Bhed025046.1
Basic Information
- Insect
- Byasa hedistus
- Gene Symbol
- zfy1
- Assembly
- GCA_029286795.1
- Location
- JAGSMW010000047.1:84112-89200[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0039 0.42 12.0 5.5 1 23 263 285 263 285 0.99 2 9 0.13 13 7.2 0.1 1 23 307 328 307 328 0.96 3 9 1.1e-05 0.0012 20.0 1.8 1 23 336 358 336 358 0.97 4 9 0.15 16 7.0 0.4 1 23 371 394 371 394 0.94 5 9 0.00049 0.052 14.8 3.1 2 23 405 426 404 426 0.97 6 9 1.2e-05 0.0013 19.9 0.6 1 23 432 454 432 454 0.96 7 9 5e-05 0.0053 17.9 2.3 2 23 461 482 461 482 0.97 8 9 1.4e-06 0.00015 22.8 2.9 1 23 488 510 488 510 0.97 9 9 0.016 1.7 10.0 2.4 1 23 516 540 516 540 0.91
Sequence Information
- Coding Sequence
- atggaAGCTATTTGCCGTCTATGTTATTCTacgaaatttgttaataattatatatttgacGAAGAAAGCGCActgtttttgaaaatgttatatttacccATCaagGTTTTAAAAAACGATCAGCTTCCCCAAaagatttgtaataaatgtagcTGCAAAGTAAATGATTTGTATCAGTTTTGTAACGAAGCTATTGAAGTTCAGACAAGACTGTGCACCCTCTTAAAAGCATCAGGTGTTCCATTTTGTGACTTGGAGATATACCATGTAAAGCAGCCTGCACCTTCACCTTCCACTTTGAACATTAACATGGTCCATGATCGGGGGACTCAAACAGATCAAGATAATTCAATAGATTTACAAGTCGTGAAAAAAGAAGAAGTTATTGAACCTTCTAACCCATCCCCACTACCAACAGTTGtgaaaacagaaaatgatTTATCAGATAATGAAAGTATCGGAGCTACTAATGGTTCATACTCCGATGATAGTGAAGACTTGTCTCTGCACAATCttaaggaaataaaaagagaAGAGAATGGTCAGGTGGAGATTAAGAATGGACAGATTTGCCATATCAAAAGAATTAGAAAGAAAAAGGaagatttaaaagatttagaaATTCTCATAAATTCACTTCCTGATTCTTCAATCACTGTGctttcaaatgaaaataaaaatatgaacataGAAGCTAAAGAGAAGGAAATAAAGGTAGAAATAGTTGAGGATGATATGCTCCATacaaacaagaaaaataaaaagaaagacaaGCCCCAGGACGTTTACCAGTGCTGTAATTGCACTGAGaagtttacaaacaaaacagaAATTCTCAAGCATTACAAATCGCACGCGGTCCCGGTAGGGGAGCTGGTGGAGGCCCTTCCCGCGCCGCCCGAGCCCACAGCTTATCCGTTCAAATGTCCAAGGTGCAAAAAGCTGCTGCAGGCGGGCGAGTGGGCGGCGCACTGGCGGCGCCACTGGGAGCGCGACCGGCAGCCGTTCCGCTGCCGTCTCTGCGAGAAGACCTTTCGCGACTCATACCAGCTGTTCAGGCACGGGCTGGTGCACGAGGCGGAGGCGCCGGGCGGCGCGGCCGACAAGCGCTTCGTGTGCGACCTGTGCCCCGAGGGCTTCGTGTACATGCGGTGCATGCTGTCGCAccgcgcgcgcgcgcaccccgaggcggcggtgcgcgcggcCGCGCTGCGCTGCCGGCTGTGCGCGCGCCAGTTCGCGCACAGCAACTCGCTGCGGCGGCACCTGCGCTCGCACAGCGGCGAGCGCAACTACCTGTGCAGCGTGTGCGGCAAGGCGCTCACCTCCGCCGAGCACCTCAAGTACCACCTCCGCATACACACCGGCGACAAGCCCAACGTCTGCAAGACCTGCGGCAAGGGCTTCGTGAAGAAGTGCAACCTGACGCTGCACGAGCGCGTGCACTCCGGGGAGAAGCCGCACGTGTGCTCGCACTGCGGGAAGGCCTTCAGCCAGCGCTCCACTCTCATCATCCACGAGAGgtaCCACAGCGGCGCGCGGCCGTACACGTGCGCGGTGTGCGCGCGCGGGTTCGTGTCGCGCGGGCTGCTCACCATGCACCACAAGAGCCGCTGCCACGCGCCGGACTAG
- Protein Sequence
- MEAICRLCYSTKFVNNYIFDEESALFLKMLYLPIKVLKNDQLPQKICNKCSCKVNDLYQFCNEAIEVQTRLCTLLKASGVPFCDLEIYHVKQPAPSPSTLNINMVHDRGTQTDQDNSIDLQVVKKEEVIEPSNPSPLPTVVKTENDLSDNESIGATNGSYSDDSEDLSLHNLKEIKREENGQVEIKNGQICHIKRIRKKKEDLKDLEILINSLPDSSITVLSNENKNMNIEAKEKEIKVEIVEDDMLHTNKKNKKKDKPQDVYQCCNCTEKFTNKTEILKHYKSHAVPVGELVEALPAPPEPTAYPFKCPRCKKLLQAGEWAAHWRRHWERDRQPFRCRLCEKTFRDSYQLFRHGLVHEAEAPGGAADKRFVCDLCPEGFVYMRCMLSHRARAHPEAAVRAAALRCRLCARQFAHSNSLRRHLRSHSGERNYLCSVCGKALTSAEHLKYHLRIHTGDKPNVCKTCGKGFVKKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLIIHERYHSGARPYTCAVCARGFVSRGLLTMHHKSRCHAPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00180757;
- 90% Identity
- -
- 80% Identity
- -