Bsil004551.1
Basic Information
- Insect
- Bruchidius siliquastri
- Gene Symbol
- lola
- Assembly
- GCA_949316355.1
- Location
- OX438531.1:337795-351563[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00099 0.074 13.7 2.9 1 21 100 120 100 121 0.95 2 8 4.5 3.4e+02 2.2 0.1 1 9 129 139 129 144 0.88 3 8 0.00077 0.058 14.0 1.1 1 20 146 165 146 167 0.95 4 8 0.0022 0.16 12.6 2.6 1 23 175 200 175 200 0.98 5 8 5.1e-05 0.0038 17.8 0.8 2 21 211 230 210 231 0.95 6 8 0.01 0.78 10.5 4.7 1 23 239 262 239 262 0.95 7 8 0.12 8.7 7.2 1.6 2 21 287 306 286 307 0.91 8 8 7.9e-05 0.0059 17.2 4.6 1 23 315 338 315 338 0.98
Sequence Information
- Coding Sequence
- ATGAGTTATACCTGTGATGGTACAGATAAAGACAATTCATATGAAAAACCAGTGCAGTTTCTTAGGTCCCAGAACACTgtcggccatgatgggccactgcaggccatcgccCTATCGCCATTGTGTGCAGATACTGAAAAGGAGCAAGAAGATAAAGACGCTCCACATGTTTTGATGGAACGAGACGGACCAAGAGCCATAACAAGAAAACGTTGTTATGGATGTTACCAAAGAATGAAAGTAGAGATGAGTAGCAAGTATGCGTCTCAATACGCTAGGAAAGTCAGCACGTATTGTTACTGTTGTCCAAACTGCAACAAAGGTTATAAGTACAAAAGGGGACTACTACAGCATCAAAAGTATGAGTGTGGGAGGCCTCCTGCATATGAATGTCCTGTTCCTGATTGCGGTTATAGAGGTAGTTTGAAGGgCAAATACACGTGCGATCGATGCTCTAGGCAGTACTCGAGGAAAAGTGGTCTATGGCAACACAAGACTTACATGTGCGGCAAGGAAGCTCAGTTCAAATGCCCATTCGACTTCTGTCCGCACAGAACCAAACTGAAGCCCGATCTCAGAAAACACATCAGAAGGATGCATAGTCATATTTACGGGACGGTGAATTATTCAGAGTGCAGAGGCTGTGGGAAACACTACATGACGAAGTCGGGACTGATGAAGCATATGAAGTACGAGTGTGGCCAAGACAAGCGGTTTCAATGCATTTACTGTGATCACAGCACTAAGCAGAGATACAACTTAGTCGTGCATGTCAGACATAAACATAAGGACCATCTTCGCGAATTTATGCAGTGGTACTATGAGAGAAAACTTCACCAGTGGAATGTTAAATCTGTCTACTGCCCAACATGTTGTAAAAGATTCAAGAACGCCAATTCGCTGGGCAGCCATCGTAGTAGAGATTGCGGCAAGCCAAAGAGCTACAGATGTGAGATGTGCAACTATTGTTCTAACAGAAACAATGATCTGAAAAAACACATTCAAAGACGCCATCGTAGGATGGACGATGAAATGAACGATTGCGACGAAAAATTGACTGAGAACCCATTCtga
- Protein Sequence
- MSYTCDGTDKDNSYEKPVQFLRSQNTVGHDGPLQAIALSPLCADTEKEQEDKDAPHVLMERDGPRAITRKRCYGCYQRMKVEMSSKYASQYARKVSTYCYCCPNCNKGYKYKRGLLQHQKYECGRPPAYECPVPDCGYRGSLKGKYTCDRCSRQYSRKSGLWQHKTYMCGKEAQFKCPFDFCPHRTKLKPDLRKHIRRMHSHIYGTVNYSECRGCGKHYMTKSGLMKHMKYECGQDKRFQCIYCDHSTKQRYNLVVHVRHKHKDHLREFMQWYYERKLHQWNVKSVYCPTCCKRFKNANSLGSHRSRDCGKPKSYRCEMCNYCSNRNNDLKKHIQRRHRRMDDEMNDCDEKLTENPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -