Basic Information

Insect: Bruchidius siliquastri
Gene Symbol: -
Assembly: GCA_949316355.1
Location: OX438537.1:535395-538751[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.26 20 6.1 0.6 2 23 9 31 8 31 0.94

2 16 0.16 12 6.8 3.5 1 23 43 65 43 65 0.98

3 16 2e-05 0.0015 19.0 2.2 1 23 84 106 84 106 0.98

4 16 0.0011 0.081 13.6 0.7 1 23 109 131 109 131 0.98

5 16 0.022 1.7 9.5 3.9 2 23 142 164 141 164 0.90

6 16 0.0093 0.69 10.6 0.6 1 23 176 198 176 198 0.99

7 16 0.0016 0.12 13.0 1.6 1 23 253 275 253 275 0.98

8 16 0.026 1.9 9.3 0.5 2 23 286 308 285 308 0.95

9 16 0.017 1.3 9.8 1.6 1 23 320 342 320 342 0.98

10 16 0.42 32 5.4 1.1 2 23 368 390 367 390 0.94

11 16 0.00014 0.01 16.4 5.6 1 23 402 424 402 424 0.97

12 16 0.0039 0.29 11.8 0.8 1 23 427 449 427 449 0.97

13 16 0.0069 0.52 11.1 3.6 2 23 460 482 459 482 0.95

14 16 0.029 2.2 9.1 0.6 1 23 494 516 494 516 0.98

15 16 0.83 62 4.5 0.3 2 23 525 548 524 548 0.90

16 16 4.1e-05 0.0031 18.1 1.8 1 23 560 582 560 582 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.26	20	6.1	0.6	2	23	9	31	8	31	0.94
2	16	0.16	12	6.8	3.5	1	23	43	65	43	65	0.98
3	16	2e-05	0.0015	19.0	2.2	1	23	84	106	84	106	0.98
4	16	0.0011	0.081	13.6	0.7	1	23	109	131	109	131	0.98
5	16	0.022	1.7	9.5	3.9	2	23	142	164	141	164	0.90
6	16	0.0093	0.69	10.6	0.6	1	23	176	198	176	198	0.99
7	16	0.0016	0.12	13.0	1.6	1	23	253	275	253	275	0.98
8	16	0.026	1.9	9.3	0.5	2	23	286	308	285	308	0.95
9	16	0.017	1.3	9.8	1.6	1	23	320	342	320	342	0.98
10	16	0.42	32	5.4	1.1	2	23	368	390	367	390	0.94
11	16	0.00014	0.01	16.4	5.6	1	23	402	424	402	424	0.97
12	16	0.0039	0.29	11.8	0.8	1	23	427	449	427	449	0.97
13	16	0.0069	0.52	11.1	3.6	2	23	460	482	459	482	0.95
14	16	0.029	2.2	9.1	0.6	1	23	494	516	494	516	0.98
15	16	0.83	62	4.5	0.3	2	23	525	548	524	548	0.90
16	16	4.1e-05	0.0031	18.1	1.8	1	23	560	582	560	582	0.98

Sequence Information

Coding Sequence: ATGGCGCCAAGTGAGATGTTCAAAACCTGCGCATACTGTGAAGCGACATTCAAAGGTAAACAAGCGCGAGATAACCATATCCTAAAAAAACATCCCGATTTCATTAAATCAGTTACTAGTAAGATCTACGAGTGCACATCTTGTTCGTATAAAGCAATCAAGAAATGTGATTTCGAAAGGCACTTAAGCACGCATCCTACTAGTATGGATCCTACTTCCAATTCCATGACATCTGTTACAAGCATACTATATGAATGTGAGAAGTGCACCTATAAAACTACCAGAAAAGGTAATTTAACTATGCATATGTCAAGACACTCTGGATATAAATGTGGGAAATGCCGGTATAGAACGACCAAGGAAGATAGCTTAGCTGAACATATGTTGCTGCATCTAGAAGAATCTGATAGTTCTAAGAATCTTAAGTGTCAAAAATGTGATACAGTGTTCAAACGTAAAAGAGCACTAGATTGCCACTTACTCAAGAAACACCCCGATTCGATTGATTCAGTTACTAGTACAATATATCAATGCTCAGACTGCACATACCAGGCTACCACGAAATATGCCATCGATATACATATCAAGAAACATTCTGATAAGCCCACCATGTCTCTACAGTGTGTACACTGTAATACTGTTCCATTTAGCGATCAACTGTCATTGGATAATCACACATTTGCTAACAAATTGTCCCTCGAAAACCACATAGTAAAAAACCACCAAGAATTCATTTCATCTGTAACCAGAACACTATATGAATGTACAAAGTGTCCATATAAAACTGTCAGAAAAGGTAGTTTTGCAACACATAAGTTGAAGCATCCTGAAACGGCCCCCAGTGAAATGCTGAAACCCTGCACATACTGTAAAGCATTATTCAAAAGTAAACCGGCGCTCGACAATCATGTTCTCAAAAAACATCCCGAATTCATTACATCACTCACTACTAGAGTATATGAGTGCACATCTTGCTCCTATAAAGCTGTCAAGAAACGTGACTATACAAGGCACGTGATGACGCATCGTTCTGGCAATATGACTTCTAGTGAAATGCCCTCTAGCGATATGCCATCCAATGATATGACTGCCTCACGTGTCCAATGCTTACATTGTAGTTCAACATTTGTTGAGAAATTTCTACTAGATGACCACGTCATAAAAAAACACCCAGATTTCATAGCATCTGTTACAAGCATAGTACATGAATGTAAACAATGCACTTACAAAACTACCAGGAAAAGTAATTTGACTATGCATATGTCTAAACACTCTGGGTATGAATGTGAGAAGTGCCAGTACAGGACGGCCAAGAAAGAGCGCTTAGCTAAACATCTGTTGCTACATCTAGAAACAACTGATAGTCACAGGCATAAGACATGTCGACACTGTAATGCCGTATTTAAAAGTAAAAGAGCTCTAGATAACCATACACTCAAGAAGCATCCTGATTTCATCGATACACTCACTAGTACAATATTCCAATGCTCGGATTGTCCATATCAGGCTACTAAGAAACGTGACATTGATTTACATATCAAAAAACATTCTGATACCACGATCGCTTCTTTACAGTGTGTATATTGTAATACTGTTCCATTCAGAAATCAACTGTCGTTAGACAACCACATAGTAAAAAGACATCCGAACTTTATTACGTCTGTTACgagtaaaatatatgaatgtactAAATGCACTTATACAACTgtaagaaagaaaaattttgctGCGCATATGTTGAGACATATAGCTTGA
Protein Sequence: MAPSEMFKTCAYCEATFKGKQARDNHILKKHPDFIKSVTSKIYECTSCSYKAIKKCDFERHLSTHPTSMDPTSNSMTSVTSILYECEKCTYKTTRKGNLTMHMSRHSGYKCGKCRYRTTKEDSLAEHMLLHLEESDSSKNLKCQKCDTVFKRKRALDCHLLKKHPDSIDSVTSTIYQCSDCTYQATTKYAIDIHIKKHSDKPTMSLQCVHCNTVPFSDQLSLDNHTFANKLSLENHIVKNHQEFISSVTRTLYECTKCPYKTVRKGSFATHKLKHPETAPSEMLKPCTYCKALFKSKPALDNHVLKKHPEFITSLTTRVYECTSCSYKAVKKRDYTRHVMTHRSGNMTSSEMPSSDMPSNDMTASRVQCLHCSSTFVEKFLLDDHVIKKHPDFIASVTSIVHECKQCTYKTTRKSNLTMHMSKHSGYECEKCQYRTAKKERLAKHLLLHLETTDSHRHKTCRHCNAVFKSKRALDNHTLKKHPDFIDTLTSTIFQCSDCPYQATKKRDIDLHIKKHSDTTIASLQCVYCNTVPFRNQLSLDNHIVKRHPNFITSVTSKIYECTKCTYTTVRKKNFAAHMLRHIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -