Bsil014560.1
Basic Information
- Insect
- Bruchidius siliquastri
- Gene Symbol
- -
- Assembly
- GCA_949316355.1
- Location
- OX438536.1:1559592-1565858[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0023 0.17 12.6 0.7 1 21 186 206 186 207 0.95 2 14 2.1e-06 0.00016 22.1 0.5 1 23 233 256 233 256 0.97 3 14 0.12 9.1 7.1 2.7 1 19 268 286 268 287 0.96 4 14 0.0012 0.089 13.5 1.5 1 23 301 324 301 324 0.95 5 14 0.00026 0.019 15.6 4.5 2 23 370 392 369 392 0.95 6 14 0.056 4.2 8.2 1.3 1 23 404 427 404 427 0.95 7 14 0.01 0.76 10.5 0.8 2 23 435 457 434 457 0.96 8 14 0.002 0.15 12.7 0.6 1 23 469 491 469 491 0.98 9 14 0.012 0.88 10.3 2.7 2 23 502 524 501 524 0.94 10 14 0.0023 0.18 12.5 1.5 2 23 537 558 536 558 0.97 11 14 0.0027 0.2 12.3 2.1 3 23 570 591 568 591 0.92 12 14 0.033 2.5 8.9 3.7 1 23 603 625 603 626 0.96 13 14 0.00026 0.019 15.5 1.4 2 23 635 657 634 657 0.96 14 14 0.0028 0.21 12.3 4.7 1 23 669 691 669 691 0.98
Sequence Information
- Coding Sequence
- ATGGATTCGAACTACCcatcaacaaaaatcaaagaGGAAGTCGACGACAAAAATGTTGATGTAGATGGCCAcataaaactggaaaaaatagaTCCCAGCTACGAGACCAATAATGATTGCATTAAATTTGAGGAAGTGAGGATGAATAATTGGGCTGAATGTGGCTCATCTACATCTGAAACCAACAACCAACCACTCGTAGATGATCTGGGAAGCCTTGAGCATGATGTACCAGATCATATCACACCAGATATGTTGGAGAGGATAAAAAATGAACCTGACACGGAGCAGTGGGATGAACTGAATCCAACAGTAGATGTAGTTGAACAAGTGAAGATGGAGGAGCAGGCAGCAGCTGGACTTGGACTTGAAGACGTGAAGGCTGAACCTCAAGTGGACAACACCAAGGCTGAATATATGGATACGACAGAGCTCACTGAAGAACTGGACATCAAACCTGAAGGGACGTCCAAAGCAGAAGTGCATAGTGCGAGGTTGACAAAATACTTGGAAAAAGGACTGGGAGTAGGACATAGGGGAGCAGAGGGAGAATTATTCATTTGCTATAATTGTAATTACACAGCTCGCAGTAAACGCAATTTAACGAACCACATAAACAATAGTAATGATTGTAATTCGAATCCGAATCGTAAAAAATCATCGACTTTGTATAAGAGATCATATCCCTCTAACGGATACGTCTGCACACAATGTAATAAGGTATTCCGTAGGAAACCAAACTTGGACGATCATATACTCAGAATGCATCCAGAACTAATTTTCTCAGTTTCTCGTAAAATATACGAGTGCCCAAACTGCGATTATAAGACTGTCTTCAAGACTTGTTTTAACCGACATGCGTGGCTGCATCGGCCAGGTGAAACTCCGCCCTTCGAGGTTCACAATTGTACCAACTGCGATGTAACGTATACAAGCAAAGATACGCTGGATGATCATATAATAAGAAAGCATCCAAGCTACATGAGTTCAATCACCAGTAAAGTCCATAGCTGCGCACTATGTACCTTTATAACTGCTAAAAAGTGTAGGTTAGACAGTCATATTCTATCAAAACACCCTAGTGCAGCTTCTAGCTCCAAGTTCAGCACTTGTAAGCATTGCAATAAATCATTTAAATCGAAGGCCACCCTGGACGATCATACGTTGAAGAAGCATCCGAATTATGCGGACACTGTCACGcgtaaaatacataaatgttcTGAATGTAGTTATGAAACGACCATAAAGAGTAGCTTAGATAGTCATACAATTTCCATACATCGTAACGCAGGTTCTGGTGTGAAATGTTCCCACTGCAATGCGAATTTTAGAAGAGAACTAGCGCTAGATGATCATATAATAAGGAAGCATCCCGATTTTATTGCTTCAATCACACGGAAAATCTATCAATGTCCAAATTGTACATTCAAAACCGTTGCAAAGTTTGAGTTGAACAGACATCTACTGGTACATCCTGGTGCGGTTCCTGATCATAAACTGAGCAAATGTGCACATTGTAGTATGACTTTTAAAAGTAAACTTTCGTTAGATAACCATATAGTGaagaaacattcaaattttatagcaTCGCTGACACGGAAAATAATCCAATGTCCACATTGCCCGTATAAGACTATCAAGACGAATGATCTAGACAAACATATCAAGAAGCATACAGGTGCAGTTTCTGATTCTGAACTTAGCACGTGTATACATTGTAACGTGTCGTTTAAAAGAAAAGAGGCGCTAGATAGGCATATCCTGAAAAAGCATTCGATTCATATGACCTCAAAAAGTGATAAACGATTTGAATGTTCGGAATGTACATTTAAAACAAAGCTAAAGCAGAACCTAGACAAACATGTGTCAACGCATCATGGTGAAGTTTCTAGAAAACTTATCACGTGTGAACATTGCAATGCGAATTTTAGAAAGAAAGAATCGCTAGAGGATCatatcattaaaaaacatccaaatttcATTGCATCCGTTACACGCAAAATTCATCAGTGTTCAAATTGTACGTACAAAACTACCAACTTGTCCCATTTGGACAGGCATCTGCTGGTACATCGTACATCAGATAAACACTAG
- Protein Sequence
- MDSNYPSTKIKEEVDDKNVDVDGHIKLEKIDPSYETNNDCIKFEEVRMNNWAECGSSTSETNNQPLVDDLGSLEHDVPDHITPDMLERIKNEPDTEQWDELNPTVDVVEQVKMEEQAAAGLGLEDVKAEPQVDNTKAEYMDTTELTEELDIKPEGTSKAEVHSARLTKYLEKGLGVGHRGAEGELFICYNCNYTARSKRNLTNHINNSNDCNSNPNRKKSSTLYKRSYPSNGYVCTQCNKVFRRKPNLDDHILRMHPELIFSVSRKIYECPNCDYKTVFKTCFNRHAWLHRPGETPPFEVHNCTNCDVTYTSKDTLDDHIIRKHPSYMSSITSKVHSCALCTFITAKKCRLDSHILSKHPSAASSSKFSTCKHCNKSFKSKATLDDHTLKKHPNYADTVTRKIHKCSECSYETTIKSSLDSHTISIHRNAGSGVKCSHCNANFRRELALDDHIIRKHPDFIASITRKIYQCPNCTFKTVAKFELNRHLLVHPGAVPDHKLSKCAHCSMTFKSKLSLDNHIVKKHSNFIASLTRKIIQCPHCPYKTIKTNDLDKHIKKHTGAVSDSELSTCIHCNVSFKRKEALDRHILKKHSIHMTSKSDKRFECSECTFKTKLKQNLDKHVSTHHGEVSRKLITCEHCNANFRKKESLEDHIIKKHPNFIASVTRKIHQCSNCTYKTTNLSHLDRHLLVHRTSDKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -