Cpus031261.1
Basic Information
- Insect
- Cabera pusaria
- Gene Symbol
- -
- Assembly
- GCA_954871355.1
- Location
- OX940904.1:13257618-13258043[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-12 3.3e-09 37.7 0.0 1 34 8 40 8 47 0.94 2 2 0.053 87 4.4 0.0 22 32 106 116 106 120 0.96
Sequence Information
- Coding Sequence
- ATGGCACCGATGAAAAACTATACCCCAGACCAAATGGGCCGTGCTCTGGAGGCAGTAAGAAAAGGGCAGAGTGTAAGCTCTGCAGCCAAAAAATATGGGGTACCTAGAATAACTTTACATAATAAGAGCACTGGTAAGAGTCCAGCAGTATGCTCCATGGGCCCATCGTCAGTTTTATCAAAGGATGAAGAGTCTATTTTGATTGAATGGTTGTTTGCTATGTCATCAAGGCACTGTCCAGTGGCAAAAGAACAACTACTTGaaactcgcggcaaaatgcTCCTGCGCACTGATTGGCCGGCGCCTCCTACAATCGCCGCCAGTCGCCATGGAGTCGCGAAATCAACACAATTACTGATGGAAGGCCAGGGCGAAAATGGTATCAGGCGTTTCTTACACGACACCCTGAAGTGTCTGAGAAGCTAG
- Protein Sequence
- MAPMKNYTPDQMGRALEAVRKGQSVSSAAKKYGVPRITLHNKSTGKSPAVCSMGPSSVLSKDEESILIEWLFAMSSRHCPVAKEQLLETRGKMLLRTDWPAPPTIAASRHGVAKSTQLLMEGQGENGIRRFLHDTLKCLRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -