Basic Information

Insect: Bruchidius siliquastri
Gene Symbol: Bcl11a
Assembly: GCA_949316355.1
Location: OX438536.1:4690643-4693213[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.008 0.6 10.8 1.7 2 20 9 27 8 31 0.88

2 20 0.00012 0.009 16.6 1.7 1 23 36 59 36 59 0.95

3 20 0.53 40 5.1 3.0 3 23 67 88 65 88 0.90

4 20 0.00056 0.042 14.5 3.4 1 23 93 115 93 115 0.97

5 20 0.0018 0.13 12.9 0.8 1 23 122 145 122 145 0.97

6 20 0.047 3.5 8.4 0.2 2 12 152 162 151 170 0.77

7 20 1.1e-05 0.00081 19.9 2.1 1 23 176 198 176 198 0.99

8 20 3e-05 0.0022 18.5 3.3 1 23 204 226 204 226 0.97

9 20 0.016 1.2 9.9 1.0 2 23 256 277 255 277 0.95

10 20 6.9e-07 5.1e-05 23.6 1.6 1 23 283 305 283 305 0.98

11 20 0.028 2.1 9.1 0.2 1 19 311 329 311 331 0.95

12 20 0.00095 0.071 13.8 0.4 2 23 355 377 354 377 0.95

13 20 0.00081 0.06 14.0 2.9 2 23 384 406 384 407 0.95

14 20 0.18 13 6.6 3.1 1 23 412 434 412 435 0.94

15 20 0.0038 0.29 11.9 2.1 1 23 440 462 440 462 0.98

16 20 0.0014 0.1 13.3 2.2 1 23 471 493 471 493 0.96

17 20 0.73 54 4.7 0.4 3 10 501 508 500 508 0.97

18 20 4e-08 3e-06 27.5 2.6 1 23 524 546 524 546 0.99

19 20 5.3e-08 4e-06 27.1 0.5 1 23 552 574 552 574 0.98

20 20 0.36 27 5.7 1.4 1 21 580 600 580 601 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.008	0.6	10.8	1.7	2	20	9	27	8	31	0.88
2	20	0.00012	0.009	16.6	1.7	1	23	36	59	36	59	0.95
3	20	0.53	40	5.1	3.0	3	23	67	88	65	88	0.90
4	20	0.00056	0.042	14.5	3.4	1	23	93	115	93	115	0.97
5	20	0.0018	0.13	12.9	0.8	1	23	122	145	122	145	0.97
6	20	0.047	3.5	8.4	0.2	2	12	152	162	151	170	0.77
7	20	1.1e-05	0.00081	19.9	2.1	1	23	176	198	176	198	0.99
8	20	3e-05	0.0022	18.5	3.3	1	23	204	226	204	226	0.97
9	20	0.016	1.2	9.9	1.0	2	23	256	277	255	277	0.95
10	20	6.9e-07	5.1e-05	23.6	1.6	1	23	283	305	283	305	0.98
11	20	0.028	2.1	9.1	0.2	1	19	311	329	311	331	0.95
12	20	0.00095	0.071	13.8	0.4	2	23	355	377	354	377	0.95
13	20	0.00081	0.06	14.0	2.9	2	23	384	406	384	407	0.95
14	20	0.18	13	6.6	3.1	1	23	412	434	412	435	0.94
15	20	0.0038	0.29	11.9	2.1	1	23	440	462	440	462	0.98
16	20	0.0014	0.1	13.3	2.2	1	23	471	493	471	493	0.96
17	20	0.73	54	4.7	0.4	3	10	501	508	500	508	0.97
18	20	4e-08	3e-06	27.5	2.6	1	23	524	546	524	546	0.99
19	20	5.3e-08	4e-06	27.1	0.5	1	23	552	574	552	574	0.98
20	20	0.36	27	5.7	1.4	1	21	580	600	580	601	0.89

Sequence Information

Coding Sequence: ATGAAGTCATCTATAGATATGTTGCCTTGCAACGTATGCACTGAGAAATTCAAAAACGAACATTCTCTTCAGCTACACAACTTCTTAAGACATGTAGCTAACGTGTTCAAATGTAATCTCTGTGATAAAGCTTTCCGCTTCAACAAAACCTTATCTCTTCATAAAGAAAGTGTCCATGGTAATAGCAATGTTCTTTCCTGCCAACCGTGCAACAggaattttacatttttgaagcATCTGGACACCCATCATATCGTCGACCACGATGGTTTTCGATACATCTGCAAAGTTTGCAACAAAGAGCTGAAAAGTCGAGaccatttcaaaattcatcagTCATACCACGACGATTTTCGTAAGATATTCCCTTGTGACGAATGTGGCGTTGTTTTGGCTTCCAAACATTCGTTCAGAGGTCACAAACGTAGGCAGCATTCAAAGTTTGGCAGAAAAGTTTGTGATGTTTGCGGAAAAGCTTTCACGAACATGGCGCTTCATAAACGAATCCATACAGGAGAAAAACCGTACAAATGTGATGTTTGCAGCGCTAGGTTTGCACATTCAAGCAACCTCAAAGATCACAAACTGACACACACAAAGGAAAAACCCTTCGTTTGCGAAAAATGTGGGAAGTCTTTTACATGCCGCAATAATCTAAAATCTCACATAAAAGGTCATTTTGAGAGGAGGAAAGATATCAAGAACAAAATCGTTCCCACAAGCAAAAATAAGACGATCAGCGAAACTGagaagaacaaaaaagtgaAATGTGAACAATGCCAAAAAATGTTCAGCAAATTTTTTATAGCCGTCCATATACGCACACAACACCAAGGCGAACGACGCTATTCTTGTAAAATTTGCTACAAGACGTTCACCCAAtctgcaaatttgataatacaCACAAGATATCATACTGGCGAAAGGCCTTATAATTGTGCAGTGTGCTATAAAGGTTACGTTACCAAAGCGAAGCTGAGATTGCATAAGGTCTTACTACTTAGTAACGTGTGTGACATCAAATATGTCATACCTGCGCCAAACACCATGGAAGACAAATGGCCTTGTGGCATCTGTGATGAAGTCTATCAAAGCCTTGCAAAGCTCAAAAAACATCACAGAGAAAACCACGAACCTGAGAATGAAAACCGATGCCATTTGTGCGAAGAGACGTTCAGAACACCTCGCCAACTTGCTATCCACAAAGAAAAAGTGCATCATACTGATTATAGATACTACTGCGACCCTTGCAAGAGATACTTCGATTGCCCGAGCAATCTGGATAAGCACATCATGATCCACCATAAAGGATTTCGTTATGAGTGCAGATTTTGCAAAAGGAATTTCAAAGATGTCCGACTCTATAGGCAGCACGTTGCAACTCATTCTAAGGATTATGTCGCTCCAGGATATCGTTGCGACCAGTGCGATAAAGTTATGCACACCAAAAGTGGACTAAGGAAGCATAAACTCGCGCATACCGGAGCCAACAAAACCTTATGCAATGTTTGTGGAAAGTCATTCCTATGCATAGCGGACCACAAGAAGATTCACACTGGCGAGAAACCGTTCAAATGCGAATATTGTGAAAAGAGGTTCAGGACTTCCAGTAATCTTACTATCCATAGGCGTGTTCATACCAAGGAAAGACCATACAGTTGCGATATTTGTGGTAAAACGTTCACCCAGCGATGGACGCTTGTCATTCATATGAGAAATCACAAAGGGGAAAAACCGTACGAATGTGAAAAATGTTCTAGGGCGTTTTTGACCCGAACTGTCATGAATAAACATGTATGTACGAAATCAGGGAAGCGGACGATGGAGAGGGGAAGTCCAGAAGAAATGTGA
Protein Sequence: MKSSIDMLPCNVCTEKFKNEHSLQLHNFLRHVANVFKCNLCDKAFRFNKTLSLHKESVHGNSNVLSCQPCNRNFTFLKHLDTHHIVDHDGFRYICKVCNKELKSRDHFKIHQSYHDDFRKIFPCDECGVVLASKHSFRGHKRRQHSKFGRKVCDVCGKAFTNMALHKRIHTGEKPYKCDVCSARFAHSSNLKDHKLTHTKEKPFVCEKCGKSFTCRNNLKSHIKGHFERRKDIKNKIVPTSKNKTISETEKNKKVKCEQCQKMFSKFFIAVHIRTQHQGERRYSCKICYKTFTQSANLIIHTRYHTGERPYNCAVCYKGYVTKAKLRLHKVLLLSNVCDIKYVIPAPNTMEDKWPCGICDEVYQSLAKLKKHHRENHEPENENRCHLCEETFRTPRQLAIHKEKVHHTDYRYYCDPCKRYFDCPSNLDKHIMIHHKGFRYECRFCKRNFKDVRLYRQHVATHSKDYVAPGYRCDQCDKVMHTKSGLRKHKLAHTGANKTLCNVCGKSFLCIADHKKIHTGEKPFKCEYCEKRFRTSSNLTIHRRVHTKERPYSCDICGKTFTQRWTLVIHMRNHKGEKPYECEKCSRAFLTRTVMNKHVCTKSGKRTMERGSPEEM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -