Basic Information

Insect: Bruchidius siliquastri
Gene Symbol: ci
Assembly: GCA_949316355.1
Location: OX438529.1:2285627-2312013[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.0075 0.56 10.9 0.7 3 23 292 315 290 315 0.94

2 5 0.15 11 6.9 0.1 3 23 325 350 323 350 0.79

3 5 0.00021 0.016 15.8 1.9 1 23 356 380 356 380 0.97

4 5 0.00032 0.024 15.2 0.4 1 23 386 411 386 411 0.97

5 5 7.5e-06 0.00056 20.4 0.3 1 23 417 442 417 442 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.0075	0.56	10.9	0.7	3	23	292	315	290	315	0.94
2	5	0.15	11	6.9	0.1	3	23	325	350	323	350	0.79
3	5	0.00021	0.016	15.8	1.9	1	23	356	380	356	380	0.97
4	5	0.00032	0.024	15.2	0.4	1	23	386	411	386	411	0.97
5	5	7.5e-06	0.00056	20.4	0.3	1	23	417	442	417	442	0.97

Sequence Information

Coding Sequence: ATGTTCCGTCCAGCAGCCTGTCCTGTTCGGTCCGTTCTTGGAAGTGTTGGCGGAACCCCTGGCAGTGGCCTGCTTCTGGGCAGAGAGCTGCACCCAGCGTACCGATTACCGCCACATATGGAGTACCTGTATTCTCTTCAGCATTCCACGACCAACTCGATTCATGgatTGGGATTGAGTCCTGAATACCTGAGCGCTAGAGGGTTAACAGAACTTCATCCATCTTCCACTCTGGCCAGTACAGAATTTCCTTTTAGTATAGATGGTTCTCGTTTAAACAGTCCCAGGCCTGGAGGTGGGGGTGGGGGAGGAGGTGCGGCCAGCATCAGGGCATCCCGGAAACGTGCCCTCTCCTCCTCCCCCTACTCGGATTCCTTCGACATCAACTCCATGATTCGGTTTTCCCCCAACTCGCTGGCTTCCATTGTCAATGGATCCAGGTCCTCCTCGGCCAGTGGCTCCTATGGACATCTATCTGCAGGTGCCATAAGCCCCGCCCTGTCCGTCCACCCAGCCGTTCACCTACAGCAGCTGCAGGCGCACCTGATGCGTAGCTCGGGCTCGCTACTGCCCCTCCCGCCACATGGGGCCCCGCCCCCTCACCCCCACCACTCCGTCTACTCGCTCGGACACCATCCGCTGCACATGTCGCACAACGCCGCGGCAgccaacaataataacaacaagaCTGACATCCTGAGCGatagaaaaaaatctgataCTAGTACAATAACCAACTTGGACGTAGACTCCACCTCCAGGAAGCCGAGAATTAAGAAAGAACCCTCGCTGAACTCGTGTGCGCCAAACACTGATGGTCAAAATGACCCGACTGATCTCAAAGATGAACCAGGTGATTTCATCGAAACCAATTGCCATTGGAAGGACTGCTCGACGGAGTTCGGAACACAAGAAGAGCTCGTTAAGCATATAAACAACGACCACATTCACGCCAACAAAAAGTCCTTTGTGTGTCGGTGGGAGGGATGTTCGAGGGCTGAAAAACCCTTCAAGGCGCAGTACATGCTGGTAGTGCACATGCGGAGGCACACAGGAGAAAAACCGCATAAATGCACATTCGAAGGTTGTGCGAAGGCGTATTCCCGGCTGGAAAACCTTAAGACCCACCTACGATCTCACACGGGCGAAAAGCCATACACTTGCGAGTACCCAGGCTGTTCGAAGGCCTTCAGCAACGCTTCGGATCGAGCCAAACATCAGAACAGGACGCACAGCAATGAGAAACCGTACGTGTGCAAAGCACCCGGTTGCACGAAGCGCTACACGGACCCCTCCTCGCTTCGAAAGCACGTGAAGACGGTACACGGGGCGGAATTCTACGCGAGCAAGAAGCACAAGGGCGGCGCCGATGGAGGCGGTGGCGAGGAGAGTGGGGGCGGAGCCGGCATGGGCGGTGCCGAGGGCGCCAGTCCACGTAGCGAGCCGGACTCCAACAAGACAGCCAGCCTGAGCAGCCCGAGCGTCAAGTCTGAATCGGATGCGGCCAACTCGCCGGCAGGCGCTGGCCAGGGCGGCATGGGCGGTCACCAGACCAGCCCCATGATGACGCTCGCTGGTGGATTCAACGACGACTTCCCTGCCCCGGACTTGAGTCCTACGAGCCTTCACCCGCGGCACCCGGACCACACCGGGGGCCCGGGCAGCGGGGGAGAAGATCCTCCATGGGCATACGACGCCGAGGACCTGGAGATCGATGACCTGCCAGTGGTGCTGCGCGCCATGGTGGGGGGAGTGGGCGGAGCCACAGCCGCTGCGCAGGCGGTGCCTCGTATGCGGGTCAAGCCGAGGAGCAAGGGGGTGGCACCCGCTGTACAGAGGAAAAACATTGCAGATCTCAACCGCAGGATTACCGATCTCAAGATGGAGGgtggTGTTACTGTCCCGACATCAACAGCCAAACCAACAACGCAATTCACCGAGCTTCAGCAGAGGCTGCAACCATCCACAGCTGTGCAGGCGCAGCTAAGGAGAGACAGCTCCTCTACAGTCAGCTCTTACTATGGCAGTATGCGCAGCGCAGACGCAGCGAGTCGTAAAAGTAGTCTAGCTTCGCAGGTGTCTAGACCAGGCATACAAGCCACAGGACAAGGTTCCTTCTACGATCCCATATCAGTTGGGAGTTCGAGAAGGTCTAGTCAGCTATCGACGACGACAGGAGGCGGTAGCTCAATACCCCCACCACCACCAAGCCATTTACTCGCTGGTCATCTGCAAAAACTACAAGCCACTGCCGTGCCAAGCGGAGTAAACAGCAATTTGGTTTTGCAGacCCAGACCGCATCGCTTCAACACACCGCCATGCAGCAAAGTTGGCTGTCAAACACTCTCACCAACCTGACAACAGCAAGCAGCGAGGCGCGAAGGATGTCGGAACCTACCCACACGATGACAGATAGAAAGAGTCCACCACCTCGACCGGCTTCAGTGACATTGTCGCCTCTCAAGGGCACCATGAGCTCATCTGAAATCCATCCCAATCAAGCAGTGGTTTTGGACGAAGTCGGTGAAGGAGAAATGGTCGAAAACAAGTTGGTGATACCTGATGAAATGGTTAGGTATTTGAACCAAGTGGCCGACACTCACACGGGAGACGTCACAAATATGAGTTGGTCGGAAACCAACGATAATTCGAACAGAAACACCACTCGGAAGCCCCTTGGCAGTCCGTCGAGCTTTGGCATTCTTCCTTCTCCGAGCAATTTGAATCAGATGATTCCTTCGCCCTCGAACATCAATCAAATGATATCATCACCTTCCAGTTTGAATCAGATAATGCCTTCTCCGTCAAGTCTCAACCAAATGATGCCTTCTCCGTCAAATCTTAGTCAAATGATGCCATCTCCTTCAAATACGAATCAAATTCACTCTCAAATGGCACCTACTCCCTCTAACGCAAACCAGATGCTAGCATCACCTGCTATCAATCTCAACCAAATGATGGCGTCACCAGCATCCAACGGGAACCAAATGATGCCGTCCCCTGCAGCAAATATCAATCAGATGATGCCTTCTCCAGCGGCCAATATGAACCAGATGATGCCTTCTCCAGCGGCCAATATGAATCAGATGATGCCTTCTCCAGCGGCCAATATGAACCAGATGATGCCTTCTCCAGCGGCCAATATGAACCAGATGATGCCTTCCCCAGCGGCTAATATGAATCAAATGATACCTTCTCCAGCATCAAACATGAATCAAATGATGCCATCTCCCTCGGCGAATATGAATACCATGATAAACTCACCTGTTGGTGCGATGAATCAAATGATGCCCTCGCCAGCAAACCTCAATCAGATGATGCCCTCACCTGCACCATCAAATTTAAACAACCAAATCATGTCACCAGCGCCTAACATGAACCAGATGATAGCATCGCCTTCATCTAACTACCAGGTGATGCAATCTCCGCCTTCAACGTACAGCATGTTGTCCCCGGCACCAAGCACAAACCAAATGGTTCAAAGCCCAGGAATGGCCAGTCAGCAAATCATGTCGCCTGGTATGCAAACCATGAGTCATCAATTGCATGGCAATCAAATGATGATGCAGCATACACAGATGAACAATAACTGCTATACTAGACAGCCGATGACTCAAGGCGGTTGTTACAATATGCCACAGCAGTGGAACAACTGTCAGACTATGTCGAATATGATGCCACAGCAAGTCAGTCACGGTATGTGTAACAGAAACCAAGACTATCAGGGACATAACAGGCAAGTGGTGAGCAACAACTATCCTATGCAGCAAAACTGTGGAACCCACAACTACCAAAATCAAAACGGGTACCTGAATTGTCAGAACAAGATGAATGGCAACTTCAACAACTGTCAACCGTACCAAGCATCTTCTCAGGGCCCTGTATACAATTGTATGCCGAACACTTCAGAACCTTTACCCTCACCTGCTATCGCCACACCTGCGCCAGCTGATGTTGTGAATCATCCGCAACAAGCTCAGATGAGCAGACCTTGTTCAACGCACTATGCTCCGAACTGTTACCCCACTCCTCCCTATACGAACCAATGCGTTCCGAACCCTCAAAACTGTAACAACTGTCAGAATTGCAATGGGTTCAGTCAACAGAAAAACGCAGATCACTGCAAAGACAACCAGTCTCAAACGTCGGCTGGAGTCGCGAATCAGACAATGCTCGGCATGAGACAAGACGCGTATCAAAGGACGCTAGAGTACGTTCAAAATTGCCAATCATGGGTGAACAATTCTGAGGTTGCGAACAGTACACACACCTTGAAGTGTGGCGACAAAACCACCTCCAACATGGTCGTTAACGACATGACGTCATCGCTCAGTTCTCTGTTAGAGGAAAACAGATATCTGCAGATGATACAGTAG
Protein Sequence: MFRPAACPVRSVLGSVGGTPGSGLLLGRELHPAYRLPPHMEYLYSLQHSTTNSIHGLGLSPEYLSARGLTELHPSSTLASTEFPFSIDGSRLNSPRPGGGGGGGGAASIRASRKRALSSSPYSDSFDINSMIRFSPNSLASIVNGSRSSSASGSYGHLSAGAISPALSVHPAVHLQQLQAHLMRSSGSLLPLPPHGAPPPHPHHSVYSLGHHPLHMSHNAAAANNNNNKTDILSDRKKSDTSTITNLDVDSTSRKPRIKKEPSLNSCAPNTDGQNDPTDLKDEPGDFIETNCHWKDCSTEFGTQEELVKHINNDHIHANKKSFVCRWEGCSRAEKPFKAQYMLVVHMRRHTGEKPHKCTFEGCAKAYSRLENLKTHLRSHTGEKPYTCEYPGCSKAFSNASDRAKHQNRTHSNEKPYVCKAPGCTKRYTDPSSLRKHVKTVHGAEFYASKKHKGGADGGGGEESGGGAGMGGAEGASPRSEPDSNKTASLSSPSVKSESDAANSPAGAGQGGMGGHQTSPMMTLAGGFNDDFPAPDLSPTSLHPRHPDHTGGPGSGGEDPPWAYDAEDLEIDDLPVVLRAMVGGVGGATAAAQAVPRMRVKPRSKGVAPAVQRKNIADLNRRITDLKMEGGVTVPTSTAKPTTQFTELQQRLQPSTAVQAQLRRDSSSTVSSYYGSMRSADAASRKSSLASQVSRPGIQATGQGSFYDPISVGSSRRSSQLSTTTGGGSSIPPPPPSHLLAGHLQKLQATAVPSGVNSNLVLQTQTASLQHTAMQQSWLSNTLTNLTTASSEARRMSEPTHTMTDRKSPPPRPASVTLSPLKGTMSSSEIHPNQAVVLDEVGEGEMVENKLVIPDEMVRYLNQVADTHTGDVTNMSWSETNDNSNRNTTRKPLGSPSSFGILPSPSNLNQMIPSPSNINQMISSPSSLNQIMPSPSSLNQMMPSPSNLSQMMPSPSNTNQIHSQMAPTPSNANQMLASPAINLNQMMASPASNGNQMMPSPAANINQMMPSPAANMNQMMPSPAANMNQMMPSPAANMNQMMPSPAANMNQMMPSPAANMNQMIPSPASNMNQMMPSPSANMNTMINSPVGAMNQMMPSPANLNQMMPSPAPSNLNNQIMSPAPNMNQMIASPSSNYQVMQSPPSTYSMLSPAPSTNQMVQSPGMASQQIMSPGMQTMSHQLHGNQMMMQHTQMNNNCYTRQPMTQGGCYNMPQQWNNCQTMSNMMPQQVSHGMCNRNQDYQGHNRQVVSNNYPMQQNCGTHNYQNQNGYLNCQNKMNGNFNNCQPYQASSQGPVYNCMPNTSEPLPSPAIATPAPADVVNHPQQAQMSRPCSTHYAPNCYPTPPYTNQCVPNPQNCNNCQNCNGFSQQKNADHCKDNQSQTSAGVANQTMLGMRQDAYQRTLEYVQNCQSWVNNSEVANSTHTLKCGDKTTSNMVVNDMTSSLSSLLEENRYLQMIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -