Basic Information

Insect: Bruchidius siliquastri
Gene Symbol: ham
Assembly: GCA_949316355.1
Location: OX438531.1:34182886-34192778[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.4 3.3e+02 2.2 0.1 2 23 46 68 45 68 0.83

2 9 0.00042 0.032 14.9 2.1 1 23 75 98 75 98 0.95

3 9 8.7e-08 6.5e-06 26.5 4.2 1 23 104 126 104 127 0.96

4 9 3.5e-06 0.00026 21.4 1.7 1 23 133 155 133 155 0.95

5 9 2.6e-05 0.002 18.7 5.0 1 23 161 183 161 183 0.99

6 9 0.0017 0.12 13.0 2.4 2 21 191 210 190 211 0.95

7 9 3.3e-08 2.5e-06 27.8 0.8 1 23 587 609 587 609 0.98

8 9 1.2e-06 8.7e-05 22.9 1.6 1 23 615 638 615 638 0.97

9 9 9.2e-06 0.00068 20.1 3.4 1 23 644 666 644 666 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.4	3.3e+02	2.2	0.1	2	23	46	68	45	68	0.83
2	9	0.00042	0.032	14.9	2.1	1	23	75	98	75	98	0.95
3	9	8.7e-08	6.5e-06	26.5	4.2	1	23	104	126	104	127	0.96
4	9	3.5e-06	0.00026	21.4	1.7	1	23	133	155	133	155	0.95
5	9	2.6e-05	0.002	18.7	5.0	1	23	161	183	161	183	0.99
6	9	0.0017	0.12	13.0	2.4	2	21	191	210	190	211	0.95
7	9	3.3e-08	2.5e-06	27.8	0.8	1	23	587	609	587	609	0.98
8	9	1.2e-06	8.7e-05	22.9	1.6	1	23	615	638	615	638	0.97
9	9	9.2e-06	0.00068	20.1	3.4	1	23	644	666	644	666	0.99

Sequence Information

Coding Sequence: ATGAACCTTGAGCAAGCTGTGTCACTGTTCCTATTACCTAAAAATATCCCAGGAAATTGTATTCTTGTTTCAGCATCTCAACACAGTGGAACTGTAGACGAAAGGGAAGTGGATGAGGAAGATGACTCACAAATTCGATGTTACGTGTGCGATCAGACTTATCTTGATATTGACAAATTGGATGAACATCTGATACAGGCGCACAACCATCAGAAAAACAAGTTCAAATGCAATTATTGCTACAAAGCTTATTCGGACCGACCTTGTTTGATCAAGCACAAAGCTGTTGAACACGGGGAAACTAAAAAGTATCACTGTGAAAACTGCACCAAGATTTTCACTGATCCCAGCAATCTACAAAGGCATATCAGGACCCATCACGTTGGCGCTCGTTCACACGCCTGTCCAGAGTGTGGAAAAACGTTCGGAACATCTTCTGGACTGAAACAACATACACATATTCATTCTTCTATCAAGCCCTTCCAGTGTGAAGTCTGCTTCAAGGCGTACACGCAGTTCTCGAACTTGTGCCGGCACAAGCGTATGCACGCCGATTGTCGCATGAGGATCAAGTGCGTGAAGTGCGGCCAGTGCTTCACAACGGTGACCTCCTTATCGAAGCACAAGAGGTTCTGCGACTCCACGGCACCCGCTACAGCCCTCACCGCCCCCGTGCTGTCTTCGTTGAGCACCATGACCAGCAACAATCCCTACATGTATAGGCCCCCAGGTGCTCCACTTCCTTTCTCCCTCTCCTACCCCTACCCGCCACTGTTTCCACATAACATCTCTATCCCGCCTTTCGTCTTCAATGGCATGTTGAAGAGGGAATTCAACCAGCTACCGGACGAACACTCAGCAGCTGCGCCTCTAAAGAAGCTGAGATTGCACAGTCCagatcaaaatctcaaattggaAATAAAGTCGGAAAGGATCACTCCCACTAGAGAAGTTCCTATGGTTAAGTCGGAAAGAGAGGCTTCTGCGATCAAACTGGAGAAGGAGGCTTCTATTGGGAAACGTGAAGCTTCCAGGATGAAGTCAGAATGGTTTCCTATGGAGTTTTCCATGATGAAATCGGAAACAGTTACTCCTCCCAGGGAAAACGCCATGGTGTCCAAGATAAGCCCACCTAAGGCATCAGAAGCTGATGTTGTTCCATCACCTGCAAGACCAAATAACACACATGtttCGCACCCTAGCAGTTCATGTACCAACATAGCAGAAGACGAAGAACATTTCCCGACCGATTTATCGAAAAATTCAGAGAAAAGCTTAAGGGTGCCTTCATCCCCTAGTAGCGAAGATGGAGAGCAGCCTTTAGATTTGAGTGGATGGAAGAGAGCACAGATGGTGCCAGAAATGCAGGAGAAATCGGAATGTGAATCCAGCCCATCAAAGCAGTCTCCAGAACTACCCCCATCGCCTCAGTCAGTGAACGATGGAACAATCGACGTACCAGATACGGAAGAAGAGAAAACCCCCGAGATGGAGAAGATCCCCATCCCTCCAATGGTGTGCCCGCGACCGATTCACCCAATGCTGGAGGCGTGCAGACCCAAGTATCATCCTTACATGTGCTACGAAACGCAGCAGGAAAGCGACAGGCTCCTACATTCTGCCTACAATCAACTACGGTTCCCCTTTTTGCTGCCTCACCAGAGGTTCGATTTGCCCCGACCTGGTATGCAGGAATTGAATGGGATCAGACCGTTCCACAACGTGATGCAGCAGCAAAGTCAAAGCAAAAAAGACAGGTACGCCTGTAAGTACTGCGGGAAGCTTTTCCCTAGATCAGCCAACCTAACCAGACATCTCCGAACCCACACTGGCGAGCAACCTTACAAATGCAGGTACTGCGAGAGGTCATTTAGCATATCCAGCAACCTACAGAGACACGTACGGAACATCCACAACAAGGAAAAGCCATTCAAATGTCCACTTTGCGAGAGGTGTTTTGGACAGCAGACTAATTTGGACAGGCATCTGAAGAAACATGAGGCTGATGATGGCAATGGAGGTGTACCAGTTGCAGATTCTCCAGGCAGTAGCAACGAAAACGAACGAGAAGACCATTATTTCGACGAAATTCGCACCTTCATGGGCAAAGTCACCCACGGAGCAAGCGACTACTACAATCCCACTCGACTATATGCATCTCCCACCAACAACGACAATGATATTGATGTGGTGGGTAAAGATGAAGATGACGAAGAATCTTTCACGACAGAAGCAAGTGTGGAAACTTACGATCCAAAGTTGAACAAGGAGAAGGATGGGCTCTTGAACAACAATCCTATTGAGGTGTCCACTTAG
Protein Sequence: MNLEQAVSLFLLPKNIPGNCILVSASQHSGTVDEREVDEEDDSQIRCYVCDQTYLDIDKLDEHLIQAHNHQKNKFKCNYCYKAYSDRPCLIKHKAVEHGETKKYHCENCTKIFTDPSNLQRHIRTHHVGARSHACPECGKTFGTSSGLKQHTHIHSSIKPFQCEVCFKAYTQFSNLCRHKRMHADCRMRIKCVKCGQCFTTVTSLSKHKRFCDSTAPATALTAPVLSSLSTMTSNNPYMYRPPGAPLPFSLSYPYPPLFPHNISIPPFVFNGMLKREFNQLPDEHSAAAPLKKLRLHSPDQNLKLEIKSERITPTREVPMVKSEREASAIKLEKEASIGKREASRMKSEWFPMEFSMMKSETVTPPRENAMVSKISPPKASEADVVPSPARPNNTHVSHPSSSCTNIAEDEEHFPTDLSKNSEKSLRVPSSPSSEDGEQPLDLSGWKRAQMVPEMQEKSECESSPSKQSPELPPSPQSVNDGTIDVPDTEEEKTPEMEKIPIPPMVCPRPIHPMLEACRPKYHPYMCYETQQESDRLLHSAYNQLRFPFLLPHQRFDLPRPGMQELNGIRPFHNVMQQQSQSKKDRYACKYCGKLFPRSANLTRHLRTHTGEQPYKCRYCERSFSISSNLQRHVRNIHNKEKPFKCPLCERCFGQQTNLDRHLKKHEADDGNGGVPVADSPGSSNENEREDHYFDEIRTFMGKVTHGASDYYNPTRLYASPTNNDNDIDVVGKDEDDEESFTTEASVETYDPKLNKEKDGLLNNNPIEVST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -