Bsil016830.1
Basic Information
- Insect
- Bruchidius siliquastri
- Gene Symbol
- sptf-2
- Assembly
- GCA_949316355.1
- Location
- OX438537.1:19062613-19069383[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0018 0.14 12.9 2.0 1 23 156 180 156 180 0.97 2 13 5.1e-05 0.0038 17.8 2.8 1 23 186 211 186 211 0.97 3 13 0.00077 0.058 14.0 1.1 1 23 217 242 217 242 0.93 4 13 0.00024 0.018 15.6 5.6 1 23 245 267 245 267 0.97 5 13 0.00013 0.0099 16.5 0.7 2 23 288 311 288 311 0.96 6 13 0.00014 0.01 16.4 0.8 1 23 317 342 317 342 0.94 7 13 1.5e-05 0.0011 19.4 0.7 1 23 348 373 348 373 0.95 8 13 0.13 9.4 7.1 2.7 1 23 379 401 379 401 0.96 9 13 0.00082 0.061 14.0 3.3 2 23 409 430 408 430 0.96 10 13 0.12 8.6 7.2 1.3 5 21 436 452 434 453 0.92 11 13 0.00014 0.011 16.4 1.9 1 23 462 484 462 484 0.94 12 13 1.4 1e+02 3.8 6.8 1 23 491 516 491 516 0.94 13 13 0.0067 0.5 11.1 0.4 1 23 523 548 523 548 0.94
Sequence Information
- Coding Sequence
- ATGGACATATGTCTTTCAAAAACAGAATCCATTCAAAGTATTAGTGTAAAACAAGAAATTGTCATTTCTAGTAATGTTTCTATTAAAACAGAACCTGATGATGCAGCTGTTTTTGCAGAATCAAATTGTAGTGATGAGTATGGGCAAGACAGACCTGGTTTGGTCAAGGACTTGTTTCTAAAATGTGAAACAAACTCGGATTTGTGGGATAACACCATCCGTAATTATGAATATGGAATTCAAGAAACTTTCGAAATTGAACATGTGAACATTAAGACTGAATCTACTGACACTGATGGAGTGGATTTGAACATCAACAGTGGAATTAACATTTCTACAAGTGGATTATTTACAAAACCTGTGCAAAGACGACAAAGACTGAGCTGTTTTGCCACTATGTGTACCTCGGATTCAGCTAATTCTGAATTGGACATTAATAGCGGTAAAAGAATTTCCGAGAAATCACACAAGTGCTCGTACAATGGATGCAATGTTTCTTACGGAAAGCTTTCCTTGTTGAAACGACATATGATAAAGCATACTGGCGAGaGACCTTATCAGTGTGATATAAATGGCTGCAATAAGTTTTTTCAGCAGCCTTATCATTTGAAACGACACAAATCAACTATACATAGCGGGGCTGATGAGTTTGCCTGTGATGAAAGAAACTGTGAGAAGGTATTCAATGATAGTTTCAGTTTGAAAAAGCATAAAACTAGGGTTCACTTATTACATAAATGCTCACAGTGCTTAAAAGTGTTCAAAAAGAAATACCAGCTTAGAAACCACATCTTTTCACATGGAAGTTTTTCAGATGAgGTAAAGGCAGGGAATGGACAGGACACCTCCAGGGAGTTAAATAAATGTTCTTTTGAAGGATGTGGTGCATCATATAGAAAACTGTCATATCTGACACTCCATATGAGAAAGCATACAGGAGAGAGACCATTTGTATGTGACATAGAGGGATGCGACAAATCTTACACCCAGGGATATCATCTGAAAAGACATAAAGCCAGAGCACATGAGCCAACCAAAGAATATATCTGCAAAGAAAAAGACTGTGGAAAAATACTGAGtgacaaatataatttaaaaaagcataTAGATAGGTACCATTCATTCACTGGTCCATATAAATGTTTGCATTGTATGCAAGGATTCtataagaaatatgttttgAGGAAGCATTTGGCTGCACATTTTGAAGATAGTGGTCCTATCAAATGTAACAAGTGTCATTCGGTATTTCCTACcaggactaattatttaaagCATATGTCCCAACACAAGACATACAGCTGTAACTGTGGAGAAATATTTCAACGTTGGCATGCATTTCGCAGACATAAGAAAAGATACTGCATGGATCAGAAAACTGctcaTATATGCACAGTTTGCAACAAATCTTTCACTACTGGTTTCAATTTGAAACAGCACTCTATAGTACACTCAGAAGTTAAGGAGGTTTTTAGGTGTCACTATTTGAATTGTGATAGGAGCTATCAGTATAAGAAAAATTTGATGTTCCATATAAACCATTTCCATGAAAAGACTGAAACAAGATATGAGTGTCCTTTGCCTACTTGTACCATGACATTTAAAGAGAAGCAATATATGAAGAGACACGTTGAAAATGTGCATATTAACccaaaagaaaagaaaaaagaaagaaagccAAGAAAAGATAAAGGCATACCTAAAGCATATAACCAGATTGTAGCCATGTCAGGTTTGAATCCTGCTTTCAAAAAGCTACTGGAAAATCCAAAAGAAGATGGAAGCAATATCATTCCCAAAGAAAGGAAGCCATTGGACGTTACAACATCATGTGATGCATCCGAGAGCATTAATACTTTGTTGGAAGAACCTGAGGAAAATGTAATTACAATAGAAAAAACTGCAAAAGACGCTAGGTTAAAAGCACCATCAAATGTTATCATAGATATGTTGGAGGTCTGTTATTCCCTAGAAAACTCGCCAGAAAGCAGTACAGATGAAGTTGACACGTCGAAGAATACATCAAAGCCGGGAACTAGTAATTCAAATCACATTGAAATTGGGGATATAGAAGAAGCGACGAATAGTGATGTGCTTCAGGCTGTTCCTGAGGAAATGGAGGGTGATACAATCGAAATGAACGGTGGTTTGAAGGTGGAGTTTGTCGTCTTGTCGTCTGAGATGAATTCCGAAAATGGTCGTGTCGAATCCCTGAAGGAAAGCACTGTTAATCCAGGATTTACTGACACAAATGATTGTTTCTCAGAAACTCTTTCTGTTAAAATCGATTCTGATATAGATGTGATTAAGCTTGCGCAAACGTTTCGCATGCGGTCAAACATCGCCGATTCTTGGACGCTTCACCACGACAACGCGCGCCGCCACACCACGTTGCTGCTTTGGGCGTTTCTACCCAAGCACAGGGTTGACACGTTACCGCACTCTCTCTACATTGCAGATCTTGCTTCGCTGGACATTTTCCTCTCTCCTCGGCTCAAGCAGGACCTCAAAGGAAACCGATACCGCTCCGTACGTGACGGCATGTCTCAGTTGACTCCAATTTGTGGAGAGCTTTGCAGCTGGTGTATAGAATCTGGATAA
- Protein Sequence
- MDICLSKTESIQSISVKQEIVISSNVSIKTEPDDAAVFAESNCSDEYGQDRPGLVKDLFLKCETNSDLWDNTIRNYEYGIQETFEIEHVNIKTESTDTDGVDLNINSGINISTSGLFTKPVQRRQRLSCFATMCTSDSANSELDINSGKRISEKSHKCSYNGCNVSYGKLSLLKRHMIKHTGERPYQCDINGCNKFFQQPYHLKRHKSTIHSGADEFACDERNCEKVFNDSFSLKKHKTRVHLLHKCSQCLKVFKKKYQLRNHIFSHGSFSDEVKAGNGQDTSRELNKCSFEGCGASYRKLSYLTLHMRKHTGERPFVCDIEGCDKSYTQGYHLKRHKARAHEPTKEYICKEKDCGKILSDKYNLKKHIDRYHSFTGPYKCLHCMQGFYKKYVLRKHLAAHFEDSGPIKCNKCHSVFPTRTNYLKHMSQHKTYSCNCGEIFQRWHAFRRHKKRYCMDQKTAHICTVCNKSFTTGFNLKQHSIVHSEVKEVFRCHYLNCDRSYQYKKNLMFHINHFHEKTETRYECPLPTCTMTFKEKQYMKRHVENVHINPKEKKKERKPRKDKGIPKAYNQIVAMSGLNPAFKKLLENPKEDGSNIIPKERKPLDVTTSCDASESINTLLEEPEENVITIEKTAKDARLKAPSNVIIDMLEVCYSLENSPESSTDEVDTSKNTSKPGTSNSNHIEIGDIEEATNSDVLQAVPEEMEGDTIEMNGGLKVEFVVLSSEMNSENGRVESLKESTVNPGFTDTNDCFSETLSVKIDSDIDVIKLAQTFRMRSNIADSWTLHHDNARRHTTLLLWAFLPKHRVDTLPHSLYIADLASLDIFLSPRLKQDLKGNRYRSVRDGMSQLTPICGELCSWCIESG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -