Cpus023024.2
Basic Information
- Insect
- Cabera pusaria
- Gene Symbol
- -
- Assembly
- GCA_954871355.1
- Location
- OX940898.1:26351012-26363217[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-10 1.8e-07 32.2 0.0 4 39 172 208 171 212 0.90 2 4 3.9e-11 6.4e-08 33.6 0.3 2 39 224 261 223 264 0.92 3 4 2.3e-15 3.8e-12 47.1 0.2 2 45 279 323 278 323 0.96 4 4 6.3e-18 1e-14 55.3 0.0 1 41 330 371 330 374 0.94
Sequence Information
- Coding Sequence
- ATGCCTGGAAACGGACCGTTCCAGGTTAAATGCGAACCTTCCGACGAAGAAGATAGTAGCCCGCAGTTGTCTCACGTATTTCTTAGTAATCATAAGgttATCCCTGAATACCACTCTGTGAAAGTAGAAACGATTGGACATAATGAGGAAAGCACTTCATCTGATTTGCTACAGCATTTACAGTCGTCAAGCGGCTTGGAAGAATTGGCACCGCTGGCGCCAGCGGCCCCCGCGGCTACTCCAGTGTGCGTGAAACAGGAGCCGGTGGACACGCCCGCCTTGTGCCCCATGCTCGAGATACTTGAGCCGGCCCCGCATGCTACGTTGCAGGGAAGTTCATTGTTAGAGCGGCATATGGCGATGCTGAATTCGACGGAAGAGCTCAATTCCGGCAACTTTACACCTCTACTCGTTAAAGACGAACCTTCTTCGGAAAACGCAGAACTGGAGATGAGCGAGTGCCGCGAGATGGAGCCGGCAGCTCGGGGCAGTCCTAAGAGCTGGACGCAGCTGGACATGGACAGTGCACTGGACGCGCTGCGGAACCATCACATGAGCTTGACCAAGGCTTCAGCGACATACGGCATCCCATCGACGACTCTCTGGCAGCGCGCGCACCGGCTCGGCATCGACACACCCAAGAAGGAGGGCTCCACTAAGTCATGGTCGGAGGCTGACCTCCGCGGGGCCCTGCATGCGCTGCGGGCTGGTGCTATATCCGCTAACAAGGCCAGCAAGGCGTATgGTATACCAAGCAGCACCCTGTACAAGATAGCCCGTCGCGAGGGCATCCGCCTGGCGGCTCCGTTCAACGCGGCACCGGTGTCGTGGCGGCGCGGCGACCTGACGCGCGCTCTCGCGGCCATACGCGCCGGCGCCGCCTCCGTGCAGCGAGCCGCCGCGCAGTACGGAATACCCACCGGCACTCTATACGGGCGATGCAAACGTGAAGGCATAGAACTATCCCGATCCAACCCAACGCCGTGGTCAGAAGATGCCATGGGTGAAGCTCTGGAAGCAGTCAGAGTGGGTCAGATGTCTATAAACCAAGCAGCAATCCACTACAACCTGCCGTACTCGTCTCTGTACGGCCGGTTCAAGAGGTGCAAGTACCTAGCGCAGTCTCAACAAATACCACAACAGGAAGTGACAAGCAACGCTGAAATAGCGTCAAGTCAACAAGAGATGCCTTACTACCACCAGGCTCCTGCCCAAGAGCCAGATCACCGACAACATCAATACACGCACGAATATGTTGCCAACACATTGACGCAGGACCCGTATGCAGGGCCGGCGATGTATTACAACCACAACTTTAACAGCATCGCTACCAGCTGA
- Protein Sequence
- MPGNGPFQVKCEPSDEEDSSPQLSHVFLSNHKVIPEYHSVKVETIGHNEESTSSDLLQHLQSSSGLEELAPLAPAAPAATPVCVKQEPVDTPALCPMLEILEPAPHATLQGSSLLERHMAMLNSTEELNSGNFTPLLVKDEPSSENAELEMSECREMEPAARGSPKSWTQLDMDSALDALRNHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSTKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLTRALAAIRAGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYLAQSQQIPQQEVTSNAEIASSQQEMPYYHQAPAQEPDHRQHQYTHEYVANTLTQDPYAGPAMYYNHNFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -