Bsil009001.2
Basic Information
- Insect
- Bruchidius siliquastri
- Gene Symbol
- -
- Assembly
- GCA_949316355.1
- Location
- OX438533.1:6207140-6212227[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.58 43 5.0 4.7 1 23 325 347 325 347 0.97 2 20 0.0063 0.47 11.2 2.3 1 23 355 377 355 378 0.95 3 20 0.0022 0.16 12.6 1.3 1 23 390 412 390 412 0.98 4 20 0.00017 0.013 16.1 0.8 3 23 424 445 423 445 0.96 5 20 0.0017 0.12 13.0 1.5 1 23 457 479 457 479 0.96 6 20 0.25 19 6.1 1.8 1 23 489 512 489 512 0.91 7 20 0.22 17 6.3 0.4 1 21 524 544 524 545 0.93 8 20 0.033 2.5 8.9 0.6 3 23 556 577 555 577 0.94 9 20 3.7 2.8e+02 2.5 4.0 1 23 589 611 589 611 0.95 10 20 0.015 1.1 10.0 0.6 2 23 622 644 621 644 0.95 11 20 0.0031 0.23 12.2 6.6 1 23 652 674 652 674 0.97 12 20 0.0068 0.51 11.1 1.8 3 23 679 700 678 700 0.93 13 20 0.14 11 6.9 3.2 1 23 712 734 712 734 0.95 14 20 0.0027 0.2 12.3 0.2 2 23 744 766 743 766 0.92 15 20 0.013 1 10.1 2.9 1 23 778 801 778 801 0.96 16 20 0.0035 0.26 12.0 0.1 2 23 812 834 811 834 0.94 17 20 0.16 12 6.7 2.3 1 23 846 868 846 868 0.97 18 20 0.52 39 5.2 2.5 3 23 906 927 904 927 0.95 19 20 0.0023 0.17 12.5 1.6 1 23 1005 1027 1005 1028 0.96 20 20 0.082 6.1 7.7 3.4 1 23 1112 1134 1112 1134 0.98
Sequence Information
- Coding Sequence
- ATGCCTAGAAGATGCTTTGTACCAGGCTGCAAGAGTGGCTTATGGAGTGAGAAAGAAAGActgaaaattaatggtttacATGTGCCTCATATGTTTTATGCTCCcaagAATAAGGTTGAAGAATGGCAGACCAAAATTGGTTGGACAGCTAAGCCTTTGACATCCACTAGTGCTGTGTGTGAAAATCATTTCTTACCAGAAGACATACTATCAGATTGGAAGCATACTGGACCAGATGGCAGGCTTGTGAGCATCCCAAGGGAACGAGTTTCACTGCATCCTGATGCTGTTCCATGCATCTTCACTTCACTAGCCTCAGACAAATCAGATTCAACAACTCTGACACAAGTAATAGATGAAAAACAGTCAGTAAACAATCGATATGCTCATAAATACATGAAGATGAGGACTGGCAAGAGAACAACTGAAGAGAATATTGAAGAAGTTAAATCCACAACCTCAACAGACacagtgaaaattgaaaatatcaatccTATAGAGCTAACTACAGAAGCAGATATGGAAAGTATAAGAACATGTGAACCATCTAATGTAGTATTAGAAAGAATCAAAGTAGAATGCAGTTATGATGAGAGTGAGTGTAAACAAATATCAGAAGAAGAAAGcataatatctaaaaatatagatCAGTCCAAACCCATTGAGCAGCTGTTCATTAAAAAGGAGATTGATACATTTGATATGGTGATGAACAGGATGCATAATGAAGGTGTCGATGTTAGAAGTTGGGATAAATACAATTTGAGCCAACATCTGGAAGCAGATGAGCATGAAGTTAaagttaaaattgaaaaatcagaaTCAGAGACGCATATATCTGGTGATATGAATGCTACAGATACTTTTGATCACATCAAAAGCGAGAATGAGCCATTAATAGATCCAGAACTACATagtttccaaCAGAAAGAAATCTATGAACCAATACAGGAGGAGATAGTCTCAAGGGCATTCAGTTGCTACGACTGCAGTTATACCACTTTCTGTAAAAATAATCTTACTCAGCATATGAGCGTACATGCAGGGTTGATCccgtcaaaatatatttgttcacaATGCAACCGAGGCTACCAAACCAAATCGACTCTAGATGAACACACCATCAAGCATCATCCCAAATTGATCGCTTCAGTTACCAGCAAGATTCATAAATGCACAGAGTGCTCTTATAAAACTGTTATGAAGCCCAGTTTGGCTAGACACATGTTGATCCATCCAAAGACCGCCTCCAGCTTTAGGTTCAGATATTGTGCACATTGCGACGCCTCATTCAAAAGTAAAGCGGCGCTGAACGATCATATTTTGAGAAAACACCCCGATTCCAGTCAGTTACTTTCCTGTAAAATTTATCTCTGTGCGAATTGTCCgtacaaaactacaaaaaaggATCATTTAGTTGTGCATATGTTGAAACATTCCGGGGCAGCTTcgaaatataacattttcaaatgtCAGCATTGCAATGCAAAGTTCAAATTTGGAGTCGTTCTGGATGATCATATATTAAGGAAACATCCTAATTATGTTTCAACAGTCagcagtaaaatatataaatgtataaattgtgCATATATAACCACAAGAAATAGTTTCTTGACTAGACACATTCTAAGATATTGTAAGTCAGTTTCTGCTCATAGTTTGTGTGGGCGGTGCAGTGCtagattcacaaaaaaatcagaattggATCAACATATATCAGAACGACATGCGAATTTAAGTACGTCTAGTCATCAagaaacgtttgagtgtaaaaaATGCAACTATAAATCAACTTGTAAAAAGGCAGTTGCTGAGCATATGACGAAACACCCCGATGCGGAGTATAGTTGTAAGAGTGGGAGGTGTAAGCAATGTGGTGCGAAATTCCGGGATAAACTGAGGCTGGACGAGCACATAATCAGGAAACATGCGTCGGATTCTGGCGAAACGCATTCCTGTGAACATTGCACTTATAAATGTAGTACAAAAGATGAATTGGCCGATCATATGTCCAGACATATTTATCGCAATTGCGTGCATTGCAACAGGGTATTCAAACGTAAGATTGCTTTCGATAATCATATCATACAAAAACATCCAGCTTTCATTTCATCAGTTTCTTCCAAAATACATAATTGCAAGGATTGTACATACAAAACGACTTTGTTGGCTGAACTGCGAAAGCATAGTTTGAAGCACCGTGAGTCAGCAAGCAAACGTAAAGTTACTTGTGAATATTGTGATGTGATGTTCAAACGCCAAATAGCGCTGGACAATCACGTAGTGAAAAGACATCCTGAGTACATCGGTACAATTAGTCATAAATTGCATACCTGCACAAATTGCGCGTATAAAACCACAATTAAAAGCAATTTGACTAAACATCTGTTAATAAAACATTCTGAAGCTCCTCCTATTCCAAACCCTGTGAAATGTCCACAGTGTGATGTCGTATACAAAAGCAAAGTTACGTTGGATGACCATATAGTCAAGAAACATCCCAACTATACAGATTTGGTTGCTAGTAAAGTGCATGAATGTAGGAAATGCGGGTATAAAACTGCCATCAAAAGTGGCTATTATAAACATGTGTTGAGACATTGTGAAAGCTCGTTAGATGAAACAAATGTTAAACAAGAATTTCCCGAGCATGAAGATTCTCAAATCGTAGAAGGTGAGATAATTGAGCAGTACGTTCCCAAGTACAGCATCTGTTTGCATTGCAACGTGTTGTACAAAAGCAGAACTGCCTTGGATCATCACATACTCAAAACGCATCCTGATTCAATAGCTTCAGTTacaagtaaaataaatgtatgcaGTGTGTGTGGATTCAAAACGGTCAGAAGTAAAGCAATTCTGGATGACCATACACTTCAAAGCCATCCAGATTCTATATCATTAGTTACTAGTGAGATACATGGATGTATGAACTGTACCTTCAAAACTACGGTAATGCACAAATTTATCAAGCACTCTGCCACACACGTAATACGTCCCGCTCCCCGGTTCAAATGTGTACATTGTAATCTGCCTTACCGCAGTCAGGTGGCGCTGGATGATCATATAATCAAACACCATCCAAATTTCATTGTTTCGATTCACGGTAAAATACAGAGCTGTACGATGTGCGACTTTAAAACCGCCAAAAGTAAACCGGTACTGGATGATCATATACTGAAAAAGCATCCAAATTCTGATGCATCGGTTACTAGTCAAGTGAAAGAATGTGCACAATGTGCTTTCAAAACTACCAAAAGTCAAACATTGTTAGATGACCACGTAGTTAAAAAACATCCGGAAGCAATTGCGTCAGTTACTAGTAAAATTTATGAATGTACACAGTGTCCTTTGAAAACTACGATAAAATGTAACTTCAGCAAACATCAGTCGATACATGCTCAGACGGTACCGTGA
- Protein Sequence
- MPRRCFVPGCKSGLWSEKERLKINGLHVPHMFYAPKNKVEEWQTKIGWTAKPLTSTSAVCENHFLPEDILSDWKHTGPDGRLVSIPRERVSLHPDAVPCIFTSLASDKSDSTTLTQVIDEKQSVNNRYAHKYMKMRTGKRTTEENIEEVKSTTSTDTVKIENINPIELTTEADMESIRTCEPSNVVLERIKVECSYDESECKQISEEESIISKNIDQSKPIEQLFIKKEIDTFDMVMNRMHNEGVDVRSWDKYNLSQHLEADEHEVKVKIEKSESETHISGDMNATDTFDHIKSENEPLIDPELHSFQQKEIYEPIQEEIVSRAFSCYDCSYTTFCKNNLTQHMSVHAGLIPSKYICSQCNRGYQTKSTLDEHTIKHHPKLIASVTSKIHKCTECSYKTVMKPSLARHMLIHPKTASSFRFRYCAHCDASFKSKAALNDHILRKHPDSSQLLSCKIYLCANCPYKTTKKDHLVVHMLKHSGAASKYNIFKCQHCNAKFKFGVVLDDHILRKHPNYVSTVSSKIYKCINCAYITTRNSFLTRHILRYCKSVSAHSLCGRCSARFTKKSELDQHISERHANLSTSSHQETFECKKCNYKSTCKKAVAEHMTKHPDAEYSCKSGRCKQCGAKFRDKLRLDEHIIRKHASDSGETHSCEHCTYKCSTKDELADHMSRHIYRNCVHCNRVFKRKIAFDNHIIQKHPAFISSVSSKIHNCKDCTYKTTLLAELRKHSLKHRESASKRKVTCEYCDVMFKRQIALDNHVVKRHPEYIGTISHKLHTCTNCAYKTTIKSNLTKHLLIKHSEAPPIPNPVKCPQCDVVYKSKVTLDDHIVKKHPNYTDLVASKVHECRKCGYKTAIKSGYYKHVLRHCESSLDETNVKQEFPEHEDSQIVEGEIIEQYVPKYSICLHCNVLYKSRTALDHHILKTHPDSIASVTSKINVCSVCGFKTVRSKAILDDHTLQSHPDSISLVTSEIHGCMNCTFKTTVMHKFIKHSATHVIRPAPRFKCVHCNLPYRSQVALDDHIIKHHPNFIVSIHGKIQSCTMCDFKTAKSKPVLDDHILKKHPNSDASVTSQVKECAQCAFKTTKSQTLLDDHVVKKHPEAIASVTSKIYECTQCPLKTTIKCNFSKHQSIHAQTVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -