Cpus042590.1
Basic Information
- Insect
- Cabera pusaria
- Gene Symbol
- -
- Assembly
- GCA_954871355.1
- Location
- OX940913.1:12002275-12008992[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.066 9.5 8.3 0.1 3 22 80 99 78 101 0.89 2 24 0.24 34 6.5 0.0 2 23 124 146 123 146 0.94 3 24 0.00018 0.026 16.4 0.4 1 23 151 174 151 174 0.94 4 24 0.13 20 7.3 7.2 1 23 177 200 177 200 0.96 5 24 0.012 1.7 10.6 2.4 2 23 237 259 236 259 0.96 6 24 0.081 12 8.0 5.1 1 23 264 286 264 286 0.98 7 24 1.6e-06 0.00023 22.8 1.2 1 23 292 314 292 314 0.98 8 24 0.00014 0.02 16.7 2.4 1 23 446 468 446 468 0.98 9 24 3e-05 0.0043 18.8 0.2 3 23 474 494 472 494 0.97 10 24 0.0029 0.41 12.6 1.6 2 23 501 523 500 523 0.96 11 24 0.0037 0.54 12.2 0.3 1 23 528 551 528 551 0.92 12 24 9.4e-06 0.0014 20.4 3.3 1 23 557 580 557 580 0.98 13 24 0.00019 0.027 16.3 0.6 2 23 587 608 586 608 0.96 14 24 4.5e-05 0.0065 18.3 2.1 1 23 614 636 614 636 0.98 15 24 0.00015 0.021 16.6 1.7 1 23 642 665 642 665 0.96 16 24 0.056 8 8.5 0.9 1 23 818 840 818 840 0.98 17 24 5.3 7.7e+02 2.3 0.0 2 23 866 888 865 888 0.90 18 24 0.53 77 5.4 0.1 2 23 911 933 910 933 0.94 19 24 0.002 0.3 13.0 1.4 3 23 941 962 940 962 0.97 20 24 7.9e-05 0.011 17.5 0.7 3 23 969 990 968 990 0.97 21 24 0.13 18 7.4 3.2 1 23 996 1019 996 1019 0.97 22 24 0.0011 0.16 13.9 2.2 2 23 1026 1048 1025 1048 0.95 23 24 0.025 3.6 9.6 1.3 1 23 1054 1076 1054 1076 0.94 24 24 0.02 2.9 9.9 0.6 1 23 1082 1105 1082 1105 0.89
Sequence Information
- Coding Sequence
- ATGGACCGATTGGCCAGTGTCCGGAGGAACATAGCCACCGTGCTTCGATACTCTAACATCATCCCCTTTAACTGGAATACCAAAGGCTACAGATGTATCTTCTGCTACAAACTCATTAAAGATTGCAAAGATCTTAAAACCCATACGACTGAACATATCCCAGTAGACTTTGACAGCTTTGTCAAAAAGATTATATCCAAGGATGTTCCAATCAAAGTAGACGTAACTGAAATTGCTTGCAAAATCTGCTCTAACCCATTCTCATCTTTGAATGATTTGGTCGATCATATCGTCGACAAACATAAAGAAGAATACGACACGTCTGTAGGAGTATGTTTCTTCCCTTTTATCTTGAAGGAAGAATCTATAGAATGCGTTTTGTGTGAAGAGAGCTATGACAACATTGCGAGCTTAATCGGACATATGTACAGGCTACATATTAACCATTCCTTTATATGTCAAATATGTGGTGTAAGTTTCAAAGACCAAACCCGCATGCGGAGACATATCGCAAACAATCACGTTGTCCATAAATGCAGAACTTGCTCAAAAACTTTCGATTCTCTCCACAAACTCGCAATGCATAAACAGAAATTCCACGGCAAAGTAAAGCTTTATTCGTGCAGTTTATGCAGTGACAAGTTTTTGAACACGTATCAGGTAGAAGTCCACATGGGAAAGGTTCATAACGTCGAGAAATATAGGATCAAATGTGAACACTGTCCCAAAATTTGCGTGACTAAAGGAGCCATGCGTTTGCACAAACAAAGCTTACATTCCGAACTAAAGCATAGATGCGATATGTGCGATTATACGTGCGGTATAAAATGGCAGTTAAAACTTCACAAACGCAAGCATTTCGGCGTGAAAGAATACTCTTGCAGTATTTGCGAGAGGTATTTTGGAAGATCCAGCAATTTGAGAACGCACATGAAAGTGCATACGGgGCCCGTTACAAAACAGTCGCCAAAAAAGAAACCGAAATATACTGACGCGCGATATAACGCGGGAATTCTATTGGAGTGCTCCAATATGTGCCCGTTTACGTATCATCACAACACTTTCGGCTGCGCGTATTGTAAGTTTAAGTCTCCAGAATTCACCACAATCAAAACTCACACCAAAAGACACCCGGACAAATACAAATCAATGTTTCTGCGTAAAATGACTTCGCAATCTGTATGCAAAGCTGACGTGACTAACTTGAAATGCGTTCTCTGTAAAACAAGCATGACTGATATTCCGATGCTTTTCGAACATCTTATAGAGGAGCACGGCAAGCCTTTGCTAAAGGATTGCAATCCTGGGATTATACCTTATTTGTTAGAAGATGGTTTCAAATGCGCTGACTGCGGATTAACTTTTGagaaatataaaaacttatgcATCCACGTGAACAAGCACTATCCATTCGTGATATGTGTTGATTGCGGTCAAGGTTTCGTCACCCAATCGCATCTGAACTTGCACGCCCAAACGCATAATAGAAAAACTATGATCAAATGCACCGAATGTAAAGAAACTTTCTCCACCTTGTACCGTAGACGAACACATATGTTGTCTGAACacaatataggtatatataaatgCCCCTACTGCAACGAAGGATTTAAATATTACGCTGATCGATCAGCACACTTGACAGAAGTTCACGATATAAACACTGAATACTCGTGCCATATTTGTACCAAAAACTTCAAGACTGCGTCTTCTAGGGCGAGGCATATGCGCCGTGTTCATCTTAAAGATAGACCTATATCCTGCTCACTTTGCGATGAAAAGTTCTTCAATAATGACAGCTTGAAAGACCATATGGTTAAGCATGACAGTGCGAGAAGACACCAGTGTACTGTGTGTGAGAAATCGTATGCACGGAAGAAGACTTTAGTAGACCATATGAGTAGTCACAATAGCGATGGGAAATTTCCCTGCTCGTATTGTAACAGTACTTTTATGCAGAAAGCCACTCTTAAAACCCACATGAAGTTACAACATGATGAGGTGGAAGATTTAGATGGGTCCACCACTAAAATAGAGACGTCAATAGCAAACCCGAAATACAGCGACGCGAGACATAACGCCGCTATTATATTGGAGTGTTCCAACGTTACTCCTTTCAAGTATCATAGTAACACATTCGGTTGTCCCTACTGTAACTTCAAATCACCAGATTTTAGGATCATCAAAAACCATACAAAAGACCACACTGGAGAAACTAGAGGTGGCCAGAAAGTAGCACCATTACCCAAAACCAGGACGTCCGTCATAAAGTTTAACAATTCCCGGAATCGTGAGATGACGGAGCGTGACTTTGCTCCTCCGGTCAACATCCTCCAAAAGAAGGGGCCGAAACGTCTAACAGCTAAAGAGAAGAGGAATATAATGATACAAAATGTTACGCAAGTCTTAACTAAGACCACGGTGATGCCTTTTAGATGGCTGAAGAGTTCCTATCGCTGTTTTTACTGCTATGATATATTCCAAGAATCCTCAGACCTCAAAGAACACCAAGCGTCTCACACCGGAGATGAAATTAAAGAGAAGACTATGAGAAACTATTGGGAGCCTGTTGTTTATGTCGATGTTGTAGACATGACTTGCAAACTTTGCAACGCAAAAATACCAGATCTTTACGATATGATCGACCATTTAGAGGCCAATCATGGCGTGACTTACAACAAAGATATAGGCCAGTGTATGGTCGCATTCAAACTCGACAATTTCAACGTCAGCTGCTTAATCTGTGGCGCCAATTTCTTCACTTTTGGACCTCTGCTCTACCACACTAATAAAGACCATAAAGGATCTTCGGCCATCCTTTGCGATATCTGCGGGCAAAACTTTAAGCATTTTAACTTATTGCGTCTCCACGTAAAGAGCGTTCACGAGAACACTGGTCTACTATGCCCTGATTGCGGTGAGAAGTTTGATTCCAAGCCCAAGTTGAAAACCCACCAAAAGAACCAGCACGACTTGGAAAAGAAGTACAAGTGTTTGGTCTGCACGCAAATGTTTATGAGTCATTACAAGCGATCGAGGCACATGGCGTCGGAGCATAAAAATAGACAGGAGATCAAATGCTTGCACTGTCCTAAAACCTTCGTTTTCCGCAGTATGATGATGACACATTTAAGAGACACGCATCTGAAGGTACGCAATCACGTTTGCGGCGTTTGTGGTTGGAAAGCTTTCAACAGCAACAGATTGAAGAATCACATGTATAAGCACAGTGGAGAGAAGAACTTCCAATGCGATGCATGCGATAAGGCGTTTACAACTAAGAAGATAATGAGAGCACATTTCGCGAGGATGCATAAAGCGCCAGAGACGACTACCATCATAGCATATGTTAGCAATCCGTATGGAGCGCAGTGA
- Protein Sequence
- MDRLASVRRNIATVLRYSNIIPFNWNTKGYRCIFCYKLIKDCKDLKTHTTEHIPVDFDSFVKKIISKDVPIKVDVTEIACKICSNPFSSLNDLVDHIVDKHKEEYDTSVGVCFFPFILKEESIECVLCEESYDNIASLIGHMYRLHINHSFICQICGVSFKDQTRMRRHIANNHVVHKCRTCSKTFDSLHKLAMHKQKFHGKVKLYSCSLCSDKFLNTYQVEVHMGKVHNVEKYRIKCEHCPKICVTKGAMRLHKQSLHSELKHRCDMCDYTCGIKWQLKLHKRKHFGVKEYSCSICERYFGRSSNLRTHMKVHTGPVTKQSPKKKPKYTDARYNAGILLECSNMCPFTYHHNTFGCAYCKFKSPEFTTIKTHTKRHPDKYKSMFLRKMTSQSVCKADVTNLKCVLCKTSMTDIPMLFEHLIEEHGKPLLKDCNPGIIPYLLEDGFKCADCGLTFEKYKNLCIHVNKHYPFVICVDCGQGFVTQSHLNLHAQTHNRKTMIKCTECKETFSTLYRRRTHMLSEHNIGIYKCPYCNEGFKYYADRSAHLTEVHDINTEYSCHICTKNFKTASSRARHMRRVHLKDRPISCSLCDEKFFNNDSLKDHMVKHDSARRHQCTVCEKSYARKKTLVDHMSSHNSDGKFPCSYCNSTFMQKATLKTHMKLQHDEVEDLDGSTTKIETSIANPKYSDARHNAAIILECSNVTPFKYHSNTFGCPYCNFKSPDFRIIKNHTKDHTGETRGGQKVAPLPKTRTSVIKFNNSRNREMTERDFAPPVNILQKKGPKRLTAKEKRNIMIQNVTQVLTKTTVMPFRWLKSSYRCFYCYDIFQESSDLKEHQASHTGDEIKEKTMRNYWEPVVYVDVVDMTCKLCNAKIPDLYDMIDHLEANHGVTYNKDIGQCMVAFKLDNFNVSCLICGANFFTFGPLLYHTNKDHKGSSAILCDICGQNFKHFNLLRLHVKSVHENTGLLCPDCGEKFDSKPKLKTHQKNQHDLEKKYKCLVCTQMFMSHYKRSRHMASEHKNRQEIKCLHCPKTFVFRSMMMTHLRDTHLKVRNHVCGVCGWKAFNSNRLKNHMYKHSGEKNFQCDACDKAFTTKKIMRAHFARMHKAPETTTIIAYVSNPYGAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -