Cpus042592.1
Basic Information
- Insect
- Cabera pusaria
- Gene Symbol
- -
- Assembly
- GCA_954871355.1
- Location
- OX940913.1:12020043-12030065[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.76 1.1e+02 5.0 6.2 1 23 96 118 96 118 0.94 2 27 0.98 1.4e+02 4.6 0.2 2 23 147 169 146 169 0.90 3 27 0.012 1.8 10.6 2.0 2 23 192 214 191 214 0.93 4 27 0.00036 0.052 15.4 0.1 1 19 219 237 219 238 0.96 5 27 5.9e-06 0.00085 21.0 1.1 1 23 246 269 246 269 0.96 6 27 0.0061 0.89 11.5 0.5 1 23 274 297 274 297 0.97 7 27 0.037 5.4 9.1 6.0 1 23 306 329 306 329 0.97 8 27 0.17 24 7.0 0.7 2 23 336 357 336 357 0.96 9 27 0.52 76 5.5 0.3 1 12 363 374 363 380 0.77 10 27 0.66 95 5.2 2.1 2 23 415 436 414 436 0.96 11 27 3.5 5.1e+02 2.9 3.7 2 23 461 482 460 482 0.94 12 27 0.14 20 7.3 1.8 2 23 503 525 502 525 0.95 13 27 0.00019 0.027 16.3 3.5 1 23 629 652 629 652 0.98 14 27 0.17 25 7.0 0.1 2 23 684 706 683 706 0.96 15 27 0.032 4.6 9.3 0.4 1 23 727 750 727 750 0.94 16 27 0.014 2.1 10.4 0.2 1 23 755 778 755 778 0.93 17 27 0.23 34 6.6 2.0 2 23 824 845 823 845 0.94 18 27 0.0047 0.68 11.9 1.2 2 23 866 888 865 888 0.96 19 27 0.002 0.29 13.1 3.8 1 23 984 1007 984 1007 0.98 20 27 2.1 3.1e+02 3.5 0.5 2 23 1039 1061 1038 1061 0.94 21 27 0.015 2.1 10.4 0.7 1 23 1082 1105 1082 1105 0.95 22 27 4.6e-05 0.0066 18.2 0.8 1 23 1110 1133 1110 1133 0.94 23 27 0.16 23 7.1 1.6 1 23 1139 1162 1139 1162 0.92 24 27 0.23 34 6.6 0.3 2 23 1168 1190 1167 1190 0.93 25 27 0.00048 0.069 15.0 1.6 1 23 1194 1217 1194 1217 0.97 26 27 9.8e-06 0.0014 20.3 1.2 2 23 1224 1245 1223 1245 0.97 27 27 0.012 1.8 10.6 2.1 1 23 1253 1275 1253 1276 0.96
Sequence Information
- Coding Sequence
- ATGACATACAGAAGAACGCATCTCGTTTCAGATCGCACCAAAACCGAAGGCTGTAAGCGATCACGGAAAACCGCGAAGGCGACACCTAaactaaaaatcaaaatcgaaagCAACGACGATATTTACACTACCGATGACGACGTCACCCTTAAAACTTACCAAACACGTAACGAAAAACATCCCAAAAATCATAGAAAGTTAATACAGTGTCTCAAAGTTCGAAAAAATATCGCTTGTATTCTCAACCATTCTACGGCTATCCCATTCTCGCATGCTAACAGCAAATTCAATTGCTTCGTATGTCACGAGGGCTTTCATCGCTGCGACTTATTACAACAACATTTCGAAGAGCATTCCTCTTACAACTTCGAACCCTTGGGCAATATCATGAAGAAAGTTAACAAAAACTCCTCATTCAAAGTCGACATTGCAAACTTACGTTGCAAATTATGCAATGAATTGTTTTTTGATTTAAAGCCTCTTATAGATCATCTCATTGATAGgcataatatagaatacgatgCAAGCGCAAAGGATGTTGTACAACCGTTTAAACTTCGCGATGGGGACTTGCGATGCCACATTTGCAATGAAAAGTTTACATACTTCATCAAACTAGTCACCCATCTGAATGACTATCAtgagattaaaaagtacatgtGCGATATATGTGGGAAATCGTTTAAAGAATTGAGTTCGTACAATATTCATGGATGGCATGTCCATGGCCCGGGGTATAATTGCTCTGATTGTGGTAGACGATGCTCCAATCCTTCTTTGTTACGAGAGCACATGGCGAGCACTCACGGTAAGGGCAAATTTAAATGCCTCGAATGTCCTGAGGAATTTACGTCTATCTACAAAAGAAAGAAGCATATCATATCCGTTCATAAAGCGGCAGAAGTGCCATCTTCTTTCAAATGCCAACATTGCGACAAAGTCTTCACTTGTACGTCTCAAAGAAATGTGCATGTTAGAAAAGTGCACTTGCAAGAGAAGAATGAGGTCTGCCCGATTTGCCACGCGGAGTTATTTAATAAGACCAGGTTAAACTTGCATATGGTGAAACATTTGCGAGAGAGAAACCATGTTTGCGATATATGCGGCAAGAAGTATCAATGGAAGAAGAATTTGAAGGATTCTATCCGGAGGCTAAGATTACAAAAGAGCATAAGGGTGCGTAACCTCGCAATTCTCTTTAATAACACCAAGATTATACCTTTCAAACACCGCGCCAAGCTTAGGTGTTATTTCTGTAGCTTGGAAGTAAAAAGCAGGCATGACTTGTACGAACATACGCTGACTCACTTGCCGTGCTTCGTAACTGAACCACCACTCAAAGACTTGAAAGATGAGATAAACATCGATGTATCCGAAATAGAATGCAAATGTTGCTCGAAATTATTCAATACCTTTAATGAAATAACTACCCATTTGAGAAAGCACAGATTGCATTACGATCAAGAAGCTCCGATAGACGCTAAAGCATTTAGACTTATCGATTTGAAATGTTTCGTGTGCGGACACCAATTGGAAAGTTTCGAAACACTCGCTCACCATATGAAAGAAGTACATCCTTCTGAAGAACTACAGTCCGGTTATTGCCCCCCAAAATTATCTAAGAAAAATAGCTTAAAAGCACAAAAAACTCATCACACATCGAAGATCAATCAACAATCGAAAAATACGAGGAAAAGTAATTATGTAACTCAGGATGATACTTCTGGTGTCGCTGAGAAGAGATTCgtagttaaaaacaactttctcTGTCAAGAATTGGATCGCAAAGCGCAAGAACGCCTAACTGCTAATGAACTAATACAAAAAATTACTTTTATCTTCAACAACAGCAGTATACTCCCATTCAGGTTCTATTTCAATCACTTCCAATGTTTTTACTGCCCTAAAGTATTTACGATGTGTCAAGAACTCAAATCTCACACAATGACGGACCATTCGGTTGTTCCCGAGAAGGAATTGAAACGGATGCATTCAAAATATTTAAGGCAAGCTCACGAGATGAAGTTTAAAGTTGATACAGTGCAGTTGCAATGCAAAGTGTGCTATGTCGAACTAACGGACTTGAATACGTTGATTTCTCATTTAGAAACCGAGCACGGAGCCGACCTTGACGGATGCTTAGCATTGTTCCAACCTTTCCGTCTCATCCATGATAACTTTGAATGTACTTCGTGCCCTCAAAAGTTCAGATATTTCATTACACTTTTAGCCCACGTAAATGCAAATCACGCTGAAACAGTATTTGTCTGTGATTATTGTGGGAAAACGACGGCAGATAACGTGTCGATGGCGTTCCATGTGAGAAAAGTTCATCAAAACGAGAACCGCTTGGAAGTAGAAAGCAGGCATGACTTGTACGAACATACGCTGACTCACTTGCCGTGCTTCGTAACTGAACCACCACTCCAAGACTTGAGAGATGAGATAAACATCGATATATCCGAAATAGAATGCAAATGTTGCTCGAAAGTATTCAATACCGTCAATGAAATAACTACACATTTGAGAAATCACAGATTGCATTACGATCAAGAAGCTCCGATAGATGCTAAAGCATTTAGACTTTTCGATTTGAAATGTCTCGAGTGCGGACACCAATTGAAAAGTTTCGGATCTCTCGTTCGTCATATGAATAAAGTACACCCTTCTAATGATCTACGGTTCGATCACTGCTCCTCCGAATTAGAAAACAGCTTACAAGAACAGACGAACAATCAACAATCGAACAatacaaacaaaagtaatgatatAACCAATGGAAATACTTCTGATGTCACCGATAAGAGTTTCGTCGATAGTAACGACTTTTTCGGCCAAGAGTTGGATTGCAAAGAACAAGAACGCCATAATCCTGATGAACTACTTGAAAAAATTACTTACATCTTTAACAACAGCACTATACTCCCATTCAGATTCTATAACAGTAGATTCCAATGTTTTTACTGTTCTAAAGTGTTCATTTTGTGTCGAGATCTCAAATCTCACACGATGACGGACCATTCGGTCGTTCTCGAGAATGAATTGAGACGATTTCATTTAAGATATCTAAGCCAAGCTTACGGGCTGAAGTTTAAAGTTGATACGGTGTGGTTGCAATGCAAAGTGTGCTATGTCGAACTAACGGACTTGAGCTCGCTGATTTGTCATTTAGAAACAGATCACGGAGCCGAACTCGACGGATGCTTAGCATTGTTCCAACCTTTCCGTCTCATCCATGATAACTTTGAATGTCCTTCGTGCACGCAAAAGTTCAGATATTTCATTAAACTTTTAGCCCACATAAATGCTAAGCACGCTGTAACCGAATTTGTCTGTCATTATTGTGGGAAAACGACAGCGGATAACATGTCGTTGAAGATTCACATTTTATTCGTTCATGAGAACGAGAATCGGTATAGGTGTAGGATATGCAAACAATTGTTCACTAAGAAATTAAGGTTGCAAGAACACATCGGTCAGAAGCACGGGATAAAGATGATATCTTGTAGGCTTTGCCCTAAGCGGTTCATTTCTACCTACGCTAAGTCGGTTCACACTGCAACCGATCACGGCGGCGGTTTTGCCTGCCCACAGTGCGGCAAAAAATTCCCCGTATACTGTTACATGAACAATCACCTTAGAAGGGTgcactttaaagaaaaaaacgTAAAGTGTAACTTTTGCGATAAAAAGTTCTTCAACCAATCGAAACTTACCGTTCATATGGCTGTCCATAAAGGCCGTGCTAATAAAACGTTTCAATGTGATATATGCAAACAAGAGTTTATTTGGAGGCAAAGTTTAAAATATCATATGGCTCGTCATCATAAATAA
- Protein Sequence
- MTYRRTHLVSDRTKTEGCKRSRKTAKATPKLKIKIESNDDIYTTDDDVTLKTYQTRNEKHPKNHRKLIQCLKVRKNIACILNHSTAIPFSHANSKFNCFVCHEGFHRCDLLQQHFEEHSSYNFEPLGNIMKKVNKNSSFKVDIANLRCKLCNELFFDLKPLIDHLIDRHNIEYDASAKDVVQPFKLRDGDLRCHICNEKFTYFIKLVTHLNDYHEIKKYMCDICGKSFKELSSYNIHGWHVHGPGYNCSDCGRRCSNPSLLREHMASTHGKGKFKCLECPEEFTSIYKRKKHIISVHKAAEVPSSFKCQHCDKVFTCTSQRNVHVRKVHLQEKNEVCPICHAELFNKTRLNLHMVKHLRERNHVCDICGKKYQWKKNLKDSIRRLRLQKSIRVRNLAILFNNTKIIPFKHRAKLRCYFCSLEVKSRHDLYEHTLTHLPCFVTEPPLKDLKDEINIDVSEIECKCCSKLFNTFNEITTHLRKHRLHYDQEAPIDAKAFRLIDLKCFVCGHQLESFETLAHHMKEVHPSEELQSGYCPPKLSKKNSLKAQKTHHTSKINQQSKNTRKSNYVTQDDTSGVAEKRFVVKNNFLCQELDRKAQERLTANELIQKITFIFNNSSILPFRFYFNHFQCFYCPKVFTMCQELKSHTMTDHSVVPEKELKRMHSKYLRQAHEMKFKVDTVQLQCKVCYVELTDLNTLISHLETEHGADLDGCLALFQPFRLIHDNFECTSCPQKFRYFITLLAHVNANHAETVFVCDYCGKTTADNVSMAFHVRKVHQNENRLEVESRHDLYEHTLTHLPCFVTEPPLQDLRDEINIDISEIECKCCSKVFNTVNEITTHLRNHRLHYDQEAPIDAKAFRLFDLKCLECGHQLKSFGSLVRHMNKVHPSNDLRFDHCSSELENSLQEQTNNQQSNNTNKSNDITNGNTSDVTDKSFVDSNDFFGQELDCKEQERHNPDELLEKITYIFNNSTILPFRFYNSRFQCFYCSKVFILCRDLKSHTMTDHSVVLENELRRFHLRYLSQAYGLKFKVDTVWLQCKVCYVELTDLSSLICHLETDHGAELDGCLALFQPFRLIHDNFECPSCTQKFRYFIKLLAHINAKHAVTEFVCHYCGKTTADNMSLKIHILFVHENENRYRCRICKQLFTKKLRLQEHIGQKHGIKMISCRLCPKRFISTYAKSVHTATDHGGGFACPQCGKKFPVYCYMNNHLRRVHFKEKNVKCNFCDKKFFNQSKLTVHMAVHKGRANKTFQCDICKQEFIWRQSLKYHMARHHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -