Basic Information

Insect: Cabera pusaria
Gene Symbol: -
Assembly: GCA_954871355.1
Location: OX940913.1:10566509-10569319[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.71 1e+02 5.0 1.2 3 22 43 63 41 66 0.85

2 18 0.009 1.3 11.0 0.3 2 23 90 112 89 112 0.95

3 18 0.034 4.9 9.2 0.4 1 23 135 157 135 157 0.96

4 18 1.9e-05 0.0028 19.4 1.5 1 23 161 184 161 184 0.96

5 18 0.26 38 6.4 0.1 3 20 191 208 189 209 0.91

6 18 0.039 5.6 9.0 2.3 1 23 217 240 217 240 0.94

7 18 0.0029 0.42 12.6 0.3 1 23 246 268 246 269 0.92

8 18 7.8e-05 0.011 17.5 0.9 1 23 273 295 273 295 0.95

9 18 2.3e-05 0.0033 19.2 0.8 1 20 301 320 301 323 0.94

10 18 0.00039 0.057 15.3 2.0 1 23 329 352 329 352 0.97

11 18 0.08 12 8.0 1.8 3 22 402 422 401 425 0.84

12 18 1.5 2.1e+02 4.1 0.1 2 20 449 467 448 471 0.88

13 18 0.0017 0.25 13.3 0.7 2 23 495 516 495 516 0.97

14 18 0.00088 0.13 14.2 0.9 1 23 520 543 520 543 0.90

15 18 0.82 1.2e+02 4.8 0.4 3 20 550 567 549 569 0.93

16 18 0.0059 0.86 11.6 2.3 3 23 578 599 576 599 0.94

17 18 0.0094 1.4 11.0 0.7 1 22 605 626 605 628 0.87

18 18 0.00018 0.026 16.4 2.8 1 23 632 654 632 654 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.71	1e+02	5.0	1.2	3	22	43	63	41	66	0.85
2	18	0.009	1.3	11.0	0.3	2	23	90	112	89	112	0.95
3	18	0.034	4.9	9.2	0.4	1	23	135	157	135	157	0.96
4	18	1.9e-05	0.0028	19.4	1.5	1	23	161	184	161	184	0.96
5	18	0.26	38	6.4	0.1	3	20	191	208	189	209	0.91
6	18	0.039	5.6	9.0	2.3	1	23	217	240	217	240	0.94
7	18	0.0029	0.42	12.6	0.3	1	23	246	268	246	269	0.92
8	18	7.8e-05	0.011	17.5	0.9	1	23	273	295	273	295	0.95
9	18	2.3e-05	0.0033	19.2	0.8	1	20	301	320	301	323	0.94
10	18	0.00039	0.057	15.3	2.0	1	23	329	352	329	352	0.97
11	18	0.08	12	8.0	1.8	3	22	402	422	401	425	0.84
12	18	1.5	2.1e+02	4.1	0.1	2	20	449	467	448	471	0.88
13	18	0.0017	0.25	13.3	0.7	2	23	495	516	495	516	0.97
14	18	0.00088	0.13	14.2	0.9	1	23	520	543	520	543	0.90
15	18	0.82	1.2e+02	4.8	0.4	3	20	550	567	549	569	0.93
16	18	0.0059	0.86	11.6	2.3	3	23	578	599	576	599	0.94
17	18	0.0094	1.4	11.0	0.7	1	22	605	626	605	628	0.87
18	18	0.00018	0.026	16.4	2.8	1	23	632	654	632	654	0.97

Sequence Information

Coding Sequence: ATGTTAGTGAGGCTCAGTCTATTGAAGACTGTGCAACAATCTCCTAACAGCATCGCGCGGACAAACGCCACTCTGTTAGTGCAGTACACCACTGCTTATCCGTTTCGACTGCCTTCCGATGATGTCTGTTGTATCGTGTGCTGCAAGGAGTTCCCAGATCCACAGGATTTTAGGGATCATATGAAACAAGATGACCATAAAACTCCACACAAAATATTGCGTCTCCTGCATCAGACGGTTCCTTTAAAAGTGGACATCACAGATCTCCGATGTAAAATCTGTTCCCAAACGTTCGATAAACTAGAGGATATTGCTACTCATTTGACCACCATACACAGCGTGTTCGGTATCAACTGTGACTATGATTTAGGCGTACATCCTTTTAGAATATACAAGGGCATCTATGCATGTATGTCGTGCCCCGACAAATTCGTAACTCTACGCGCATTGAGCAGGCACACTCAGACCCATTACGTAAAACACACTTGCGAAACATGCGGGAAATCATACTCAAATCTAGGTTCTCTCAAAGTGCACACGGAACGCTCACATCAAGGACCAAAAACTATatgcaaaaaatgtaaattaaccTTCGATACGTTAGAGGCAAGACAAATCCATTTAGCCGACTCGACCGGCTGCTGGCTGTATACGTGCCACTCGTGTGGCGAAAAGTTCATGACGATGAATCTGCGGAATAAGCACTTGCAGGACGAGCACAAGCTCGAGACCCGATACGCGTGCCCTGAATGTCCCGAAGTGTTCGCCGACAAAGGCAAGCGAAGGAGTCACTTTGTGATCCATCACACGGATAAGTTTAAATGCTCCCGGTGTGACAAATCGTTCCCAACTAACACAATGCTGGTCAACCACTTTGTTGTACATACTGCTGAAAAGAAATTCCAATGCAACGTGTGCTTGAAAGAGTTTAGCAGACTGAAGAACTTGAAACAGCATATGCCTATTCATATGGAGGTCAAACCATACAAATGCTCTGCTTGCAACAAGCAGTTCAATCAACGTGTCAGTTGGAAGACTCACATGTCTTCGTATCATCCTGAAGTGGAAACACTGAAACCTAGTTCTAAATGcacagttaaattaaataaaaAAGTAACCCCCAATGTCGTCGCGCGGAGACACGCCACTCTGATAGTGCAGTACACGACGGCTTATCCATTCAAACTGCCGTCTGATGATATCTGTTGTATCGTCTGCTGCAAGGAATTCCGCGATCCGGAAGACTTTAGACGGCACATGAATGAGGACGACCATAAATTGTCTCAAAAGATGTTGCGATATATTCCCACGTCATACACTGTCAAAATTGATATCACCGAGCTTAGTTGTAGATTATGTTCGCAGAACTTCAACAGCTTAGAAGATATCGTCGCTCATTTGCCGACCGCTCATAATATATCGGGATTTGACTCTAAGGACGAGTTAGGCGTTCATCCCTTTAAAATCTACAAAGGGAACAATACCTGTTTGTTTTGCCCCGAAAAGTTTGTGAGTCTACGCGCTCTGAGCAGACACACGCAGACTCATTATTTGAAGCATACGTGCGAGACTTGCGGTAAATCTTACGGCAATTTAAATGCGCTCAAAGTGCATACGACTTTCGCACACATCGGTTCGAAAACTTTGTGCCGAACTTGCAAGACAACATTTGATTCTCTGGAGGAAAAACAAAAGCATACCGCGGAGTCCCGCAAGTGCTGGCtgcatttatgcagtatttgTGGAGAGAGATTCAAGTCAAGGAATTTGAGGATGAAGCATTCACAAACTGCACACAACACGGATAATTACCATCCTTGCCCCGAATGTTCCGAGGTTTTCTCGGACAAAGCTAGGCGTCGAAAGCATTTCATCGCGACTCACACCCAGAAGTTTAAGTGTTCGTGCTGCGATAAAACGTTTTCTACTAATTTCGCGCTTAATAACCACCTCGCTGTACATTCTGCGGAAAAGAAATTTTGA
Protein Sequence: MLVRLSLLKTVQQSPNSIARTNATLLVQYTTAYPFRLPSDDVCCIVCCKEFPDPQDFRDHMKQDDHKTPHKILRLLHQTVPLKVDITDLRCKICSQTFDKLEDIATHLTTIHSVFGINCDYDLGVHPFRIYKGIYACMSCPDKFVTLRALSRHTQTHYVKHTCETCGKSYSNLGSLKVHTERSHQGPKTICKKCKLTFDTLEARQIHLADSTGCWLYTCHSCGEKFMTMNLRNKHLQDEHKLETRYACPECPEVFADKGKRRSHFVIHHTDKFKCSRCDKSFPTNTMLVNHFVVHTAEKKFQCNVCLKEFSRLKNLKQHMPIHMEVKPYKCSACNKQFNQRVSWKTHMSSYHPEVETLKPSSKCTVKLNKKVTPNVVARRHATLIVQYTTAYPFKLPSDDICCIVCCKEFRDPEDFRRHMNEDDHKLSQKMLRYIPTSYTVKIDITELSCRLCSQNFNSLEDIVAHLPTAHNISGFDSKDELGVHPFKIYKGNNTCLFCPEKFVSLRALSRHTQTHYLKHTCETCGKSYGNLNALKVHTTFAHIGSKTLCRTCKTTFDSLEEKQKHTAESRKCWLHLCSICGERFKSRNLRMKHSQTAHNTDNYHPCPECSEVFSDKARRRKHFIATHTQKFKCSCCDKTFSTNFALNNHLAVHSAEKKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -