Cpus025651.1
Basic Information
- Insect
- Cabera pusaria
- Gene Symbol
- salm_1
- Assembly
- GCA_954871355.1
- Location
- OX940900.1:22333033-22334760[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.5 2.2e+02 4.0 3.5 3 23 175 195 173 195 0.94 2 13 5.3e-06 0.00077 21.2 2.3 1 23 201 223 201 223 0.98 3 13 3.6e-06 0.00053 21.7 0.5 1 23 248 270 248 270 0.99 4 13 0.00016 0.023 16.5 0.3 1 23 276 299 276 299 0.95 5 13 8.1e-07 0.00012 23.7 2.1 1 23 308 330 308 330 0.99 6 13 3e-07 4.3e-05 25.1 0.7 1 23 336 358 336 358 0.98 7 13 0.00027 0.038 15.8 0.8 1 23 364 386 364 386 0.97 8 13 2.7e-05 0.0039 19.0 3.0 1 23 392 414 392 414 0.94 9 13 8.1e-05 0.012 17.5 0.7 2 23 421 443 420 443 0.93 10 13 0.025 3.6 9.6 0.0 2 23 449 467 449 467 0.93 11 13 0.0015 0.22 13.4 1.9 1 21 473 493 473 496 0.91 12 13 0.039 5.7 9.0 0.2 1 23 502 526 502 527 0.93 13 13 0.0058 0.85 11.6 2.0 1 23 533 556 533 556 0.96
Sequence Information
- Coding Sequence
- ATGGAGTTTAAGATATGCCGGGTGTGCCTCGACCGTACCGCCACGATATCTGTGTTCGACAGGCGCGACGAAGTGCAGTACTGCGCCAAGATCATGAAGTGCGCTAATGTGGTGATCACCGAGGGTGACGGTTTCCCGGACGCCATCTGTGAGGGCTGCGCCGGCGACCTGGCTGTCTGTTACGAGTTCGCGGCGCGCTGCGAGGCCTCCGACAAAGCGCTGCGCTGCCTCGACCTGCTGCAGACCGCGCCCGAACCTGACGCCAAGCCTCACGACTCCATCAAACAGGAACTCAAGCCCGACGTCGACTCCGCCTTCCATTCTGATCTCTTCCACAGCTTTCTCGATCAGGACCTTCCCGATCATGAAGACCTCCAAGATTATCATCTCAAAATGGAACCAAACAAGGAGCAATGCGATTTATACTCGGGTGACTATAATGACAAAAAGAAATCTAGCAAGAGGGTGTTGCCTGAACATTTGCGCACTAGGAAATTAAGACTCAAGGCGGGCCCGATCCATTGCATGGTCTGCGATCGCATCCTGCCATGTCACTCCGCATTTGAGCTTCACATGCGAACACACACTAAAGAGAGACCGTTCAGCTgtgatttatgtaaaaaaagtttttctaaTAAATATTCTATGAAAGTACATATTCAAAACCATTATGGAATAAAGGAGactaaaaaatgtatgaaagtAGAAGACGGGAGAACGAGGCGGCGTAAACAAGGACCATTCCAGTGCGTGGTCTGTGGCAGGATGAGTGCGAGTCACTCCGCACTGGAGAACCATATGCGTACCCACACTGGGGAAAAGCCTTTTGCCTGTGAACAGTGCGGAGCCAAGTATAGGCTCAAAGGTACGCTGACGAGGCACATGCAGGGCTCGCATCCTGAGACCCATCCGAGTCCGCGGTACACATGTGAGCACTGCGGGAAGACATTCCGAGCCAAGACCAACATCATCACCCACATGCGTGTGCATACTGGAGCCAAGCCGTACCCGTGCCCGTACTGCCCACAGAGGTTCCGGCAGGTGTCGTCGTTAATCCGACACCGCCGACGCCACACTGGCGAGCGCCCTTACGCCTGTGAGACGTGCGGCAAACGCTTCCTAGACCGAACTCTACTGAACAAGCACCGGAGTGTGCACAGCTCCGAGAAGAAGTTCAGCTGCTCGTTATGCCACAAGACGTTCAAGAGCAAAGGTTCGCTGAAGGTACATACAGACGGGCACAGCAAGTCAAAGCTGTGGATCTGTAGTTTCTGCGGGATGACATTTAATTTCAAGGGGAACTTGAAGACTCATATCGGCAGGAAGCATTCTGAGCGGTCGGGGACTTGTCCAGTCTGCGACAAAGCGTTCGGGGACGTGGCGGCGCATATGAGGGTTCACACAGGGGAGCGGCCTTATTCTTGCAAGCTTTGCTCGCGGAGCTACGCCTCGCCGCGCAGCCTGTCGCACCACATCGGGTTCAAACACCGCGACGCCGGCAAGTTCAAGTGCGCGCTGGAAGAATGCCCCGAGTCGTTCCCAACTGCCGCCATGCTGGAGTTCCACGTGTTAAAACACCACACACAGACGACTCCGTACGTGTGCCCACATTGCGCGCGCGGCTTCTTACGCCCCTGTGACCTCTCGCGACATCTCAAACTAAACCATATGGACACACAGACTCAAGTTAAGTCCCAGTTCCTCAAAGTCGTCGATAGAGACACTTGA
- Protein Sequence
- MEFKICRVCLDRTATISVFDRRDEVQYCAKIMKCANVVITEGDGFPDAICEGCAGDLAVCYEFAARCEASDKALRCLDLLQTAPEPDAKPHDSIKQELKPDVDSAFHSDLFHSFLDQDLPDHEDLQDYHLKMEPNKEQCDLYSGDYNDKKKSSKRVLPEHLRTRKLRLKAGPIHCMVCDRILPCHSAFELHMRTHTKERPFSCDLCKKSFSNKYSMKVHIQNHYGIKETKKCMKVEDGRTRRRKQGPFQCVVCGRMSASHSALENHMRTHTGEKPFACEQCGAKYRLKGTLTRHMQGSHPETHPSPRYTCEHCGKTFRAKTNIITHMRVHTGAKPYPCPYCPQRFRQVSSLIRHRRRHTGERPYACETCGKRFLDRTLLNKHRSVHSSEKKFSCSLCHKTFKSKGSLKVHTDGHSKSKLWICSFCGMTFNFKGNLKTHIGRKHSERSGTCPVCDKAFGDVAAHMRVHTGERPYSCKLCSRSYASPRSLSHHIGFKHRDAGKFKCALEECPESFPTAAMLEFHVLKHHTQTTPYVCPHCARGFLRPCDLSRHLKLNHMDTQTQVKSQFLKVVDRDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -