Cpus041347.1
Basic Information
- Insect
- Cabera pusaria
- Gene Symbol
- -
- Assembly
- GCA_954871355.1
- Location
- OX940912.1:16709141-16711462[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.2e-05 0.0017 20.1 4.1 1 23 6 29 6 29 0.95 2 19 0.00072 0.1 14.5 0.3 2 23 35 57 34 57 0.95 3 19 1.3e-05 0.0019 19.9 0.5 2 23 66 88 66 88 0.96 4 19 9.1e-06 0.0013 20.4 1.6 2 23 97 119 96 119 0.94 5 19 0.0002 0.029 16.2 4.1 2 23 127 149 126 149 0.95 6 19 4.4e-06 0.00063 21.5 2.4 2 23 155 177 154 177 0.96 7 19 9.3e-07 0.00013 23.6 4.7 1 23 183 206 183 206 0.98 8 19 0.0001 0.015 17.1 1.4 2 23 242 264 241 264 0.96 9 19 0.002 0.3 13.0 1.4 1 23 293 316 293 316 0.98 10 19 0.13 18 7.4 1.0 2 21 324 343 323 344 0.93 11 19 0.016 2.3 10.3 2.2 2 23 353 375 353 375 0.95 12 19 0.0028 0.4 12.6 5.5 1 23 399 422 399 422 0.97 13 19 0.00028 0.04 15.8 0.9 2 23 429 451 428 451 0.96 14 19 6.3e-06 0.00091 21.0 1.7 2 23 458 480 457 480 0.94 15 19 0.0072 1 11.3 2.2 1 23 486 509 486 509 0.97 16 19 0.18 26 6.9 7.1 2 23 517 539 517 539 0.95 17 19 9.3e-05 0.013 17.3 0.2 1 23 546 569 546 569 0.96 18 19 0.04 5.7 9.0 1.4 1 23 576 599 576 599 0.90 19 19 0.0059 0.85 11.6 3.5 2 23 613 635 613 635 0.96
Sequence Information
- Coding Sequence
- ATGTCGCACGGAGATTACGTTTGCGACTTTTGCAGTCGCTCGTTCACGAGAAAATACAACTTGCAAACTCATATAGAAAATTGTCACGAAACTGCCTCATGTTACTGTGATATTTGTGATCAGAAATTCGGCAGCCCCGCTGGTTTACAGCTCCACTTATCTCGAGGGCACAACAGATACGACCAACCATTCCCGGAATGCGACATATGCGGCCGTATTTTTACTCGCAAACAAAACATCACGTCTCACATGTTTACTGTGCACTTACAAGGCGCTGGACCTCAGATAAGATGTAGAAGTTGCGGTAAAACGTTCACCACTGAACGGAATCTGAAAAGGCAtgtgaaactgttgcataaccCTGATGTCGAGCAACTATCGTGCGACGAATGTAACAGGACATTTAAAACTAAACATGCGTTGTTATCTCACACCCATACCGGCCATATCGAAAAAGGAATCAGATGCCATATGTGTGAGAAAGTTTACACGAATAACCGAAATCTTAAACGACATATCGAGATGTTTCACGGTGAAAAAGAAGATCACAGGTGCCATATCTGTCCTAAAGTCTACACCTCCAATCaaagtttgagacgtcataTAAGAACAACCCATAATTCTGACGAGGACAGCTTACAATGCGAATTGAAATTGATAGATGCGGAAAACGTTGACTGGCATAGCGAGGAATCCATCGAGTCTGACGATTTCAACACAATCACTTGTGATACGTGCAATAGAGCGTTTCACGACGAATCTCTCTTGCGTCAACATATCAAGAAAGATCACTCTTTCGAAGCTTTCTACGATTACTGCCGTAGTTTCCTCCAAAAACAATCAAATAGAGACCAACCTGCGATAAAACAAAACGTCTACAAATGCGAATTCTGTTTTACGGCCTATTTCAACGTTTACGAGCTCAAAGATCACATGAAAGTTAATCACGACACTGAATACAACTTGTCGACCTGCAATGTGTGTTTTAACAAGTTTTATAGCAAAGAAACATTGTTTGAACACAAAAAGATATGCCTGCCTCCACACGACGTGAACTCGTGCAGTCATTGCGACAAGCTCTTCACGGACGTGTCCAGCTTAGAGTTCCACACGAGGATCTTCCATCCGCAAGCACAACTGGCGGATTCTAATATAACTTCCACAAAACAAGACGAAGTGTCCGATATTAATTCTTTTAAATGTGAACATTGTGACCGCATTTACTACAGCGACAGATCTCTGAAACATCACATCAAACTGAAGCACACGACCGACGAAGCGATGGAATGCGTGTACTGCAATAAAATTTGCAACAACAAGTACTACTTAGCGTCTCATATAAAAATCGTTCACAGCGTCGTCGATCTATCGAAGTGTGACTATTGCGACAAAGTGTTCAAATCGAAGCGTAATATACGCAGACATATAGAGTACACGCACATGGGCATGCAACGATACAAGTGCATCGAATGTGAAACTCTATTCAAAGAAAAGAGAAGTCTCCGCAAACACGTAAGGACGAAGCATCCAAACTCAACTACTTTCCCGCAGTGCCATATCTGTCATAAGAGATTCGAGTCTGCCAAGTCGTGCAAGATACATTTGAAGCTTCTACACTCGTTCAACATGAACACGTATCCCTGCGATCTATGCTCCGTCTCGTTCAGCTCTAAAGAAGCTTTAAAGATACATTTGGAGTCCAAACATTTAGCGGAAGACGAGATTTACAAATGCGAGGAATGCAATCTAGTCTTTAAAGGTCCCCTGAAATTTGAAGAGCATAACGAATCTTGCCACGGGACTGTCGACACTGTCACTAGACACAAGTCCCTGCCTCGTTGTTTGCTTTGTATGAAGGACTTCAGCACGCGGAAAACGCTCAGGCGTCATATAAAGAAGTTCCATGAAGAATTTCAGCCAGAGGAGCTCGCTAATTTCGGTTGTAGACGACAAGTCTTCAACGTCGATTGCGCGGAATGCCTCAAAAACTTTGCCGACGACCTATACTTCAATACCTACGTCTCCGTCAAACATATTAAAGACGCTATAGTCTTCAAATGTGAAATTTGTATGTCCTCATATACGCCCCTAGAATTCGCTATACAAAGGCACAAGGTGCTGAATTCAGATGCGACGAAGTCTAAGTTGATATTGAGCGACCTTTGCACGACGCAGATGAGTGAAGATGAAGCTAGTTACTCGGGATTTGGTTCCCTTCAGGAGTATATGGAGCCAGAAAGTACGACGGCCGATGTTAGAATCGAGCCTGAATACTATGAGACATATTCTGGTGAAGTCAAGGCCGAGCCTGAGTCACCATAA
- Protein Sequence
- MSHGDYVCDFCSRSFTRKYNLQTHIENCHETASCYCDICDQKFGSPAGLQLHLSRGHNRYDQPFPECDICGRIFTRKQNITSHMFTVHLQGAGPQIRCRSCGKTFTTERNLKRHVKLLHNPDVEQLSCDECNRTFKTKHALLSHTHTGHIEKGIRCHMCEKVYTNNRNLKRHIEMFHGEKEDHRCHICPKVYTSNQSLRRHIRTTHNSDEDSLQCELKLIDAENVDWHSEESIESDDFNTITCDTCNRAFHDESLLRQHIKKDHSFEAFYDYCRSFLQKQSNRDQPAIKQNVYKCEFCFTAYFNVYELKDHMKVNHDTEYNLSTCNVCFNKFYSKETLFEHKKICLPPHDVNSCSHCDKLFTDVSSLEFHTRIFHPQAQLADSNITSTKQDEVSDINSFKCEHCDRIYYSDRSLKHHIKLKHTTDEAMECVYCNKICNNKYYLASHIKIVHSVVDLSKCDYCDKVFKSKRNIRRHIEYTHMGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTTFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFSSKEALKIHLESKHLAEDEIYKCEECNLVFKGPLKFEEHNESCHGTVDTVTRHKSLPRCLLCMKDFSTRKTLRRHIKKFHEEFQPEELANFGCRRQVFNVDCAECLKNFADDLYFNTYVSVKHIKDAIVFKCEICMSSYTPLEFAIQRHKVLNSDATKSKLILSDLCTTQMSEDEASYSGFGSLQEYMEPESTTADVRIEPEYYETYSGEVKAEPESP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -