Bhed024035.1
Basic Information
- Insect
- Byasa hedistus
- Gene Symbol
- RTase_1
- Assembly
- GCA_029286795.1
- Location
- JAGSMW010000039.1:865662-874608[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.8 3e+02 3.0 0.9 1 23 1656 1679 1656 1679 0.93 2 9 1.3 1.3e+02 4.1 2.6 2 23 1704 1726 1703 1726 0.96 3 9 0.0038 0.4 12.0 4.1 1 23 1745 1767 1745 1767 0.98 4 9 0.00021 0.022 16.0 1.9 2 23 1772 1793 1771 1793 0.96 5 9 0.00065 0.069 14.4 0.4 1 23 1798 1821 1798 1821 0.96 6 9 3.5 3.7e+02 2.7 0.9 2 23 1827 1849 1826 1849 0.93 7 9 0.0036 0.38 12.1 3.3 1 23 1855 1878 1855 1878 0.97 8 9 3.7e-05 0.0039 18.3 2.4 2 23 1884 1905 1883 1905 0.98 9 9 0.00046 0.049 14.9 4.1 1 23 1911 1933 1911 1933 0.99
Sequence Information
- Coding Sequence
- ATGGATGTAGACGATGGTGGCGGGGAGGCATCGGATAAGACAGGCGATCCGATGCCTGCAAAGCGTAAATTGAGTCATCCTACCCCCTCaactctgaaaaaaaaaattaacacccCTGATCATCCTTCCGCGTCTTATCAAGATGTTTTCACTAGTCCATcctttgaaaacaaaaaaatgtatggaGACAAGGACCAAGGACCCTACATCGTCCACTTGAGTAGAACTGAACCGGACCCAGCAAGTGGgtattcaataaaatcaattaaaataggACAATTCTTGACAAAAAACAGGATAGCCAACATCGTTAAGCAAGGCGTTTCTAATATAGGGCGAAATAGAGTAGCAATTGAATTTAAACACGCTAAAGATGCGAACAATTTCGTTGAATCACCTCTGttagaaaaatctaaattgaCCGCGGTTATACCTGCATTTAATGTAACCAGAATAGGCGTAATTAGAGGCGTACCAACAGATATCTCGATGGAAGATCTGGTGGAGGAATCAGAACTCCCTCCCACATGTGGCAAAATTATCAAAGCCCGAAGAATGCACCGAAAAAATAAACGAGGTGATGAAGTGGAGTGGATACCCACTCAAACAGTGGTGATCACTCTCTCCGGTCAAATCCTCCCATCTcacatatattgtttttacacCTCCATTCCAGTAGAAACATACATCCTCCCTACCATCCAATGTATGAATTGCTGCCGATTTGGTCATATTAAGACGCAGTGCAGATCCAAGCCTCGCTGCTATTCATGCTCCAAGGATCACTCCGGTGACAAATGCCCATCAAACTCCCcaacatgtttattttgttcCGCTAACCATTCTGCCATAGACAAATCCTGCCCAGAACACTCCCGCCAAAAGGCTATTAAAGTTGTAATGTCCCAGGAGAATATTTCCTATCTTGCGGCTTCTGCCAGATTCCCTGCTGTCAGAAGACCCTATTCAGATATCTCTTCCCAAAATAAAACCGCCCCTCCACTTCACAGTAGCCTTCCACCTACTACTCCTACATCTCTCACAACAtctcataaaaaaacaatttatgttaGACAAAAGCATCCTCTTCCTAATCTTCAGGCAGGATATGACAAAAAAGCTCATGAAAACATTACTTGCACCCCTTTATCCTTTCCAAATGGCCACTCCCTTCATTGCCAAATATCAGCTGTCACGGAGTCCTGGCTGAAGCCAGGATCCCATTTCAGAGTCCCAGACTACAGATGTGTCCGGGATGACAGAAGAGATGGCTATGCTGgcacaattattttatgcaaAAACTCTGTTCCTTTTTCAATTACCCCCCTTCCTCCCTTACATGAAAACATTAATGCTGTATCAATTAAAGTCCTGGACATTCAAATTATATCTCTATACCTTCCCCACCCATCTTCAGCTTGCATCCCTGAGATAAACCTTCTTCTCTCCTCTATCCCCCCTCCCCTCATAGTTGCTGGAGATTTCAATAGTCAACATACAATGTGGGGCTCGCATAGATGCGACCAATTCTCATACATGCTTGTCGAAGTTTTCAACGAATTCAACTTATGTGTTTTAAATGACGGTTCTCCAACTCGAAGAGTTTTCCCCTCTCAAAACCCCCTTTCAGCTCCTGATCTGTCACTCTGCTCACCAACACTTGCTCCTTCTGTTTCCTGGCAGGTCCTGCCTAGTACTTATGGCAGTGACCACTTCCCAATCTTGCTTTCCATTTCTGATAGATGTGTCCCCTCACAAACCTATCTCCCTCCTCTCCTCAAGTACAGAACTGCTTCAGCTAACTGGGAGTTATTTAAATCAGAGACTGAGAATAAAGCCCTAAATCTTCAAGCAGTTACTccattcaatattaaaacaaccTACTGTGGATTTACCTCTTTACTAACTCAAGCGGCTGACTTATCTATCCCGCTTAAAAGaccaaaacagaaaaaaacatCTTCGCCTCCGTGGTGGGATGCCGAATGCTCGAAAATAGTATCACAAAGAAAAAAAGCAGAAAAGTTGTATTCTACATGTATGTCCTCCCAAAACTTTATCTCTTATCAGAACATAGCAGCCCAATGCAGAAGATTGCTGTCGAACAAGAAAAAACTTGGATGGCTCTCGTTTTGCAAAAACCTTTCACCCCGCTCCCCTTCCTCCTTGGTGTGGAAGAACATCCGCCGCTTTAGAGGTTCCCAAAATAATGAACCTAACATTCATTATGATTCCCAAACATGggttacaaaattttgtgaCAATCTCGCTCCTCCTTGGGTGCCTTGCGAGATTGAGTGCGTTACCTCGCTCAATTTGGTAGATACCGATAAGAGTAGTGATTCAGAATTTAATGCTCCTTTCTCACAATCGGAATTAAAATTAGCCCTTACCCACCTTAAAGACTCCTCCCCTGGAGCTGATGGCATCCCATACTCTTTTATAGTCCAATCTGGCCCCAGTGCTCAAAATTACTTTCTagacattataaataacatatttctaAGTGGAGAAATCCCAGAACAATGGAAAAAACATCTTATCATTCCCATTTTAAAACCAGGGAAAGATCCCTCTTCTCCGTCTAGCTATCGCCCAATAGCCTTATCATCCTCTCTCTCTAAGGTAATGGAACACCTAGTCAAAAATAGATTGGAGTGGTTCTTAGAAAATCGCCAAATTCTATCAGCATCTCAATTTGGATTCCGCAAGGGATTCAGCACAATGGATAGTCTTGGCATCCTCACTACAGACATTCGATTAGCATTCTCCAACCAAAAATCAGTTGCCGCAGTTTTCCTGGACATTTGTTCGGCCTATGACAATGTTATTCTTCCGCTGCTCAGGCAAAAGATGCTTCAGCTGAGTATCCCCGCGAGGATAACTAATttcataatgaatttattttccaaccggcaaatagtcaCACGTGTTAAAGGAGACTTCTTGCATCCTAGATGTGTCTGGAAAGGCCTGCCCCAAGGGTCTGTGCTAAGCCCTCTTCTATATAATCTGTACACCTACGACCTGCACATGTCAGTGGACTACATAGCTAGCATCCTACAATATGCTGATGACCTGGTAATCTATGTGTCGGACCCTTCCATTGCGGAGGCTACTGCCCGCCTTTCTCATGCGACTAATTACTTAAATGGCTGGTTAACTGACCATGGCCTGTCATTGTCTCCCGCTAAAAGCAGTGTTGTAATTTTCACCAGAAAAAGGTATATCCCCAACTTCTCTATTTCCATCGAAGGACAGAGCATCCCTAaagatgataaaataaaattcttggGAGTCATCCTGGACTCTAAGCTAACTGGAATCCCTCACCTTTCTTATATATCAGACAAATGTGAAAAAAACCTTAACATTCTGAGGGCCATTTCAGGTGTCTGGTGGGGTGCCCACCCCTACACTCAAAAACTTCTCTATAACGCATTAGTCCGCAGCCATTTTGACTATGGTTCCTTTCTATTGGAACCATGTAACAAAGCTGCTCTCATCgctcttaataaaattcagaATAAATGCCTTCGACTAGTCACAGGCAGTATGAAATCATCCCCTGTAAATGCTCTGCAGGTAGAATGTGCTGAAGCACCTCTTTTCCTTCGCAGACAATTTATCTCTGACAGATTCTTTTTCAAAGCTGCACAATTACACAATCATCCTCTTTTCTCGAAATTGCAAATGCTCTCCAAATCCGTTAAGCAATCGTCATACTGGTCTTTTAAGGATGCTCCTTGTGTCCTTAAAAGTTAccacaaatttattaacattagttCCCCTATATCCCAAACTGATAAGAATCCCCTTTTCCTCATCCCTTACGAGGCCTTAACATTTGTTCCCTATGTATCCTTGGATttcaacattaataaaatctctGCAGATGCAGACAGTGAATTGAAACTTGCGCTATCCAATAAGTGGCCAGGTTGGCTGACCATGTACACCGATGCATCAAAATCATCCGACAAGGGCTGCGTAGGCTTTGCTATCTGGATCCCTCAGTACAGAAttgtacttaaatataaacatacccAACACTCATCTGTTTTCTCAGGTGAGTGCTTGGCTATCTTGGAAGCAGTGTTATATGCAGAATCACATAATGTACAGAAAACCTTAATCCTTACAGATTCCCAGAGCTGCCTTCAAGGCGTCCTGGCGAACCCATTTCGCGCTAAAACCAGTAGTCATGtgatactatatttaaaaaacgccTTATTCAACTGTCACAAAAAAGGCCTTCAAGTTGTACTAGCTTGGATCCCCAGTCATAGTGGCATTCAAGGTAATGAATATGTGGATCTCTTGGCTAAAGAGTCCACTTATTCTGGTTGTCCTTCCCCTTATGCAACATACACAAGAGACTTACTCCCTCTGGCTAAGGTGGACCTTATAGAGACCTGGGAAGACAACTGGCGAAAGACAAAATTCAGTATGGGCAAACATTATGCAAGCATTCAAGATGAAATCCCTGTTAAACCATGGTTCTTTCATTACCACAAAgctagtaaaccagttacatcCACAATTTGTCGTATGCGTTTCGGTCATAACTGTACACCTGTTCATCTTGCTAAACTAAGGATTAGGGATAGTTCAATCTCCAGCGGCAGCTGCGATATGACTATTGCTTATGAATCTGAAGCCGGAATTAAAGAAGTTTATCATGATATGTTACAAGAATGCTTTGGAATTTCTCTCAAAGAATGGGGCCTCAGCCATAAGGTGTGCGGCTTTTGTATTGCTCAACTGCGACTCGCCAGTGATTTCAAAAAACAAGTGTTACAGTCCGAGCAAAATTTCAATCTCTATTACATAAAGAGGACAGcgcagaaatttaaaagtaaaaatccTATTAAACAGATATCGGAAAGGAAACGAGTGAAGTTGACTTGCAGTACTGTATTAAGAGACACCACCGCGTGCCCGTTCAGACACCACAAGAGCTGGTTCCAGTGCTTCTACTGCTTCCAGGAGTTCATGGAGGTCAATCCTTTAAGAGATCACACATTAAAGCTCCACCCGGACGTTGACGAGGAGCTGgtcaaattaaaaagctaCCCGCGATCTTTGCAGATTGACATTTCGAATTTGAAATGCCGCCATTGCGGCTCGACGTTGGCGGACGTCAGCGAAATGTGCAGCCACTTCCAAACGGTGCACGGCAAGAGGATCTACGGCGAGTGCATCGCTGACTACAAGGTTGATTCCAGTCCGTACACATGCCACATATGCGGGCGTGAGTTCCACGTCTTCAGAACTTTAACAACACACCTGAACGAGCATTACGCTAACTGCATATGCGACGTTTGCGGCAAATCCTTTATCAACACGAGACGCCTGGAGGTCCACAAGCGGACCCACGAGCGGGGCAACTATCCGTGCAGCAAGTGCGGCAAAGTGCTGAAGACGAAGACTTCGAAGGCGAACCACATGGAGAGCGTTCATTCTAATCGTGTGTTAAAATGTCAGATCTGCGCGAAACCAATGAAACACTACAACGACAGAATCAAGCACATGTCGGAAGCGCACAACATAACACACAACTTCAAATGTCCGTTCTGCAATCGCGATTATAAGATTAAACATTACCTGGCAACACACATCAGGCAGACGCACGgcaataaaaacaagaaatgtACGGAGTGCGACATGGCGTTCATCACCAACCACGGTTTGAAGAAACACATGTTGAAGCATACGGGTGAGAAGCCGTACACATGTACCGTATGCTGCAAGTCGTATGCGAGGAATTACACGCTGAGGGAACATATGAGGTCGCACGATGTTGCCAGACTGTcgagaaattaa
- Protein Sequence
- MDVDDGGGEASDKTGDPMPAKRKLSHPTPSTLKKKINTPDHPSASYQDVFTSPSFENKKMYGDKDQGPYIVHLSRTEPDPASGYSIKSIKIGQFLTKNRIANIVKQGVSNIGRNRVAIEFKHAKDANNFVESPLLEKSKLTAVIPAFNVTRIGVIRGVPTDISMEDLVEESELPPTCGKIIKARRMHRKNKRGDEVEWIPTQTVVITLSGQILPSHIYCFYTSIPVETYILPTIQCMNCCRFGHIKTQCRSKPRCYSCSKDHSGDKCPSNSPTCLFCSANHSAIDKSCPEHSRQKAIKVVMSQENISYLAASARFPAVRRPYSDISSQNKTAPPLHSSLPPTTPTSLTTSHKKTIYVRQKHPLPNLQAGYDKKAHENITCTPLSFPNGHSLHCQISAVTESWLKPGSHFRVPDYRCVRDDRRDGYAGTIILCKNSVPFSITPLPPLHENINAVSIKVLDIQIISLYLPHPSSACIPEINLLLSSIPPPLIVAGDFNSQHTMWGSHRCDQFSYMLVEVFNEFNLCVLNDGSPTRRVFPSQNPLSAPDLSLCSPTLAPSVSWQVLPSTYGSDHFPILLSISDRCVPSQTYLPPLLKYRTASANWELFKSETENKALNLQAVTPFNIKTTYCGFTSLLTQAADLSIPLKRPKQKKTSSPPWWDAECSKIVSQRKKAEKLYSTCMSSQNFISYQNIAAQCRRLLSNKKKLGWLSFCKNLSPRSPSSLVWKNIRRFRGSQNNEPNIHYDSQTWVTKFCDNLAPPWVPCEIECVTSLNLVDTDKSSDSEFNAPFSQSELKLALTHLKDSSPGADGIPYSFIVQSGPSAQNYFLDIINNIFLSGEIPEQWKKHLIIPILKPGKDPSSPSSYRPIALSSSLSKVMEHLVKNRLEWFLENRQILSASQFGFRKGFSTMDSLGILTTDIRLAFSNQKSVAAVFLDICSAYDNVILPLLRQKMLQLSIPARITNFIMNLFSNRQIVTRVKGDFLHPRCVWKGLPQGSVLSPLLYNLYTYDLHMSVDYIASILQYADDLVIYVSDPSIAEATARLSHATNYLNGWLTDHGLSLSPAKSSVVIFTRKRYIPNFSISIEGQSIPKDDKIKFLGVILDSKLTGIPHLSYISDKCEKNLNILRAISGVWWGAHPYTQKLLYNALVRSHFDYGSFLLEPCNKAALIALNKIQNKCLRLVTGSMKSSPVNALQVECAEAPLFLRRQFISDRFFFKAAQLHNHPLFSKLQMLSKSVKQSSYWSFKDAPCVLKSYHKFINISSPISQTDKNPLFLIPYEALTFVPYVSLDFNINKISADADSELKLALSNKWPGWLTMYTDASKSSDKGCVGFAIWIPQYRIVLKYKHTQHSSVFSGECLAILEAVLYAESHNVQKTLILTDSQSCLQGVLANPFRAKTSSHVILYLKNALFNCHKKGLQVVLAWIPSHSGIQGNEYVDLLAKESTYSGCPSPYATYTRDLLPLAKVDLIETWEDNWRKTKFSMGKHYASIQDEIPVKPWFFHYHKASKPVTSTICRMRFGHNCTPVHLAKLRIRDSSISSGSCDMTIAYESEAGIKEVYHDMLQECFGISLKEWGLSHKVCGFCIAQLRLASDFKKQVLQSEQNFNLYYIKRTAQKFKSKNPIKQISERKRVKLTCSTVLRDTTACPFRHHKSWFQCFYCFQEFMEVNPLRDHTLKLHPDVDEELVKLKSYPRSLQIDISNLKCRHCGSTLADVSEMCSHFQTVHGKRIYGECIADYKVDSSPYTCHICGREFHVFRTLTTHLNEHYANCICDVCGKSFINTRRLEVHKRTHERGNYPCSKCGKVLKTKTSKANHMESVHSNRVLKCQICAKPMKHYNDRIKHMSEAHNITHNFKCPFCNRDYKIKHYLATHIRQTHGNKNKKCTECDMAFITNHGLKKHMLKHTGEKPYTCTVCCKSYARNYTLREHMRSHDVARLSRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -