Basic Information

Insect: Bruchidius siliquastri
Gene Symbol: -
Assembly: GCA_949316355.1
Location: OX438531.1:41460618-41463593[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 9.5 7.1e+02 1.2 0.9 6 22 12 28 6 28 0.84

2 14 0.013 0.99 10.2 0.0 2 20 34 52 33 53 0.93

3 14 0.056 4.2 8.2 0.6 2 20 262 280 261 282 0.92

4 14 8.5e-05 0.0063 17.1 0.9 1 23 290 312 290 312 0.99

5 14 5.3e-05 0.004 17.7 0.8 1 23 329 351 329 351 0.98

6 14 2.4 1.8e+02 3.1 0.3 1 23 381 402 381 402 0.89

7 14 0.00037 0.028 15.0 4.0 1 23 408 430 408 430 0.96

8 14 0.00081 0.061 14.0 0.5 2 20 437 455 436 457 0.93

9 14 6.6e-06 0.00049 20.6 0.7 1 23 464 486 464 486 0.97

10 14 3e-06 0.00023 21.6 3.7 1 23 492 514 492 514 0.98

11 14 0.00034 0.025 15.2 5.1 1 23 520 542 520 542 0.98

12 14 4.1e-06 0.00031 21.2 0.4 1 23 548 570 548 570 0.99

13 14 7.7e-06 0.00058 20.3 0.3 1 23 574 596 574 596 0.98

14 14 0.005 0.37 11.5 0.0 1 23 604 627 604 627 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	9.5	7.1e+02	1.2	0.9	6	22	12	28	6	28	0.84
2	14	0.013	0.99	10.2	0.0	2	20	34	52	33	53	0.93
3	14	0.056	4.2	8.2	0.6	2	20	262	280	261	282	0.92
4	14	8.5e-05	0.0063	17.1	0.9	1	23	290	312	290	312	0.99
5	14	5.3e-05	0.004	17.7	0.8	1	23	329	351	329	351	0.98
6	14	2.4	1.8e+02	3.1	0.3	1	23	381	402	381	402	0.89
7	14	0.00037	0.028	15.0	4.0	1	23	408	430	408	430	0.96
8	14	0.00081	0.061	14.0	0.5	2	20	437	455	436	457	0.93
9	14	6.6e-06	0.00049	20.6	0.7	1	23	464	486	464	486	0.97
10	14	3e-06	0.00023	21.6	3.7	1	23	492	514	492	514	0.98
11	14	0.00034	0.025	15.2	5.1	1	23	520	542	520	542	0.98
12	14	4.1e-06	0.00031	21.2	0.4	1	23	548	570	548	570	0.99
13	14	7.7e-06	0.00058	20.3	0.3	1	23	574	596	574	596	0.98
14	14	0.005	0.37	11.5	0.0	1	23	604	627	604	627	0.97

Sequence Information

Coding Sequence: ATGGGATCATTAGAGCTGATTTGTCCATTATGCTGCCATGAGAAATTTCTTTCCTATAAAGCACTGAAAACTCATATTTTAACTATTTCTCAAAAGTTAATATGCCCTGCGTGCAGAAAGACTTTCGATGATCTCTCAACACTGGCGGACCATTTAGATGGGCTGTGCCAAGAGAGAGAAGAAGAAATTGATGCAATAACAGCTAAGCCAGAgcaaatttcaaaagaaaaatgcaatgatgtgtttaatgatgatgatgaagaaaATGGTGACAACATTAAATATGATGATATGCACGAAATTCTCCAAGAAGAGACAAAACAACAAGAAAAAGAGGACAAAGTCGATAACATAGATGAAACCAAACCTACTAGCTATTTCTGTATAATGTGTAACTTGGGATTTGATGCAATTGACGAACATTTGGAGCAGCATCATGAAGGTGAAGAAGTAATCTTGGAAGAATCAACCTCTGAAGTGTCTGAAACAGTAGACAAACTTAGCCCAATAAAGACTGATCATGAATATGTTTTGGAAATAGTAGATAATGAAGATTCTATTGGCAATCAACTTGATGTTGGAGACCAGTTCGTAAATGAAGAGCACTTTGTTGACAACAGTGGTATAGCATATACTAGGAAATTTGTGAAAGTCCCTGAATTTTGGAAAAACGTACCTCCTTCTCCCATTGTCGAGAAAAATATTCCAGAGAACAGCATGACAAGAAAAATGCATAACCCAGAAGAATCGACCAGTGACAGTGAAATTATTAAGGAAATTCTTAAATGTCCAAAGTGTTCTCTTCAATTTCCTAGGCTTGACTTATACAGTGTTCATACCTGCGGTGGTAAAAAGACAAACTCTGATTTCAAGTGCATGTACTGTTCAGCAgtttttgaatcttttaacaCTTTAGAGGTCCATATGAAAACACATCCAGTAAAAGAAAATGTACAGAAGAAAAGAGTGGTTACGATGGAACCATACACTTGTGAAGTGTGTGGTACGATTTTCCCTTCTTTCAAAAGCTTACGgttacataaaaaaatgcacGAACCTGTAAAAGACAGACCTATAGAAGCACCAGTCAACTACACGATTTCTGGCGTGAAAAAAGAGAAAAGTAATGTGAGAACAATGTTCATTTGTGTCATATGCAATAACACTTACGACAAGGAATATGAGATTGTGCATATGAAGTCTCATAGTAACGACGAAAATTTTGATTGTTCAATATGCAACAAAAAGTTCCATACATTCGAAAATCTAAAAATGCATACAAAGGCGCATAAGAACGAAAAGAAGTTAATGTGTTCGCATTGCAAGAAACCATTCAACTCGGAAGATACTTTGAAAGATCATGTGGGTAAAGAATGCGGGAAGCGCAAATACGCATGTCAGTATTGCGGAAGAACCTTTTCGAGGCCTTACGAGAAGGTCAAACACGAAAGAATCCACACTGGAGAGAAGCCTCACGTTTGTAAGATCTGCGGAAAAGCGTTCAGAGTCAGCTACTGCCTTACTTTGCATCTGAGGACCCACACGGGTTTGAGACCTTACGAATGCGGACATTGTGGAAAGAGGTTCAAATCCCACGGGGTGTACAGTCACCACATTCAAGTGCACTCCGAAGTTAGGGCCTACAAGTGTCCGTACTGCCCCAAGTCCTTCAAAACGGGAGTGCAATTGGCCGGCCATAAGAACACTCATACGAAACCGTTCACTTGCACATACTGCAATAGGCCGTTTGCGTCCTTATATGCTGTTAGAGCACACATGGAGACTCATCAATCGGAGAACAATTTAAAATTCACTTGTTGGTTGTGCGGTGCGAGTTATGGTAGAGCGTTTGCTCTGGGAGATCATATTAAAAGTCAACATACTCAGGACAATATGGATATAGATGAAAACATGTTTGTGGAGCTGGAAGCGCCCGAAAGCCAGTTAGAACAAGACATTGAAAATGAAGACGGGGAAAAGATGGCTGTATGA
Protein Sequence: MGSLELICPLCCHEKFLSYKALKTHILTISQKLICPACRKTFDDLSTLADHLDGLCQEREEEIDAITAKPEQISKEKCNDVFNDDDEENGDNIKYDDMHEILQEETKQQEKEDKVDNIDETKPTSYFCIMCNLGFDAIDEHLEQHHEGEEVILEESTSEVSETVDKLSPIKTDHEYVLEIVDNEDSIGNQLDVGDQFVNEEHFVDNSGIAYTRKFVKVPEFWKNVPPSPIVEKNIPENSMTRKMHNPEESTSDSEIIKEILKCPKCSLQFPRLDLYSVHTCGGKKTNSDFKCMYCSAVFESFNTLEVHMKTHPVKENVQKKRVVTMEPYTCEVCGTIFPSFKSLRLHKKMHEPVKDRPIEAPVNYTISGVKKEKSNVRTMFICVICNNTYDKEYEIVHMKSHSNDENFDCSICNKKFHTFENLKMHTKAHKNEKKLMCSHCKKPFNSEDTLKDHVGKECGKRKYACQYCGRTFSRPYEKVKHERIHTGEKPHVCKICGKAFRVSYCLTLHLRTHTGLRPYECGHCGKRFKSHGVYSHHIQVHSEVRAYKCPYCPKSFKTGVQLAGHKNTHTKPFTCTYCNRPFASLYAVRAHMETHQSENNLKFTCWLCGASYGRAFALGDHIKSQHTQDNMDIDENMFVELEAPESQLEQDIENEDGEKMAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -