Basic Information

Insect: Bruchidius siliquastri
Gene Symbol: -
Assembly: GCA_949316355.1
Location: OX438533.1:7858739-7866839[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.5e-05 0.0018 18.8 0.5 1 23 205 227 205 227 0.98

2 12 5.6e-05 0.0042 17.6 0.2 1 23 233 255 233 255 0.98

3 12 2.2e-05 0.0016 18.9 3.5 1 23 261 283 261 283 0.98

4 12 0.00061 0.045 14.4 2.6 3 23 297 317 295 317 0.95

5 12 7.5e-05 0.0056 17.2 0.2 2 23 324 345 323 345 0.97

6 12 1.7e-07 1.3e-05 25.6 1.8 1 23 351 373 351 373 0.99

7 12 6.2e-08 4.7e-06 26.9 1.0 1 23 379 401 379 401 0.99

8 12 1e-06 7.8e-05 23.1 0.4 1 23 407 429 407 429 0.98

9 12 8.5e-07 6.3e-05 23.4 0.8 1 23 435 457 435 457 0.98

10 12 5.1e-06 0.00038 20.9 0.3 1 23 463 485 463 485 0.98

11 12 8.3e-05 0.0062 17.1 5.8 1 21 491 511 491 513 0.94

12 12 7e-06 0.00053 20.5 4.0 1 23 519 541 519 541 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.5e-05	0.0018	18.8	0.5	1	23	205	227	205	227	0.98
2	12	5.6e-05	0.0042	17.6	0.2	1	23	233	255	233	255	0.98
3	12	2.2e-05	0.0016	18.9	3.5	1	23	261	283	261	283	0.98
4	12	0.00061	0.045	14.4	2.6	3	23	297	317	295	317	0.95
5	12	7.5e-05	0.0056	17.2	0.2	2	23	324	345	323	345	0.97
6	12	1.7e-07	1.3e-05	25.6	1.8	1	23	351	373	351	373	0.99
7	12	6.2e-08	4.7e-06	26.9	1.0	1	23	379	401	379	401	0.99
8	12	1e-06	7.8e-05	23.1	0.4	1	23	407	429	407	429	0.98
9	12	8.5e-07	6.3e-05	23.4	0.8	1	23	435	457	435	457	0.98
10	12	5.1e-06	0.00038	20.9	0.3	1	23	463	485	463	485	0.98
11	12	8.3e-05	0.0062	17.1	5.8	1	21	491	511	491	513	0.94
12	12	7e-06	0.00053	20.5	4.0	1	23	519	541	519	541	0.98

Sequence Information

Coding Sequence: ATGGATATGAGCATTTATCTTTCTACGCCCTTGCAGATTGATAAAATCTGCAGGGCTTGCCTTTCAGAAAAAGGCGATATGAGGCCTCTGTATGGGGCATGTCTGGACGAAATGATGAAGTCGTTTGCCTCGATAGAGGTGCAACAGGGAGATGGTTTTCCCAACCTTATGTGTGTCCAATGTGTCCTACAATGTAGCAGAGCATATACTTTCAAGCAGCTATGTGAAAAATCCGACAACATTTTAAGAGAGTACCTGTCACCTGAGTTTCAGCAACGACTTGCTCAGTCAGTGTCTGAACAACAGggtgaaaaatgtaatgaaatgcAAGTTATTGAAGAAGAACAACAGCAGGAAGAGGTGGAAGAAGAAACACAAGTGATCACAGATGCTAGAGAAATACATTTGATTGATGAAATGGGCAATATTGTTGTACATCATGATGTCACAGAATTTGTCACATATGCAGAAGATGTAAAAGACGGTGAGATCTACACAACAATTGAATGTGTTCCCAATGCACATGATATACATATAACTGAAGAATCTGAGCATCAAGAGGAAGTTATCCAGACTGAGCAAATTGATGTGCCAAGTGTTACAAAGGCAAAATATTCATGCCCAAAGTGTGAAATGTCATTCAATCTTAAAGTTGACTTgaagATTCACCTGATGAAACACCCCAAAGACCTAGACTACGTGTGCGAAATATGCGACAAGGGTTTTACGGAAGCCCGGATCTTGAAACGCCACCTGAAGATTCACCTGGAACAGAAACCACATAAATGCGACCAATGTGACATGTCGTTTGCTGAAAGTTCAAATCTGAGCAAACATAAGAAGAAGCATACAGGAGAGCTTAGAAACATTATAGGCAAGCCACATCTCTGTTCTTCGTGTGGGAGATCTTTCAAATGGGCCTCCAGTTTGTCGAAGCATATGAAGTATCATACTGGGCATAAGCTATTATCTTGCGAATTCTGTGGGAAGCAGTATGttgagGCAAGAAGCTTGAGGATACATATTAGGAGTCACACTGGCGAACGACCTTATGTCTGTAGCATATGTCAAAAAGGTTTCACACAAGAGTGCAACTTGGAAAAACATATGAGAGTACATACAGGAGAGAAACCATTCCAGTGTACGGTTTGTGGGAAACGtTTCACCCAGTCGGGATACGTGAACATCCACATGCGCACCCACACCGGCGCTCGACCGTACATCTGTCCGACTTGCGGCAAGTCCTTCGCAGGTTCCAGTACATTACATATCCACCAGCAGATCCACACTGGCGAGAAACCTTACGTGTGCAATGTGTGCGGCAAGGCGTTTAGTAGACACGAAACTCTCATCATCCATTCCAGATCTCATACGGGAGTTAAACCATACATATGTACTGTCTGCAATAGAGGATTTACATCATCAGGATTGTTAAGTGGGCATATGAAGACTCATACTGGAGTGAAGCCTCATGTTTGTCATATTTGTCAAAAGAAGTTTGCCAGTTCAAGCAGTTTGAAGGTACACTTGCGATGTCATTCTGGGGAGAAGCCGTACGTTTGCAAGTTGTGCAATAAGTCTTTTGCACATAGCAGTTCACTGCATCAACATCTAGGAACACATCAACATTTAGGGGCGCAGACAATAGAAGTCAAGAACCTCTGTAAAGTGGAGACCGTACAAGTTGCTGAATTGATAACCGCTGACAACCAAACCATCAAAGTAGAAGCAATTacaactatataa
Protein Sequence: MDMSIYLSTPLQIDKICRACLSEKGDMRPLYGACLDEMMKSFASIEVQQGDGFPNLMCVQCVLQCSRAYTFKQLCEKSDNILREYLSPEFQQRLAQSVSEQQGEKCNEMQVIEEEQQQEEVEEETQVITDAREIHLIDEMGNIVVHHDVTEFVTYAEDVKDGEIYTTIECVPNAHDIHITEESEHQEEVIQTEQIDVPSVTKAKYSCPKCEMSFNLKVDLKIHLMKHPKDLDYVCEICDKGFTEARILKRHLKIHLEQKPHKCDQCDMSFAESSNLSKHKKKHTGELRNIIGKPHLCSSCGRSFKWASSLSKHMKYHTGHKLLSCEFCGKQYVEARSLRIHIRSHTGERPYVCSICQKGFTQECNLEKHMRVHTGEKPFQCTVCGKRFTQSGYVNIHMRTHTGARPYICPTCGKSFAGSSTLHIHQQIHTGEKPYVCNVCGKAFSRHETLIIHSRSHTGVKPYICTVCNRGFTSSGLLSGHMKTHTGVKPHVCHICQKKFASSSSLKVHLRCHSGEKPYVCKLCNKSFAHSSSLHQHLGTHQHLGAQTIEVKNLCKVETVQVAELITADNQTIKVEAITTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00260817;
90% Identity: -
80% Identity: -