Bhed018583.1
Basic Information
- Insect
- Byasa hedistus
- Gene Symbol
- -
- Assembly
- GCA_029286795.1
- Location
- JAGSMW010000024.1:4863851-4875999[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 9.1e-06 0.00097 20.2 0.6 3 23 692 712 691 712 0.98 2 9 6.5e-06 0.00069 20.7 2.7 1 23 718 740 718 740 0.99 3 9 3.7e-06 0.0004 21.5 2.2 1 23 755 777 755 777 0.98 4 9 0.0001 0.011 16.9 0.6 1 23 792 814 792 814 0.98 5 9 5.1e-05 0.0054 17.9 2.6 1 23 829 851 829 851 0.98 6 9 4.1e-07 4.4e-05 24.5 1.5 1 23 866 888 866 888 0.99 7 9 0.00018 0.019 16.1 2.8 1 23 894 916 894 916 0.98 8 9 5.1e-05 0.0054 17.9 0.1 1 23 923 945 923 945 0.99 9 9 1.3e-05 0.0014 19.8 2.1 1 23 951 973 951 973 0.99
Sequence Information
- Coding Sequence
- atgccGGCGACGGTGGCTTTGCGGCCACCGTGGTGCCCCCTGCTAGTCAACAGACGAGGCTATGGCGACCGAATCTCTGGCGGTATAACCAGACTCCGCTTCTGTGTTTTAGTGCGTCAGACGACAATCGGCACTCACCCAATAAACCCAAAACCGTCAAATTCAAAACTGATGAAAAAGttgcaaaataattttcgtGGTACGGATAGGGCGTCGCCGCAAAACGACGCGCAGATACATCGCCCTACCTCTGCGATAAATTCACTAGGGCTATCGGATCAAGGGCGGGTCCGACTAAAGAAGCTAGCCCAGAAAAGCAGCAAGAAGGTCCGCTTCGCTACTTTGAATGCAGGAACACTATCAGAAGGGACAAGAGAGCTCGCAGATTTATTCAGGCGCCGTAGGTTGGATTTCATTTGTCTCCAGGAAACCAGATGGCAAGGTGCCAAGAACCGTAACATCGGGGAGGGATACAAGCTAGTATATTCAGGATCGCGCGGAGGACGAAATTACGTGGCTGTGGCAATTAGCCCAGAACATCTAGACAATATAGTAGAAGTAAAACGCTTCAGTGATAGGGTCATGAGCGTCAAAGTCGTCGTGCATGGCGAGGTAGTTAACATCGTTGCAGCCTATGCTCCTCAAGTAGGATGTTCTAAAGTTgcaaaagatttattttggaCTCTGCTAGATGACATCTTGCAAGAAATATCCAACACCGAAATTACTATACTAGGCGGTGATCTGAACGGCCATGTGGGTTGTGAGTGCCAGCCGTTTCGACGTATATATGGAGGTCACGGGTACGGCATCACAAATGAAGAGGGTAAATCAATTATGGAATCCGCCATCTCCCATGATCTAGCTATTGCCAATACGTTTTTCATCAAGAAACCCAACCATTTGATTACCTACAAAAGCGGTACAACTTGCTTCCAGATCGATTATATTCTAGTAAATAGAGGTCACATCGGAagaattaaaaactgtaaagtAATTCCCGGTGAATGCGTTGCACCAAAGCATCGAGTCGTCGTTATGGATATGCACTTTAGACCAAAACCAACATCAAGAAAACAAAGGGAACCAGAACTCATCAAATGGTGGCTCTTGAAAGGTGACAAAGTACAGGAGTTCCGCAAAGAGCTTGAAGACCTAAATTTCCCCGAGAGTAATGTTAATACCATGTGGATGGACATACAAAGCAGGATTTTGAAAGCAGCAGACAATATACTAGGACGAACAAAGAGCGGAAAGCGCACATCAATGGAAACGTGGTGGTGGAGTGAACCAGTACGTACAGtaattagaaaaaagaaagaggCATTTAAAACATGGCAATCCACCAAGACAAATGAAGATAGAGAGCTGTACAAATCAAGTAAGAAAGAAGCCCGTAAAGTAGTCGCTGTTGAAAGATCGAAACCCACTAAAGAACTTTATGCATCCTTGGAAGCGGACGGCGGTCATAAACTCATATATAAGTTAGCTAAGTCGCGCAACCAAGCTACCAAGGATTGTACTAAATCTAAAATACTTAAGGGACCAGATCGAAAGCTACTATATAATGATGACAACATCTTGAAAACTTGTTTCCCGGCACACTGGGGCGTGGGCGTCGGGGGTGTGGCACGGGGCGTGGGGGTCCCCGTGCCACCCCCTGGCGACCTACTCGCCACGATATCTATGTTCGAACAACAAATCAAAGCTGAACCGATgagCTTCTACAGTTCTCACTCTCATGTACACTCCGGCCCCCCAACAATAGTCCGTTCAGACTCTAATCATGGAGTGTTAAATATGAACCAGCATCATCATCAAGAGGATTCAAAAGATAGCCTTATAGTACAACAACAAGTACAACACCAAGAGCTGCTGGAACACCATCAACAGCAACAAGAGTTGCAAGCACAGGATGATGAGttaagttTCAAGGGGATGGATGATGAAGGAGTTGAAATGGATATGGATGGTCGGCAATGTTCCCagGGCATGGGAGTAGACATAAGTTCAATACAAGCGAAGCTGGAGATGTCTAATGGAGGACAAGTACCAAGAAACAAACCACAAGCTTGTAAGGTCTGCGATGCGGCATTTTGTCGCAAGCCGTATCTTGAAGTGCACATGCGAACGCACACAGGCGAAAGACCCTTCCAATGTGATCTCTGTCTTAAACGATTCACACAGAAGTCCAGCCTGAACACGCACAAACGCGTCCACACGGATGAGCACATGCGCGCGTTGTTGGTGAAGGAGCGGCCCTACCAGTGCGATCTCTGTCAGATGCGCTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATACACACGGAGGAACACAAACGCGCGCTGCTGGCTAAGGATCGTCCCTACCAGTGCGGCATCTGCTTTGTGAGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGAAAAATTCATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATCCGCTTCACTCAGAAGTCCAGCCTGGGCCGACACGGAAAGATACATACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAGTGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGCGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGTGCAAGGGCGTCCTTACACGTGCGGGCTATGCCCGGCGGCCTTCGCACGCCGCCCCTACCTGGACACTCACATGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGCCTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTGAATATACATAAACGGACGCACACAGTTTGTCGCGTAAAGCTTTTGCGAAGATTTGGGAGCGGAGTTGCGGCGAGCGGCGACCAGTCCGCGCCGCGATCTCCGTAG
- Protein Sequence
- MPATVALRPPWCPLLVNRRGYGDRISGGITRLRFCVLVRQTTIGTHPINPKPSNSKLMKKLQNNFRGTDRASPQNDAQIHRPTSAINSLGLSDQGRVRLKKLAQKSSKKVRFATLNAGTLSEGTRELADLFRRRRLDFICLQETRWQGAKNRNIGEGYKLVYSGSRGGRNYVAVAISPEHLDNIVEVKRFSDRVMSVKVVVHGEVVNIVAAYAPQVGCSKVAKDLFWTLLDDILQEISNTEITILGGDLNGHVGCECQPFRRIYGGHGYGITNEEGKSIMESAISHDLAIANTFFIKKPNHLITYKSGTTCFQIDYILVNRGHIGRIKNCKVIPGECVAPKHRVVVMDMHFRPKPTSRKQREPELIKWWLLKGDKVQEFRKELEDLNFPESNVNTMWMDIQSRILKAADNILGRTKSGKRTSMETWWWSEPVRTVIRKKKEAFKTWQSTKTNEDRELYKSSKKEARKVVAVERSKPTKELYASLEADGGHKLIYKLAKSRNQATKDCTKSKILKGPDRKLLYNDDNILKTCFPAHWGVGVGGVARGVGVPVPPPGDLLATISMFEQQIKAEPMSFYSSHSHVHSGPPTIVRSDSNHGVLNMNQHHHQEDSKDSLIVQQQVQHQELLEHHQQQQELQAQDDELSFKGMDDEGVEMDMDGRQCSQGMGVDISSIQAKLEMSNGGQVPRNKPQACKVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALLVKERPYQCDLCQMRFTQSSSLNRHKKIHTEEHKRALLAKDRPYQCGICFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFIRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPYTCGLCPAAFARRPYLDTHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVCRVKLLRRFGSGVAASGDQSAPRSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -