Bsil003873.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bruchidius siliquastri
Gene Symbol
Snai1
Assembly
GCA_949316355.1
Location
OX438530.1:31834709-31844845[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00036 0.027 15.1 0.1 1 23 339 361 339 361 0.96
2 12 1.6e-05 0.0012 19.4 1.5 1 23 369 391 369 391 0.99
3 12 2.2e-05 0.0017 18.9 0.5 2 23 399 420 398 420 0.97
4 12 3.7e-06 0.00028 21.3 1.3 1 23 426 448 426 448 0.98
5 12 4.2e-05 0.0031 18.0 2.9 1 23 455 477 455 477 0.99
6 12 0.00025 0.019 15.6 4.0 1 23 483 505 483 505 0.95
7 12 8.6e-06 0.00064 20.2 0.1 1 23 511 533 511 533 0.98
8 12 8e-07 5.9e-05 23.4 1.2 1 23 539 562 539 562 0.96
9 12 8.2e-05 0.0061 17.1 0.6 1 23 568 591 568 591 0.95
10 12 2.5e-05 0.0019 18.7 1.9 1 23 597 619 597 619 0.98
11 12 9.7e-05 0.0072 16.9 0.4 1 23 625 647 625 647 0.94
12 12 0.071 5.3 7.9 0.2 1 21 653 673 653 677 0.92

Sequence Information

Coding Sequence
ATGTCTTCAAAGTCTGTTATTAGTGCCTGTTTGGTGTGCAATTCCTGCTGTACCAGCAAAACTGGCATACAAGTCTTTGATATCGAGCACAATGAATTTACCGAAGACTTAGCATCTCTACTCTCTAAGCTTTTAAATAAAGACATAAAACAGGATCCATTATCTACCCAACTGATATGCAAAAAGTGCTATAAGTTGGCTCACGAACTGGATGAACTACAGAATAAAGTACAAAAGATCAAACATGAGATGCTTGACCAACACAAAGTTAGTTCTGGTATTGGAAAGACAGAAGTTGAAGAGGAGACAGAGGACAAGGCTACCATTATAGAAGGTAGTGAAAACACTGGTGAGGAAGAAACTTTAACtgcaaataatgataatgatttgCCAAAGAAGATTCTGTTTATCCCATCCTCTGACGATGATTCAACACAGGTTCCTCCAGAAAAACATATTGGAGACTTGCCAATTGGCATGCTTGAAGTTAAAAATGGTGAGGAAATTGCTCCTATTGAGTCAGAGGAACTAGAGAAAGAGAATGAAGAAGATATGGACGTAGATACAAGTTTTCCTGGTTTCACTACAGATGATCATATTTTAGAACATTCCTCAGATGGAGAATATGAAACTACTGCTGTCCTAACAACTGATGATCTAACCAAGGCGACCATCATTATAACAGATAATAATGGTGCAGATAGTGGGATAAAAGTAAAAATGGAACCAAGTGGGGAGGATCAACcgcaacaacaacaacatatTTTATCATCTATGTCAACCAGCGCGAAACCAAACATACTAAAAAGGAAGGTTGTCCAAAAACAACAGCAGAACACGGTACTTCTGACGACTTCCGCTTCGGAACAGGCCAAGTTTGATGACTACTCTACCAACGTGGTAAGCAGGAAGGGGGACTACTACACCTGCCTGATGTGCGAGACCGATAAAACTGTCGTTGGAGATGCCAAATCCATCTCGTCTCACACAAAGGAGGCGCACGATGTCAGGATATATGTTTGCGATGTTTGTGGTGCGGTATTCAGAAAGCGAACGCAAATGTCCGCGCATCTGGACGAGCACGTGGCGGCCGACGAGGGCGATTTTCAATGCGAGGTGTGTAACCGTATCTTCAGCAACTTGCGCTTGTTCCGGATACATCGGCGGATGCACTTCCCACAGAACAAGGCATGGGAGTGCACCACGTGCGGCAAGAAATACAGCAGCAAAAACTTGCTGGACGAGCACATCAATACTCACTTGGGTTTGAGGCCGTACGTTTGCACAAACTGTGGCAAAGATTTCGCCAGCAAATACACCTTCAAAGCGCACGAGAAGACTCATGAAATTAGACCACGGCCTTACAAGTGCAACCAATGCTCAAAGTCGTTTTTAAGTCAACAGAACCTAACTCAACACGAAAGGACACATTTGGGTTTGAGGGAGTTCTGCTGTCATCTGTGCGACAAGACGTTCGGCTCAGCGCACAACCTGGAGGTGCATTCTATCGTGCACACGGGCTACAAACCGTTCGTGTGCAGCGTGTGCGACAAGGCGTTCGCACGTAAGGCTGAGATCAGAGACCACGAGCGCACACACACCGGCGAACGTCCTTATCAGTGCGAGTTCTGCGGCGCTACATTCAGCCAGAGGTCGAACCTGCAGAGCCACAAAAGGGCTACGCACTACGACGACAAGAGATACAGATGTATGGATTGTGGTAAAGGATTCAAACGAAGACGCCTATTAGATTATCACGTAAAGGCAGTACATACAGGAGAACGTCCGTTCAGATGCGAAGTGTGCGAAGCGACGTTCGTCTACCCCGAACACTTCAAGAAACACCGTCGTATTCACACCGGCGAGAAACCGTACCTCTGCGAAGTGTGCGGCAAGGCGTTCAACAGCCGCGACAACAGGAACGCGCATAGATTTGTGCACAGCGACAAGAAACTGTACGAGTGCCTCGCTTGCGGTGCTGGGTTCATGAGGAAGCCGTTACTGTACCAGCACATGCACGCACAGGGACATCTCAACGATACCATCGTTGTCAATCAGCCAAGGCTGACGACCGACGACGACGAGCTAGTGACTGTGAACGCAGCCGGTGAGATGGAGATCCTAGAGGCGAGCGTCAGCACCGGCGTCGACGCGTCCACTTCCACAGTCGCGACGAACCATTTGGAGTCGAAGCTGTACATCCAAGACGCGACAGGCGAAGAGGGAGAAGTCGGCGGACACATCATCATTAACGGGGAACAGTTTAACTTTGCCGAGAGCGCCACCGATGACGAGAACGACGCAGAGATCATCGGTAGGATAGAGCAGGTGGTTACCTCAGACCAGGACGAATATGATGAATTAATTGCAAGCGATGCCTTAACATGTGAAGAAACACAGATCATAGATACGCCAGATGGGCCTGTTCAACTTGTGAAAGTTCGGATACCGAACGAAAACGGGGAAGAAGAAGAGGCGTGGGTTAAAATTGTTCCAGAATAA
Protein Sequence
MSSKSVISACLVCNSCCTSKTGIQVFDIEHNEFTEDLASLLSKLLNKDIKQDPLSTQLICKKCYKLAHELDELQNKVQKIKHEMLDQHKVSSGIGKTEVEEETEDKATIIEGSENTGEEETLTANNDNDLPKKILFIPSSDDDSTQVPPEKHIGDLPIGMLEVKNGEEIAPIESEELEKENEEDMDVDTSFPGFTTDDHILEHSSDGEYETTAVLTTDDLTKATIIITDNNGADSGIKVKMEPSGEDQPQQQQHILSSMSTSAKPNILKRKVVQKQQQNTVLLTTSASEQAKFDDYSTNVVSRKGDYYTCLMCETDKTVVGDAKSISSHTKEAHDVRIYVCDVCGAVFRKRTQMSAHLDEHVAADEGDFQCEVCNRIFSNLRLFRIHRRMHFPQNKAWECTTCGKKYSSKNLLDEHINTHLGLRPYVCTNCGKDFASKYTFKAHEKTHEIRPRPYKCNQCSKSFLSQQNLTQHERTHLGLREFCCHLCDKTFGSAHNLEVHSIVHTGYKPFVCSVCDKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYRCMDCGKGFKRRRLLDYHVKAVHTGERPFRCEVCEATFVYPEHFKKHRRIHTGEKPYLCEVCGKAFNSRDNRNAHRFVHSDKKLYECLACGAGFMRKPLLYQHMHAQGHLNDTIVVNQPRLTTDDDELVTVNAAGEMEILEASVSTGVDASTSTVATNHLESKLYIQDATGEEGEVGGHIIINGEQFNFAESATDDENDAEIIGRIEQVVTSDQDEYDELIASDALTCEETQIIDTPDGPVQLVKVRIPNENGEEEEAWVKIVPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-