Bsil014847.1
Basic Information
- Insect
- Bruchidius siliquastri
- Gene Symbol
- -
- Assembly
- GCA_949316355.1
- Location
- OX438536.1:4819454-4825272[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.038 2.8 8.7 0.0 2 23 101 122 100 122 0.94 2 17 0.0037 0.28 11.9 1.8 1 23 156 178 156 178 0.90 3 17 0.00011 0.0084 16.7 2.5 1 23 184 207 184 207 0.98 4 17 0.00019 0.014 16.0 1.7 1 23 219 242 219 242 0.94 5 17 0.014 1.1 10.1 3.4 3 23 253 273 252 273 0.99 6 17 4.5e-06 0.00034 21.1 0.2 3 23 281 301 279 301 0.97 7 17 4.1e-06 0.00031 21.2 0.7 1 23 307 329 307 329 0.98 8 17 1.9e-05 0.0014 19.1 0.0 3 22 337 356 336 356 0.95 9 17 1.3e-05 0.00095 19.7 0.2 1 23 641 663 641 663 0.97 10 17 8.6 6.4e+02 1.3 0.4 1 23 695 717 695 717 0.90 11 17 4.3 3.2e+02 2.3 0.5 1 14 723 736 723 745 0.74 12 17 0.24 18 6.2 5.4 1 23 751 774 751 774 0.92 13 17 0.0043 0.32 11.7 4.8 1 23 784 806 784 806 0.97 14 17 0.00053 0.04 14.6 0.5 3 23 813 833 811 833 0.97 15 17 0.00023 0.017 15.7 0.5 1 23 839 861 839 861 0.98 16 17 6.3e-07 4.7e-05 23.8 0.4 1 23 867 889 867 889 0.98 17 17 0.0035 0.26 12.0 0.1 1 22 895 916 895 916 0.96
Sequence Information
- Coding Sequence
- ATGATAATTTTTAGGTTAGAACTCCTGTATGGTCCTGTACGAatcaaagaagaagaagattctGGAACAGACTGGGAACCTACGTCCGAAGAAATCAAAAggaaaaaattgtcaaaatccgaaaagcataaaatcaaaaaagaaaaaaaactccGCAAAGGTCGAAAACCGAAAAACGCCGaaagaatcaaaattaaaaaaacaaaacaagaaaaaaggGATAAAAAAGAGAAGAAATTTAAAAGAGCGAAACGCAACACAGAAAGTCATCCACCGTTGCCAGACCTAGACGAACCCATCGAATGCGAAGTGTGCAGCGAAACCTACAAAAACAACGTTGCCTTCGCATTACACTCCATAGTCCACAATGAAGACGGAAAGTATCACTGTCACATGTGCGCTTACAAGAACGCTTCCAAGTACCACATGGAGATGCACGTCCGTGCCCACGAAGGTGCGACCAAGTACAAATGCGAAATCTGCAACAAAGCCTTCACAGTTAGCACTCACGCGGCTGAACACAAGTACTTCCACACTGGCGAGAAACCCTTCCAATGCGAAATCTGCGGCAAACATTTCATGTTCTCTTGGTTTCTGGCGTCTCATAGGAGAACGTCTCATTACGAGATCCTCACCGGAACGCCTCTAGTAAAATTCGACTGTACCATATGCAACAAGCATTACGCGTCAGCGTCCGGCTTACGGagacataacctcaaaaaccATAACGATACCGGTGTCGATCTCAGCGTTCTGTGTGATATTTGCGGGAAGAGGTTATCGAGTAGGGAGAAATTGAAGTTTCACCATAGAACTCACACCGGTTATAAACCGTACGGCTGTCAAATTTGCCCAAAAAGTTTTTCTAAGAAAGAGCAATTGATAGAGCACGTGAGAGTTCACACTGGTGAGAAGCCTTACATTTGTAAATATTGCGGCAGGGGATTCACACAGCGTACGCCGTTGCGTATCCACGAACGCACTCATACTGGAGAAAGGCCGAATATCTGTCCCATATGCGGCAAAGGCTTCATCTCCAAGACTGCTTTGGAAAGTCATATCCGTAGTTGCTATAACACTCCACAGATGCTCATCCAAGGCCCTTTACAGTATCCGTACTATCCGTCTAACGCCTCCACGCCCATGACGCCGTCTTCAGTGCATTCCGAAGCTGAAGCTAAGTACTCTTTGGCAGAATCTGAGGCCAAGTATGCAGCATTGATGGAGGCAGAGGCTAAGTTGGGGTTGCCGTTGGCCGACCCAGAGTCAAAGTATTCGTTGACGGAAGCCTTCATGGCACCTCAGAGGGCGTCGAATTCAGCGCAACACACATTTCCGTTGGATTATTTTACACCCATAGTGACCATTAATGAAGCACCATCTCAGATGTCTACATCACCAaaaataaagaagataaagataaaaattGAGGGAAAAGAAGGTGGTGAACTGTCAGGGGAGATTGTTAAGCGTAAAAGAGGCAGACCAAAGAAAAGTTCTAACAAAAATAACAACACCGATGCAGAATGGGTGACTGAAGGTaaacacaaaaagaaaaaagaaaagacaCAAAAGAAGCAAAAAGGTAAGGATTCTAAATCTTCAAAACAAGCAAGTAATACTGAAATTGTAAATGAAAACTTATCCGACTCAGCTGTCAAACCTGAACAGATTGATGttgagataaaaaatgaaatcaaagaAGAACCATCTGAGGACTTACCAATGATTCTTCCATTATCTCAGGTCGATGTCAAGCCAATGTCACCTGATTCTGGTGAACCTAAAAGGTTCAAATGCCCTTTATGTAGTAAAGATGATAATGATTATACAGAGCGTACCCCCTTAGAACTGAAACAACACTATAGAGATAGACATCCAGGCAAAAGGCTGAGACAATCACGATTTTCCAGTGAAGTGCATCCATGTGATGTTTGCGGGAAAGAGTTCAAAACAGCCAATGCTGTCAGAGAGCACATGGAAACTCACAGCAATTACTTTTACTGCGAAATATGCAATGGTTCGCAAAAAAAAATCCTGGAACACATAATTCACATGAGAATTCATTCTGACATTGGGCTGTTTCAGTGTTTGATGTGCAGCTTCACCACTCCTGATATAAATTTTATCACGGAACATGTGAACAATCATGAGgatctattgaaatatttgtgtAATACGTGCAAAAAAGGCTTCCAGATACTTCCTTGGTTTCAAGAGCATGACAATTACCACACCGGCCTGAAACCATTCGATTGTGAGTTTTGTGGCAAGTGTTTTTTGTACTCTCGTTACCTTCATGCTCATAAACTGTACATGCATAAAGAAGACATAAACTTTCCCCATCTACATGAATGCGTTATCTGTAAGAAACAATACCAACATAAAAACAGTCTCAAGCTTCACATGAATCTGCACACTGGGAATTTCTCAATATGCGATATATGCGGTAAAATTCTGTCTAGCAAAGAAAAACTGAAATTCCACATCAGGACCCATACAGGATACAAGCCGTACAACTGTAGTTATTGTGAAAAGTCTTTCACAAAGAAACCTATTCTAGTCGAACATATTCGAATTCATACAGGCGAAAGGCCTTATATTTGTGATTACTGTACCAAAGGATTTTCCCAGCGATCCAGCCTAGTCATTCACATGCGAGGCCACACTGGCGAGAGGCCGTACGTATGCCAGTTTTGCACCAAAGGATTCGTGGCCAAAGCAATGTTGAACATCCATCTGAAGACCTGCAAAGGTGTGATTTTCACAAGAGAAGATTTTCTGACCCCTAGTCCAAGCATTGCTGATTCTAAGCCTTGCAAAAACGTTTTTGCAGGAGAAGATTTTCCAACGCCTATTGCTTTGCCTCCAGCGTTGCCTATATAG
- Protein Sequence
- MIIFRLELLYGPVRIKEEEDSGTDWEPTSEEIKRKKLSKSEKHKIKKEKKLRKGRKPKNAERIKIKKTKQEKRDKKEKKFKRAKRNTESHPPLPDLDEPIECEVCSETYKNNVAFALHSIVHNEDGKYHCHMCAYKNASKYHMEMHVRAHEGATKYKCEICNKAFTVSTHAAEHKYFHTGEKPFQCEICGKHFMFSWFLASHRRTSHYEILTGTPLVKFDCTICNKHYASASGLRRHNLKNHNDTGVDLSVLCDICGKRLSSREKLKFHHRTHTGYKPYGCQICPKSFSKKEQLIEHVRVHTGEKPYICKYCGRGFTQRTPLRIHERTHTGERPNICPICGKGFISKTALESHIRSCYNTPQMLIQGPLQYPYYPSNASTPMTPSSVHSEAEAKYSLAESEAKYAALMEAEAKLGLPLADPESKYSLTEAFMAPQRASNSAQHTFPLDYFTPIVTINEAPSQMSTSPKIKKIKIKIEGKEGGELSGEIVKRKRGRPKKSSNKNNNTDAEWVTEGKHKKKKEKTQKKQKGKDSKSSKQASNTEIVNENLSDSAVKPEQIDVEIKNEIKEEPSEDLPMILPLSQVDVKPMSPDSGEPKRFKCPLCSKDDNDYTERTPLELKQHYRDRHPGKRLRQSRFSSEVHPCDVCGKEFKTANAVREHMETHSNYFYCEICNGSQKKILEHIIHMRIHSDIGLFQCLMCSFTTPDINFITEHVNNHEDLLKYLCNTCKKGFQILPWFQEHDNYHTGLKPFDCEFCGKCFLYSRYLHAHKLYMHKEDINFPHLHECVICKKQYQHKNSLKLHMNLHTGNFSICDICGKILSSKEKLKFHIRTHTGYKPYNCSYCEKSFTKKPILVEHIRIHTGERPYICDYCTKGFSQRSSLVIHMRGHTGERPYVCQFCTKGFVAKAMLNIHLKTCKGVIFTREDFLTPSPSIADSKPCKNVFAGEDFPTPIALPPALPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -