 0.62 12.0 0.5 3 23 240 261 239 261 0.97 4 17 9.8e-05 0.014 17.2 0.5 1 23 270 293 270 293 0.98 5 17 3.5e-05 0.005 18.6 0.9 2 23 306 328 305 328 0.96 6 17 0.00064 0.092 14.6 2.1 2 23 359 381 358 381 0.96 7 17 0.0012 0.17 13.8 1.5 2 23 391 413 390 413 0.96 8 17 0.02 2.9 9.9 0.6 2 20 418 436 417 438 0.91 9 17 0.001 0.15 14.0 0.5 2 21 443 462 442 465 0.94 10 17 0.059 8.5 8.5 0.8 3 23 475 496 474 496 0.93 11 17 0.0011 0.16 13.9 5.7 1 23 501 524 501 524 0.95 12 17 0.00077 0.11 14.4 1.4 1 23 535 558 535 558 0.95 13 17 0.002 0.29 13.1 0.2 1 23 580 603 580 603 0.90 14 17 0.42 61 5.8 0.4 2 23 610 630 609 630 0.94 15 17 0.048 7 8.7 2.9 2 23 636 657 635 657 0.97 16 17 0.016 2.4 10.2 0.1 1 23 723 745 723 745 0.96 17 17 0.082 12 8.0 1.9 1 23 751 774 751 774 0.97
Sequence Information
- Coding Sequence
- ATGCTGTGCAGTGAAGTGTTTAATTCTGTCAATCCATACTTGCATGCTACAaTCACCAAAAGAACAATGTCCTTCAAGCTGAAGCCTATAAATGACAAAACGGACAGGCAAGACCCAACCTCCTTCCTGCCAGAAGAAGAGATGTCCTATGAgatcaagaaaaagaagaagaaaaaaaagaagaagcAAGAAGATCCATTCAAGGACATTGAACAGAAACTCGCCGTAGATAGAGAGCCAGATATAACTGCGTTAGATCCTGATATAGGGATGAGTATGGATCCAGAAGTAACCATCAAGGTGGAGAATATTGAGGTTGATCTGGATATTGCTGATTACGACTGTGATCCTTACCTAGAAGATGAATTACCACCTGAACCCATTGTTAAGCTAGAAGAGCAGAAAGGTGAAGCTGCCATCCTCACCTTCGAAAATGTCATCAACGACAAACTCAAGTTGGAAGACATCAAACCCAAAATTGAACTTGAGATGGCTGAGGAACCCCAAAACCACTTCTGTAAAGTGTGCCATTTAGTCTTCAAGAACCCTAGAACGCTTCTCATGCATCAGAAGAGAAAGCACAAGCGTTTTAGAAGATATTTTGAATATGTATGTGATCTATGCGGCATGTCATACGATGCAAAGAATAGCTTAGTCGCTCATATGAGACGAAAACATGGACCGGATGCAAATAAAGATGACATGATAGAACGAGCCTGCGATATCTGTGCTCTGGTCTTTAAAGGCACATCAAGGTTAAGAATGCACATGCGGAGAAAACACGGATCTTACGATGATACGTTCAAATATGAATGCCAAGACTGCGGTCTAACCTACGACAAATATGCAAGCTTAATCGTACACAGACGTAGAAAACATCTAAACTTAATCAAGCCTAAATTAAATCAATGGCTCACGTGTCCGTATTGTGCGAAAATATTCAGCAGAAGAGAAACTTATTCGCGACATATACAAAGAAACCATCAGGTTGATGAGGACGATGAGAAAAAGGGAAATCCTGAAGATGAAAAGTTAATAAAGAATAGTGTGACGAATGAACAAACTGGGGAGATCACGTGCCAACATTGTCCGTTGATGTTTTCTTCAGTTATGTACTTAAAACTACACATGAAGAGAAAACACAATGTATTGTCTGAAGACTTCAGATTGAAATGTAAACTTTGTAACCTCTCATATGATAAAGTTGAAAGTTTAAAACGCCATGTCCGAAGAAAACACGACGCGGGGACGTACTGTACTGTTTGTGATAAACAGTTTATTTCCAGAGAAGCATATTTAAATCATTCTCACACGAAAGTCGCTAAGGAATGCCAAATATGTGGTCTCATTTTTGCTAGTCAAGGAGGTCTAGCGAAGCATTTGAGGTGTACGCATAAAATAGCAGCAGACAAGACTGTTTTTTGTACTATTTGTAATGAAGGTTTCTTTGATAAACGTCAGTTGAAACCACATTTCATGAGAGTACATTTACAAGTATCTTACACATGTAAATTTTGCAAGAAATTGTTTAAAACTAAAGAGAGTTACAGACGTCATCTAATGTTTAAGCATCCTACAGATTATACGGACGTAGATAAGACACACCCATGTGATAAGTGTTCGGAGATATTTGTTAATGAATTTGAATTGTGTCGACATATAAACTTGGTGCATAGAGAAAAGACGGAACAACTAGCTCACATTAAAAAGGAAGAGGATAATAATATTAAGCAAACGTTTCAATGCACTAAATGTCCCAGTGAGTTCGGGAGTTGGGACGAATTGAGAGCTCATTTCGATCAGATGCATCATTTGATAGAAGAAATTCAATGTCAAAAGTGTGGTGAAATGATGCTCCGTGGCGAACTCCTTAAGCATATGAAATTGCACGATGAAATCGAGATGAAGTGTAGATATTGTGAATTTACAACAAAGAATAAGGTGAGTATGACCCAGCATACACTTCGACACACAAATGCAGATACGTTGAAATGTGATCATTTTGGTTGTCGATACAAAACTTTTTACGAAGATGCAATGGCTAAACATAAGCAGAAACATAATGAAATTGGTGTGAAATTGCAATGTGCGAGTTGTCCATTCCAAacaatgaataaatatatattgaagTATCACGAAGAAGCACATTCGACAGGTAAAAAGCGTTACGCTTGCAATCAGTGTGATTATGCAACAGTGCTGCCAGCAAATCTAGTGCAACATAAGTATAAGCATGCAACAGAAAAGAGGTTTAAATGTGAAGTCTGTCCATTTGCAACTAAATATAATACGTCCCTACGTTTCCATGTTAGGAAAAAACACTGTGATCTGCCTACGTTAAGGTAG
- Protein Sequence
- MLCSEVFNSVNPYLHATITKRTMSFKLKPINDKTDRQDPTSFLPEEEMSYEIKKKKKKKKKKQEDPFKDIEQKLAVDREPDITALDPDIGMSMDPEVTIKVENIEVDLDIADYDCDPYLEDELPPEPIVKLEEQKGEAAILTFENVINDKLKLEDIKPKIELEMAEEPQNHFCKVCHLVFKNPRTLLMHQKRKHKRFRRYFEYVCDLCGMSYDAKNSLVAHMRRKHGPDANKDDMIERACDICALVFKGTSRLRMHMRRKHGSYDDTFKYECQDCGLTYDKYASLIVHRRRKHLNLIKPKLNQWLTCPYCAKIFSRRETYSRHIQRNHQVDEDDEKKGNPEDEKLIKNSVTNEQTGEITCQHCPLMFSSVMYLKLHMKRKHNVLSEDFRLKCKLCNLSYDKVESLKRHVRRKHDAGTYCTVCDKQFISREAYLNHSHTKVAKECQICGLIFASQGGLAKHLRCTHKIAADKTVFCTICNEGFFDKRQLKPHFMRVHLQVSYTCKFCKKLFKTKESYRRHLMFKHPTDYTDVDKTHPCDKCSEIFVNEFELCRHINLVHREKTEQLAHIKKEEDNNIKQTFQCTKCPSEFGSWDELRAHFDQMHHLIEEIQCQKCGEMMLRGELLKHMKLHDEIEMKCRYCEFTTKNKVSMTQHTLRHTNADTLKCDHFGCRYKTFYEDAMAKHKQKHNEIGVKLQCASCPFQTMNKYILKYHEEAHSTGKKRYACNQCDYATVLPANLVQHKYKHATEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -