Basic Information

Insect: Bruchidius siliquastri
Gene Symbol: -
Assembly: GCA_949316355.1
Location: OX438536.1:4794828-4799945[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.0069 0.51 11.1 1.1 2 23 68 89 67 89 0.95

2 26 1.7 1.2e+02 3.6 2.1 1 23 95 117 95 117 0.95

3 26 1.7 1.3e+02 3.5 8.4 1 23 120 142 120 142 0.89

4 26 0.026 1.9 9.2 1.7 2 23 148 169 147 169 0.96

5 26 2 1.5e+02 3.3 3.8 1 23 179 202 179 202 0.90

6 26 0.018 1.4 9.7 1.4 2 23 212 233 211 233 0.97

7 26 5e-07 3.7e-05 24.1 0.3 1 23 239 261 239 261 0.99

8 26 0.031 2.3 9.0 0.8 1 10 267 276 267 279 0.91

9 26 0.19 14 6.5 0.2 2 23 327 348 326 348 0.96

10 26 0.041 3.1 8.6 0.9 1 23 354 376 354 376 0.98

11 26 0.79 59 4.6 6.2 1 23 379 401 379 401 0.95

12 26 0.083 6.2 7.7 1.8 2 23 407 428 406 428 0.95

13 26 0.11 8.4 7.2 0.2 3 23 439 460 437 460 0.93

14 26 0.0032 0.24 12.1 1.3 2 23 470 491 469 491 0.97

15 26 9.9e-06 0.00074 20.0 0.5 1 23 497 519 497 519 0.99

16 26 5.2e-05 0.0039 17.7 0.4 1 23 525 547 525 547 0.99

17 26 4.5 3.4e+02 2.2 0.4 1 9 553 561 553 563 0.91

18 26 0.16 12 6.8 2.1 2 23 614 635 613 635 0.93

19 26 0.19 14 6.5 7.3 1 23 641 663 641 663 0.98

20 26 0.0016 0.12 13.0 2.1 1 23 666 688 666 688 0.97

21 26 0.0098 0.73 10.6 1.1 2 23 694 715 693 715 0.96

22 26 2.4 1.8e+02 3.1 5.4 1 23 724 747 724 747 0.89

23 26 0.027 2 9.2 2.8 2 23 757 778 756 778 0.97

24 26 0.00056 0.042 14.5 0.9 1 23 784 806 784 806 0.98

25 26 3.5e-05 0.0026 18.3 2.6 1 23 812 834 812 834 0.99

26 26 0.00085 0.064 13.9 0.4 1 21 840 860 840 861 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.0069	0.51	11.1	1.1	2	23	68	89	67	89	0.95
2	26	1.7	1.2e+02	3.6	2.1	1	23	95	117	95	117	0.95
3	26	1.7	1.3e+02	3.5	8.4	1	23	120	142	120	142	0.89
4	26	0.026	1.9	9.2	1.7	2	23	148	169	147	169	0.96
5	26	2	1.5e+02	3.3	3.8	1	23	179	202	179	202	0.90
6	26	0.018	1.4	9.7	1.4	2	23	212	233	211	233	0.97
7	26	5e-07	3.7e-05	24.1	0.3	1	23	239	261	239	261	0.99
8	26	0.031	2.3	9.0	0.8	1	10	267	276	267	279	0.91
9	26	0.19	14	6.5	0.2	2	23	327	348	326	348	0.96
10	26	0.041	3.1	8.6	0.9	1	23	354	376	354	376	0.98
11	26	0.79	59	4.6	6.2	1	23	379	401	379	401	0.95
12	26	0.083	6.2	7.7	1.8	2	23	407	428	406	428	0.95
13	26	0.11	8.4	7.2	0.2	3	23	439	460	437	460	0.93
14	26	0.0032	0.24	12.1	1.3	2	23	470	491	469	491	0.97
15	26	9.9e-06	0.00074	20.0	0.5	1	23	497	519	497	519	0.99
16	26	5.2e-05	0.0039	17.7	0.4	1	23	525	547	525	547	0.99
17	26	4.5	3.4e+02	2.2	0.4	1	9	553	561	553	563	0.91
18	26	0.16	12	6.8	2.1	2	23	614	635	613	635	0.93
19	26	0.19	14	6.5	7.3	1	23	641	663	641	663	0.98
20	26	0.0016	0.12	13.0	2.1	1	23	666	688	666	688	0.97
21	26	0.0098	0.73	10.6	1.1	2	23	694	715	693	715	0.96
22	26	2.4	1.8e+02	3.1	5.4	1	23	724	747	724	747	0.89
23	26	0.027	2	9.2	2.8	2	23	757	778	756	778	0.97
24	26	0.00056	0.042	14.5	0.9	1	23	784	806	784	806	0.98
25	26	3.5e-05	0.0026	18.3	2.6	1	23	812	834	812	834	0.99
26	26	0.00085	0.064	13.9	0.4	1	21	840	860	840	861	0.94

Sequence Information

Coding Sequence: ATGATACTATTTTTCAGACGGAAGAGTAATCTAACAGCAAGCAACAAAAGAAGGACACTACAAAGGAAAAATCATCCAGAAATCACTTCAAACAGCAAAAGGAAATGCACAAACAAactatcaaaaaacaaaactcCCAAAACTATAACCGATTCAGATTTAAAAAGCTTCATCAACATGAACGCAGTTTTGTATCCTTTAGAGTGCAAACAATGCCCAGAAACATTCACATCACATCTTGATCTCGCTCTTCATTCGTCCAAACACCAAGACACTGGCCTCTATTCCTGTCATCTCTGTAACCATTTGGAACAGTCTTCAGATTCATTAGCAACACACATCGAAACGCATGACAGTTTTTGCTGTTTGGAGTGCAAGAAAgtctttaaaacaaaattttctgcTTACAAACACTGCCAATCTCACTCTGCGGAATATGTGAAGTGTGAACTATGCGGACTGAAATACAAAGCCAAGTACCTGAAAAGCCACCAGAAAAAGAAGCATTCCGGAAACGCTCCTGAGAAAAAGTTGCATCACTGCACGATATGTAGTAAATCCTATCTATACTATGCTGGTCTTAGAATCCATTATTCTCAGAAACACAAAGAAATGGGCATTGATCTCTCTGTGGTTTGTGACGTGTGTGGTAGGAGACTTTCTTGTAAAACTAAACTGATCGAACATCAACGAAGCCATAATGGGCAAAAGCCGTACGTTTGCACAGTTTGTGGAAGAGGTTTTGTTCAGAAAAGCTTGTTGGTATCGCACACCAGGACTCATACTGGAGAAAAACCCTACGTTTGCTCTTATTGCGGGAAGAGTTTCGGGCAGGGGGCGCCTTATAGgtCAAGCAGAAAGAGTCGAAGGACAAGAAGCGTAAAAGACGAGGACGGAAAATCAAAACTTTCCAGGAAAGCAATTTCAGAACTGCAGCTAGATAATTTCATCAACACAAACGCTGTAGTTACACCTTTAAAGTGTGAATCATGTCCGGATACATTCGCCTCTCACGTAGACCTCGCTTTACACTCTATAACGCACAACGACTCAGATTCCTACACCTGCCACATCTGTGACCAATCAGAGCCGACCACGGAGAAAATCATAACGCACATCCGCAGACATGACACGTTCTGCTGCTTGAAATGCAAGAAAATCTTCAAAAGCAAGCTGTCAGCCTACAAGCACTCAAAGTCGCACCCTGTTGAGTATGTTGAATGCGACATTTGCGGCCTAAAAGTCAAAagcaaatgtttgaaaaatcacATCAGGAACAAACACGTCGAAGATGCTCCGAAGAAAATGTACGGATGTTCGGTGTGTCCTAAGGTTTACCTCAACATAGCGAACCTCAGAAGTCACTACTCGCAAAAGCACAGAGAAGTGGGTATTGACGTTTCGGTGGTCTGTGACGTATGTGGGAAGAAGCTGTCGTGCAAAACGAAGCTGGTGCAACATATGCGGATTCATACGGGACATAAGCCTTATGTTTGCTCGTATTGTAAACGAGGCTTCGTACAGAAGACTTTGTTGGACGCACATGTGAGGACTCACACCGGGGAGAAGCCGTATGTCTGTTCTTATTGCGGGAAGAGATTCGCGCAAGGAGCGCCATACAGATACCATATCAAAACGCATACTGGAGAGAAGAAGTTTTCGTGTACGCTTTGTGGGAAGAGGAAAAGGAAAACACTACTGTCTAGGAAGAAGATCTACACCAATAGGAAAGCCATTcaagtaaaaaatcaaaaagaaaaccAGGTATCGATTATAGAAATCATCGAGAAGCTGAACGACGAAAATTTCATTAATCTCAATGCAGTGACGGTGCCTTTGCAATGTCAGTCTTGCTCAAAAACATTCAACTCCCACTTATCACTAGGTGTGCACTCCAAAGAACATAATGTCGATCGAACATTTTCTTGCCACATATGcaactacaaaaataaatcctcGAGGCACTTTCAAACGCATATAAACAATCACGACCAATACAAATGTCAAAAATGCAATAAGGTGTTCAAGTTCAAACTGGCAGCTCTCAAACACGCCAAATCTCACCCTCCAGTGTTCATAGAGTGCGAGATATGCGGGAAGCAGCTGAAACGAGACAGTTTTAAGAATCATCAAAAGAAAATGCACTCGGAAAAGCCACAGGAGAGCGTTTTCAAATGTTCGCTGTGCGATAAATCCTACCTTTGTAAAACAAGCCTTAAAAATCACTATTCGTATAATCACAGAGAGCTGGGCATCGATGTCTCTGTGGTATGCGATGTCTGTGGCAAGAGGCTGTCCTGTAAGAACAAGTTTCTGCAGCATCAGCGAACTCATACTGGTGAAAGGCCATTTGTCTGTTCAGTGTGCTCGAGGAGGTTCACCACCAAAGAAATTCTTTTATCACATACCAGAGTGCACACTGGCGAGAAACCGTTCGAGTGCAAGTATTGTGGGAAGAAGTTTGCTCACGATGGACCATTTAGatACCACATAAGAACACATACTGGTGAGAAGTTACATTATTGCCCTCTTTGTAGGAAAGGATTTATCTCAAAAGCAAATATGAGAATTCATGTTAAGAGTTGTGATGGTATACTTAATAAAGATTag
Protein Sequence: MILFFRRKSNLTASNKRRTLQRKNHPEITSNSKRKCTNKLSKNKTPKTITDSDLKSFINMNAVLYPLECKQCPETFTSHLDLALHSSKHQDTGLYSCHLCNHLEQSSDSLATHIETHDSFCCLECKKVFKTKFSAYKHCQSHSAEYVKCELCGLKYKAKYLKSHQKKKHSGNAPEKKLHHCTICSKSYLYYAGLRIHYSQKHKEMGIDLSVVCDVCGRRLSCKTKLIEHQRSHNGQKPYVCTVCGRGFVQKSLLVSHTRTHTGEKPYVCSYCGKSFGQGAPYRSSRKSRRTRSVKDEDGKSKLSRKAISELQLDNFINTNAVVTPLKCESCPDTFASHVDLALHSITHNDSDSYTCHICDQSEPTTEKIITHIRRHDTFCCLKCKKIFKSKLSAYKHSKSHPVEYVECDICGLKVKSKCLKNHIRNKHVEDAPKKMYGCSVCPKVYLNIANLRSHYSQKHREVGIDVSVVCDVCGKKLSCKTKLVQHMRIHTGHKPYVCSYCKRGFVQKTLLDAHVRTHTGEKPYVCSYCGKRFAQGAPYRYHIKTHTGEKKFSCTLCGKRKRKTLLSRKKIYTNRKAIQVKNQKENQVSIIEIIEKLNDENFINLNAVTVPLQCQSCSKTFNSHLSLGVHSKEHNVDRTFSCHICNYKNKSSRHFQTHINNHDQYKCQKCNKVFKFKLAALKHAKSHPPVFIECEICGKQLKRDSFKNHQKKMHSEKPQESVFKCSLCDKSYLCKTSLKNHYSYNHRELGIDVSVVCDVCGKRLSCKNKFLQHQRTHTGERPFVCSVCSRRFTTKEILLSHTRVHTGEKPFECKYCGKKFAHDGPFRYHIRTHTGEKLHYCPLCRKGFISKANMRIHVKSCDGILNKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -